pycom03g21940

Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
22123886 .. 22125861
1976 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g21940.1

Sequence Viewer

Length: 1263 bp
ATGCAACATGGCATACTTGCCAGCGCTTTCCATGCCATTTCTACTGGTACCATGTTTACTGTGTACTACCACCCATGGACGAGTCCTGCTGCATTCATAATTCCTTTTGATCGATACATGAAATCAGCCGAAAATGACTATTCCATTGGAATGAGATTCAGAATGTATTCCGAAGGTGAAGAATGTGCAGAGAAGAAGAGGTTGGAAGGTACTATAATAGATATCGAAGATAACGATTGCTTGATGTGGCCCAGTTCAGAATGGAGGTGTCTGAAGGTGCGATTGGATACTACATCAGATACATGCTTGCATTCCGAAAGGCTTTCTCCTTGGAATATCATACCTCTCCAACCTAAGAAGAGGGCACATTTACCTGATCCