Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003688

Physical Location & Seq

Genomic Coordinates Reverse (-)

53741036 .. 53746365

Gene Structure 5330 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G029710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2043 bp

ATGGCTGGTTCAGTCAGTGGGGAGCAACAGAGCGCCTACCCTGTTAACAACCGCCAAGGTGATAAAGATGATTTGTACACCCAACTATGGCATACATGTGCCGGGTCTAATATCTATGTCCCACGCCCTGGAGACAAAGTTTTCTACTTCGCTCAAGGCCACATTGAACAGGTTGAGGCATATGCAGACCCAGACAGTAATGCGCCCATGCCAAAATACAATTTGCCTCCCAAGATTCTCTGCCATGTTGTTAATGTGCAGCTAAAGGCCGAAGTTCACACAGATGAAGTCTTTGCTCAGATAACCTTGCTTCCTGTGACTGAGCAAGACCAGCTAAGTTTTGAGGATGAAAATGCTCCATCTTTGCCTTATAGAACCAGAACATGCTTTAGCAAGATACTCACTCCATCTGACACAAGCACCCATGGTGGATTCTCTGTTCCAAAGCGACATGCCGAGGAGTGCTTTCCACCTCTGATGTTCTTGCAGGAGATGTTTCATCAACCACCAGTACAGGAACTCACTACAAAGGACTTGCATGGAGTTGAATGGCACTTTCGTCATATATACCGCGGTCAGCCAAAGAGGCACTTGCTTACTAGTGGTTGGAGTACATTTGTGACTGCCAAGAAACTTGTTCCTGGGGATGCATGTATCTTTGTCAGAGGAGAAAATGGAGAGCTCCGTGTTGGCATATGCCGTGCGACCAAAACACAAGACAATGCAACAGCTTCCCTCATTTCTGGCAATAGCATGCAGCATGGCATCCTTGCGAGTGCCTTCCACGCCATTTGTACTGGAACCATGTTTACCGTGTATTATCGCCCTTGGACCAGTCCTGTGCCATTCATAATTCCATATGATCAATACATGAAATCACCCAAAGATGAATATTCTGTTGGGATGAGATTCAGAATGTGGTTTGAAGCTGAAGAATGTGCAGAGAAGAGATGTGAAGGTACCATAATAGATATTAAAGATAAGGATCCTGTTAGGTGGCCCAGTTCTGAATGGGGGTGTCTGAAGGTGCAATGGGATACCACATCAGCTACGCTCTTGCATTCTGAAAGGCTTTCTCCTTGGAACATTGAGCCTGCAGAATCCACCAAGACGAAGAGGACTTCTTTCCCTGTCCCACCTCATAAGAGACCACGTATACCTGATCTATCATTACCTGTGTTTTCTGGGTTGGCCAGGAATGGCCCATTTCCATTAATAATGCCTCAAAGACGAGAAAAGGTCTTTCAAGGTCAAGAAATAAGCGAAACACATGCTAATGAACTAGGTGCACCAATGTATGATCCACTACACCAAAGTCCTCGCAGTTCAATAGCATTTTCCAGTGAAAATATGCTGACTCCAGGCCACATTAACCAATGGCCATCACAGTTGACTACTTTTGGGGTCGTTGACAGTGTTCCCTTTAGCAGAAGCATGTCGGTTCCAAATATCAACTCCTCTGGATCCCAGGAATTAAGCGCCTCTAAACAGAGGAGTGAGACTCAAGGGCCATTTGTTCCATCAAATACCCTCATGCTTTTTGGAGTCAATTTAGATAACAGTCACTCGGAGCTCCCTTCACCACAAGTTGCCAATTCTAGTGGACATTTAAGTCCTTGTTCTATTCCTCCAATTTCTCAGTCAAGTGTTTCTGAAACTGTCCAACTTTCAGAGACATCTAAGAGTATTTCTTGTGTTCTTTCTGAGACACAATGCAAGAAATGTTGTTCTGTCAGCAACAGGAGTTGCATAAAGGTGCTCAAGTATGGAGCTGCCCTTGGAAGATCAGTGGACCTCACACGCTTTGATGGGTATGGTGAGCTTATTTCTGAGCTTGACCAGATGTTTGATTTTGAAGGAAGGTTGATCGATGGAAGCAGTGGATGGCAGGTAACCTACATGGACGATGAAGGAGACATGATGCTGATAGGAGATTATCTGTGGCATGAATTCCTGTCAATGGTGCGAAAAATGTTCATCAGTCCAAAGGATCAAGAAATCGACAGTCTGAATCCAGGCTCTCCAAATGCAACATCCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

680

Amino Acids

76.01

Weight (kDa)

5.8

Isoelectric Point (pI)

61.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	130 - 235	1.5e-24	B3 DNA binding domain
BRWD_AD	PF25313	265 - 368	5.2e-10	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	283 - 366	5.3e-30	Auxin response factor ancillary domain
AUX_IAA	PF02309	574 - 660	7.9e-09	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24730 FvH4_2g24730 FvH4_2g24730 FvH4_5g06540
malus_domestica	MD00G1056300.v1.1 MD05G1338500.v1.1 MD11G1297900.v1.1
prunus_persica	Prupe.8G252300_v2.0.a1
pyrus_communis	pycom02g21520 pycom03g21940 pycom03g21950 pycom05g12140 pycom11g26170 pycom16g06400 pycom16g24090
rosa_chinensis	RchiOBHm_Chr6g0292551
rosa_laevigata	RLG00000012010
rosa_multiflora	Rmu_co8118566.1_g000001 Rmu_sc0000515.1_g000001 Rmu_sc0003486.1_g000005 Rmu_sc0004825.1_g000018
rosa_roxburghii	Rroxscaffold_4G00318020 Rroxscaffold_7G00174940
rosa_rugosa	Rorug06G0227900
rosa_samantha	Rh5AG357200 Rh5DG382900 Rh6AG341000 Rh6AG341100 Rh6BG089400 Rh6BG348500 Rh6CG355300 Rh6CG355400 Rh6DG341100 Rh6DG341200
rosa_wichuraiana	Rw6G029710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1611
Acc36I	ACCTGC	1 cut(s)	1879
Acc65I	GGTACC	1 cut(s)	959
AccB1I	GGYRCC	1 cut(s)	959
AccB7I	CCANNNNNTGG	1 cut(s)	128
AccI	GTMKAC	1 cut(s)	1156
AccII	CGCG	1 cut(s)	573
AciI	CCGC	3 cut(s)	52, 571, 573
AclWI	GGATC	6 cut(s)	980, 993, 1295, 1458, 1471, 1998
AcoI	YGGCCR	2 cut(s)	1191, 1379
AcsI	RAATTY	1 cut(s)	1949
AcuI	CTGAAG	2 cut(s)	951, 1043
AfaI	GTAC	5 cut(s)	77, 513, 613, 796, 961
AfiI	CCNNNNNNNGG	3 cut(s)	87, 128, 1960
AflIII	ACRYGT	1 cut(s)	95
AgsI	TTSAA	6 cut(s)	167, 548, 926, 1247, 1329, 1856
AhlI	ACTAGT	1 cut(s)	599
AjnI	CCWGG	6 cut(s)	127, 640, 1193, 1360, 1467, 2014
AjuI	GAANNNNNNNTTGG	2 cut(s)	882, 914
AloI	GAACNNNNNNTCC	2 cut(s)	423, 455
Alw21I	GWGCWC	4 cut(s)	684, 1291, 1575, 1761
Alw26I	GTCTC	6 cut(s)	126, 1141, 1493, 1667, 1700, 1908
Alw44I	GTGCAC	1 cut(s)	1287
AlwI	GGATC	6 cut(s)	980, 993, 1295, 1458, 1471, 1998
AoxI	GGCC	8 cut(s)	157, 267, 998, 1191, 1201, 1363, 1379, 1508
ApaLI	GTGCAC	1 cut(s)	1287
ApeKI	GCWGC	3 cut(s)	259, 757, 1772
ApoI	RAATTY	1 cut(s)	1949
ArsI	GACNNNNNNTTYG	2 cut(s)	1829, 1861
AseI	ATTAAT	1 cut(s)	1214
Asp718I	GGTACC	1 cut(s)	959
AspLEI	GCGC	3 cut(s)	35, 205, 1481
AspS9I	GGNCC	5 cut(s)	831, 999, 1202, 1508, 1792
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	4 cut(s)	71, 870, 1572, 1829
AvaII	GGWCC	2 cut(s)	831, 1792
BaeGI	GKGCMC	1 cut(s)	1291
BalI	TGGCCA	2 cut(s)	1193, 1381
BamHI	GGATCC	2 cut(s)	985, 1463
BanI	GGYRCC	1 cut(s)	959
BanII	GRGCYC	2 cut(s)	684, 1575
Bbv12I	GWGCWC	4 cut(s)	684, 1291, 1575, 1761
BbvI	GCAGC	3 cut(s)	271, 769, 1759
BccI	CCATC	7 cut(s)	367, 415, 1390, 1528, 1802, 1865, 1878
BceAI	ACGGC	1 cut(s)	684
BcgI	CGANNNNNNTGC	2 cut(s)	1253, 1287
BciT130I	CCWGG	6 cut(s)	129, 642, 1195, 1362, 1469, 2016
BciVI	GTATCC	1 cut(s)	1030
BclI	TGATCA	1 cut(s)	862
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	6 cut(s)	126, 1141, 1493, 1667, 1700, 1908
BcuI	ACTAGT	1 cut(s)	599
BfaI	CTAG	3 cut(s)	600, 1283, 1599
BfmI	CTRYAG	1 cut(s)	1095
BfoI	RGCGCY	2 cut(s)	36, 1482
BfuAI	ACCTGC	1 cut(s)	1879
BfuI	GTATCC	1 cut(s)	1030
BglI	GCCNNNNNGGC	1 cut(s)	586
BisI	GCNGC	3 cut(s)	260, 758, 1773
BlsI	GCNGC	3 cut(s)	261, 759, 1774
Bme1390I	CCNGG	7 cut(s)	103, 129, 642, 1195, 1362, 1469, 2016
Bme18I	GGWCC	2 cut(s)	831, 1792
BmgT120I	GGNCC	5 cut(s)	831, 999, 1202, 1508, 1792
BmiI	GGNNCC	5 cut(s)	802, 961, 987, 1443, 1465
BmrFI	CCNGG	7 cut(s)	103, 129, 642, 1195, 1362, 1469, 2016
BmrI	ACTGGG	1 cut(s)	996
BmsI	GCATC	3 cut(s)	637, 774, 1911
BmuI	ACTGGG	1 cut(s)	996
BplI	GAGNNNNNCTC	2 cut(s)	1486, 1518
BpmI	CTGGAG	2 cut(s)	150, 1344
BpuEI	CTTGAG	3 cut(s)	138, 1488, 1745
BpuMI	CCSGG	1 cut(s)	103
Bsa29I	ATCGAT	1 cut(s)	1869
BsaAI	YACGTR	1 cut(s)	1154
BsaBI	GATNNNNATC	1 cut(s)	984
BsaI	GGTCTC	1 cut(s)	1141
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 128, 1960
Bse1I	ACTGG	5 cut(s)	509, 802, 834, 1002, 1341
Bse3DI	GCAATG	1 cut(s)	1037
Bse8I	GATNNNNATC	1 cut(s)	984
BseBI	CCWGG	6 cut(s)	129, 642, 1195, 1362, 1469, 2016
BseCI	ATCGAT	1 cut(s)	1869
BseGI	GGATG	6 cut(s)	352, 652, 765, 909, 1889, 2033
BseJI	GATNNNNATC	1 cut(s)	984
BseLI	CCNNNNNNNGG	3 cut(s)	87, 128, 1960
BseMI	GCAATG	1 cut(s)	1037
BseMII	CTCAG	5 cut(s)	311, 312, 1652, 1695, 1821
BseNI	ACTGG	5 cut(s)	509, 802, 834, 1002, 1341
BseRI	GAGGAG	4 cut(s)	473, 681, 1447, 1507
BseSI	GKGCMC	1 cut(s)	1291
BseXI	GCAGC	3 cut(s)	271, 769, 1759
BsgI	GTGCAG	2 cut(s)	278, 960
Bsh1236I	CGCG	1 cut(s)	573
BshFI	GGCC	8 cut(s)	159, 269, 1000, 1193, 1203, 1365, 1381, 1510
BshNI	GGYRCC	1 cut(s)	959
BshVI	ATCGAT	1 cut(s)	1869
BsiHKAI	GWGCWC	4 cut(s)	684, 1291, 1575, 1761
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	2 cut(s)	104, 1118
BslI	CCNNNNNNNGG	3 cut(s)	87, 128, 1960
BsmAI	GTCTC	6 cut(s)	126, 1141, 1493, 1667, 1700, 1908
BsmFI	GGGAC	2 cut(s)	104, 1118
BsmI	GAATGC	1 cut(s)	1060
BsnI	GGCC	8 cut(s)	159, 269, 1000, 1193, 1203, 1365, 1381, 1510
Bso31I	GGTCTC	1 cut(s)	1141
Bsp1286I	GDGCHC	4 cut(s)	684, 1291, 1575, 1761
Bsp1407I	TGTACA	1 cut(s)	75
Bsp143I	GATC	8 cut(s)	862, 985, 1162, 1300, 1463, 1784, 1866, 1990
Bsp19I	CCATGG	1 cut(s)	424
BspACI	CCGC	3 cut(s)	52, 571, 573
BspANI	GGCC	8 cut(s)	159, 269, 1000, 1193, 1203, 1365, 1381, 1510
BspCNI	CTCAG	5 cut(s)	310, 313, 1651, 1696, 1822
BspDI	ATCGAT	1 cut(s)	1869
BspFNI	CGCG	1 cut(s)	573
BspLI	GGNNCC	5 cut(s)	802, 961, 987, 1443, 1465
BspMAI	CTGCAG	1 cut(s)	1099
BspMI	ACCTGC	1 cut(s)	1879
BspPI	GGATC	6 cut(s)	980, 993, 1295, 1458, 1471, 1998
BspT107I	GGYRCC	1 cut(s)	959
BspTNI	GGTCTC	1 cut(s)	1141
BsrDI	GCAATG	1 cut(s)	1037
BsrGI	TGTACA	1 cut(s)	75
BsrI	ACTGG	5 cut(s)	509, 802, 834, 1002, 1341
BssMI	GATC	8 cut(s)	862, 985, 1162, 1300, 1463, 1784, 1866, 1990
BssNAI	GTATAC	1 cut(s)	1157
BssT1I	CCWWGG	5 cut(s)	55, 424, 827, 1079, 1777
Bst1107I	GTATAC	1 cut(s)	1157
Bst2UI	CCWGG	6 cut(s)	129, 642, 1195, 1362, 1469, 2016
Bst4CI	ACNGT	7 cut(s)	197, 814, 1389, 1415, 1562, 1660, 2006
Bst6I	CTCTTC	2 cut(s)	941, 1109
BstAUI	TGTACA	1 cut(s)	75
BstBAI	YACGTR	1 cut(s)	1154
BstC8I	GCNNGC	2 cut(s)	755, 1095
BstDEI	CTNAG	7 cut(s)	297, 321, 335, 1638, 1680, 1704, 1830
BstDSI	CCRYGG	2 cut(s)	424, 571
BstEII	GGTNACC	1 cut(s)	1891
BstF5I	GGATG	6 cut(s)	352, 652, 765, 909, 1889, 2033
BstFNI	CGCG	1 cut(s)	573
BstH2I	RGCGCY	2 cut(s)	36, 1482
BstHHI	GCGC	3 cut(s)	35, 205, 1481
BstKTI	GATC	8 cut(s)	865, 988, 1165, 1303, 1466, 1787, 1869, 1993
BstMAI	GTCTC	6 cut(s)	126, 1141, 1493, 1667, 1700, 1908
BstMBI	GATC	8 cut(s)	862, 985, 1162, 1300, 1463, 1784, 1866, 1990
BstMWI	GCNNNNNNNGC	3 cut(s)	331, 586, 785
BstNI	CCWGG	6 cut(s)	129, 642, 1195, 1362, 1469, 2016
BstNSI	RCATGY	7 cut(s)	99, 387, 455, 654, 757, 1274, 1438
BstPI	GGTNACC	1 cut(s)	1891
BstSCI	CCNGG	7 cut(s)	101, 127, 640, 1193, 1360, 1467, 2014
BstSFI	CTRYAG	1 cut(s)	1095
BstSLI	GKGCMC	1 cut(s)	1291
BstUI	CGCG	1 cut(s)	573
BstV1I	GCAGC	3 cut(s)	271, 769, 1759
BstX2I	RGATCY	2 cut(s)	985, 1463
BstYI	RGATCY	2 cut(s)	985, 1463
BstZ17I	GTATAC	1 cut(s)	1157
Bsu15I	ATCGAT	1 cut(s)	1869
BsuI	GTATCC	1 cut(s)	1030
BsuRI	GGCC	8 cut(s)	159, 269, 1000, 1193, 1203, 1365, 1381, 1510
BsuTUI	ATCGAT	1 cut(s)	1869
BtgI	CCRYGG	2 cut(s)	424, 571
BtsCI	GGATG	6 cut(s)	352, 652, 765, 909, 1889, 2033
BtsI	GCAGTG	1 cut(s)	1885
BtsIMutI	CAGTG	5 cut(s)	22, 1348, 1420, 1794, 1885
BveI	ACCTGC	1 cut(s)	1879
Cac8I	GCNNGC	2 cut(s)	755, 1095
CfoI	GCGC	3 cut(s)	35, 205, 1481
Cfr13I	GGNCC	5 cut(s)	831, 999, 1202, 1508, 1792
Cfr42I	CCGCGG	1 cut(s)	574
ClaI	ATCGAT	1 cut(s)	1869
Csp6I	GTAC	5 cut(s)	76, 512, 612, 795, 960
CspCI	CAANNNNNGTGG	4 cut(s)	773, 808, 1582, 1617
CviQI	GTAC	5 cut(s)	76, 512, 612, 795, 960
DdeI	CTNAG	7 cut(s)	297, 321, 335, 1638, 1680, 1704, 1830
DpnI	GATC	8 cut(s)	864, 987, 1164, 1302, 1465, 1786, 1868, 1992
DpnII	GATC	8 cut(s)	862, 985, 1162, 1300, 1463, 1784, 1866, 1990
DrdI	GACNNNNNNGTC	1 cut(s)	1611
DseDI	GACNNNNNNGTC	1 cut(s)	1611
EaeI	YGGCCR	2 cut(s)	1191, 1379
Eam1104I	CTCTTC	2 cut(s)	941, 1109
EarI	CTCTTC	2 cut(s)	941, 1109
Ecl136II	GAGCTC	2 cut(s)	682, 1573
Eco130I	CCWWGG	5 cut(s)	55, 424, 827, 1079, 1777
Eco24I	GRGCYC	2 cut(s)	684, 1575
Eco31I	GGTCTC	1 cut(s)	1141
Eco47I	GGWCC	2 cut(s)	831, 1792
Eco53kI	GAGCTC	2 cut(s)	682, 1573
Eco57I	CTGAAG	2 cut(s)	951, 1043
Eco91I	GGTNACC	1 cut(s)	1891
EcoICRI	GAGCTC	2 cut(s)	682, 1573
EcoO65I	GGTNACC	1 cut(s)	1891
EcoRI	GAATTC	1 cut(s)	1949
EcoRII	CCWGG	6 cut(s)	127, 640, 1193, 1360, 1467, 2014
EcoT14I	CCWWGG	5 cut(s)	55, 424, 827, 1079, 1777
EcoT22I	ATGCAT	1 cut(s)	652
EcoT38I	GRGCYC	2 cut(s)	684, 1575
ErhI	CCWWGG	5 cut(s)	55, 424, 827, 1079, 1777
FalI	AAGNNNNNCTT	2 cut(s)	575, 607
FaqI	GGGAC	2 cut(s)	104, 1118
FauNDI	CATATG	3 cut(s)	181, 695, 859
FbaI	TGATCA	1 cut(s)	862
FblI	GTMKAC	1 cut(s)	1156
Fnu4HI	GCNGC	3 cut(s)	260, 758, 1773
FokI	GGATG	6 cut(s)	359, 659, 752, 916, 1896, 2020
FriOI	GRGCYC	2 cut(s)	684, 1575
Fsp4HI	GCNGC	3 cut(s)	260, 758, 1773
FspBI	CTAG	3 cut(s)	600, 1283, 1599
GlaI	GCGC	3 cut(s)	34, 204, 1480
GluI	GCNGC	3 cut(s)	260, 758, 1773
GsuI	CTGGAG	2 cut(s)	150, 1344
HaeII	RGCGCY	2 cut(s)	36, 1482
HaeIII	GGCC	8 cut(s)	159, 269, 1000, 1193, 1203, 1365, 1381, 1510
HapII	CCGG	1 cut(s)	102
HhaI	GCGC	3 cut(s)	35, 205, 1481
Hin6I	GCGC	3 cut(s)	33, 203, 1479
HinP1I	GCGC	3 cut(s)	33, 203, 1479
HincII	GTYRAC	3 cut(s)	46, 1392, 1411
HindII	GTYRAC	3 cut(s)	46, 1392, 1411
HinfI	GANTC	8 cut(s)	235, 432, 909, 1100, 1357, 1501, 1545, 2011
HpaI	GTTAAC	1 cut(s)	46
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	4 cut(s)	71, 870, 1572, 1829
Hpy188III	TCNNGA	3 cut(s)	1253, 1461, 1994
HpyAV	CCTTC	7 cut(s)	790, 950, 1018, 1587, 1850, 1854, 1904
HpyCH4III	ACNGT	7 cut(s)	197, 814, 1389, 1415, 1562, 1660, 2006
HpyCH4IV	ACGT	1 cut(s)	1153
HpyF10VI	GCNNNNNNNGC	3 cut(s)	331, 586, 785
HpyF3I	CTNAG	7 cut(s)	297, 321, 335, 1638, 1680, 1704, 1830
HpySE526I	ACGT	1 cut(s)	1153
HspAI	GCGC	3 cut(s)	33, 203, 1479
KpnI	GGTACC	1 cut(s)	963
Ksp22I	TGATCA	1 cut(s)	862
KspAI	GTTAAC	1 cut(s)	46
KspI	CCGCGG	1 cut(s)	574
Kzo9I	GATC	8 cut(s)	862, 985, 1162, 1300, 1463, 1784, 1866, 1990
LmnI	GCTCC	6 cut(s)	22, 361, 687, 1570, 1578, 1769
Lsp1109I	GCAGC	3 cut(s)	271, 769, 1759
LweI	GCATC	3 cut(s)	637, 774, 1911
MaeI	CTAG	3 cut(s)	600, 1283, 1599
MaeII	ACGT	1 cut(s)	1153
MaeIII	GTNAC	4 cut(s)	316, 619, 1562, 1891
MalI	GATC	8 cut(s)	864, 987, 1164, 1302, 1465, 1786, 1868, 1992
MboI	GATC	8 cut(s)	862, 985, 1162, 1300, 1463, 1784, 1866, 1990
MboII	GAAGA	4 cut(s)	944, 958, 1126, 1794
MflI	RGATCY	2 cut(s)	985, 1463
MhlI	GDGCHC	4 cut(s)	684, 1291, 1575, 1761
MlsI	TGGCCA	2 cut(s)	1193, 1381
MluCI	AATT	7 cut(s)	220, 852, 1472, 1549, 1594, 1632, 1949
MluNI	TGGCCA	2 cut(s)	1193, 1381
MlyI	GAGTC	3 cut(s)	1351, 1495, 1554
MmeI	TCCRAC	2 cut(s)	587, 1687
Mox20I	TGGCCA	2 cut(s)	1193, 1381
Mph1103I	ATGCAT	1 cut(s)	652
MscI	TGGCCA	2 cut(s)	1193, 1381
MseI	TTAA	7 cut(s)	45, 252, 975, 1214, 1371, 1475, 1610
MslI	CAYNNNNRTG	4 cut(s)	96, 282, 1275, 1754
Msp20I	TGGCCA	2 cut(s)	1193, 1381
MspA1I	CMGCKG	1 cut(s)	573
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	7 cut(s)	103, 129, 642, 1195, 1362, 1469, 2016
Mva1269I	GAATGC	1 cut(s)	1060
MvaI	CCWGG	6 cut(s)	129, 642, 1195, 1362, 1469, 2016
MvnI	CGCG	1 cut(s)	573
MwoI	GCNNNNNNNGC	3 cut(s)	331, 586, 785
NciI	CCSGG	1 cut(s)	103
NcoI	CCATGG	1 cut(s)	424
NdeI	CATATG	3 cut(s)	181, 695, 859
NdeII	GATC	8 cut(s)	862, 985, 1162, 1300, 1463, 1784, 1866, 1990
NlaIV	GGNNCC	5 cut(s)	802, 961, 987, 1443, 1465
NmeAIII	GCCGAG	1 cut(s)	481
NmuCI	GTSAC	3 cut(s)	316, 619, 1562
NsiI	ATGCAT	1 cut(s)	652
NspI	RCATGY	7 cut(s)	99, 387, 455, 654, 757, 1274, 1438
PaeI	GCATGC	1 cut(s)	757
PciI	ACATGT	1 cut(s)	95
PctI	GAATGC	1 cut(s)	1060
PfeI	GAWTC	5 cut(s)	235, 432, 909, 1100, 2011
PflMI	CCANNNNNTGG	1 cut(s)	128
PkrI	GCNGC	3 cut(s)	261, 759, 1774
PleI	GAGTC	3 cut(s)	1351, 1495, 1553
PpsI	GAGTC	3 cut(s)	1351, 1495, 1553
Ppu21I	YACGTR	1 cut(s)	1154
PscI	ACATGT	1 cut(s)	95
PshBI	ATTAAT	1 cut(s)	1214
Psp124BI	GAGCTC	2 cut(s)	684, 1575
Psp6I	CCWGG	6 cut(s)	127, 640, 1193, 1360, 1467, 2014
PspEI	GGTNACC	1 cut(s)	1891
PspGI	CCWGG	6 cut(s)	127, 640, 1193, 1360, 1467, 2014
PspN4I	GGNNCC	5 cut(s)	802, 961, 987, 1443, 1465
PspPI	GGNCC	5 cut(s)	831, 999, 1202, 1508, 1792
PsrI	GAACNNNNNNTAC	2 cut(s)	793, 825
PstI	CTGCAG	1 cut(s)	1099
PsuI	RGATCY	2 cut(s)	985, 1463
RsaI	GTAC	5 cut(s)	77, 513, 613, 796, 961
RsaNI	GTAC	5 cut(s)	76, 512, 612, 795, 960
RseI	CAYNNNNRTG	4 cut(s)	96, 282, 1275, 1754
SacI	GAGCTC	2 cut(s)	684, 1575
SacII	CCGCGG	1 cut(s)	574
SaqAI	TTAA	7 cut(s)	45, 252, 975, 1214, 1371, 1475, 1610
SatI	GCNGC	3 cut(s)	260, 758, 1773
Sau3AI	GATC	8 cut(s)	862, 985, 1162, 1300, 1463, 1784, 1866, 1990
Sau96I	GGNCC	5 cut(s)	831, 999, 1202, 1508, 1792
SchI	GAGTC	3 cut(s)	1351, 1495, 1554
ScrFI	CCNGG	7 cut(s)	103, 129, 642, 1195, 1362, 1469, 2016
SduI	GDGCHC	4 cut(s)	684, 1291, 1575, 1761
SfaNI	GCATC	3 cut(s)	637, 774, 1911
SfcI	CTRYAG	1 cut(s)	1095
Sfr303I	CCGCGG	1 cut(s)	574
SgrBI	CCGCGG	1 cut(s)	574
SinI	GGWCC	2 cut(s)	831, 1792
SmiMI	CAYNNNNRTG	4 cut(s)	96, 282, 1275, 1754
SmlI	CTYRAG	3 cut(s)	153, 1503, 1760
SmoI	CTYRAG	3 cut(s)	153, 1503, 1760
SpeI	ACTAGT	1 cut(s)	599
SphI	GCATGC	1 cut(s)	757
Sse9I	AATT	7 cut(s)	220, 852, 1472, 1549, 1594, 1632, 1949
SsiI	CCGC	3 cut(s)	52, 571, 573
SspI	AATATT	1 cut(s)	893
SspMI	CTAG	3 cut(s)	600, 1283, 1599
SstI	GAGCTC	2 cut(s)	684, 1575
StyD4I	CCNGG	7 cut(s)	101, 127, 640, 1193, 1360, 1467, 2014
StyI	CCWWGG	5 cut(s)	55, 424, 827, 1079, 1777
TaaI	ACNGT	7 cut(s)	197, 814, 1389, 1415, 1562, 1660, 2006
TaiI	ACGT	1 cut(s)	1156
TaqI	TCGA	2 cut(s)	1869, 2001
TasI	AATT	7 cut(s)	220, 852, 1472, 1549, 1594, 1632, 1949
TatI	WGTACW	4 cut(s)	75, 511, 611, 794
TfiI	GAWTC	5 cut(s)	235, 432, 909, 1100, 2011
Tru1I	TTAA	7 cut(s)	45, 252, 975, 1214, 1371, 1475, 1610
Tru9I	TTAA	7 cut(s)	45, 252, 975, 1214, 1371, 1475, 1610
TscAI	CASTG	5 cut(s)	22, 1348, 1420, 1794, 1885
TseFI	GTSAC	3 cut(s)	316, 619, 1562
TseI	GCWGC	3 cut(s)	259, 757, 1772
Tsp45I	GTSAC	3 cut(s)	316, 619, 1562
TspGWI	ACGGA	1 cut(s)	674
TspRI	CASTG	5 cut(s)	22, 1348, 1420, 1794, 1885
Van91I	CCANNNNNTGG	1 cut(s)	128
VneI	GTGCAC	1 cut(s)	1287
VpaK11BI	GGWCC	2 cut(s)	831, 1792
VspI	ATTAAT	1 cut(s)	1214
XapI	RAATTY	1 cut(s)	1949
XceI	RCATGY	7 cut(s)	99, 387, 455, 654, 757, 1274, 1438
XmiI	GTMKAC	1 cut(s)	1156
XspI	CTAG	3 cut(s)	600, 1283, 1599
Zsp2I	ATGCAT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.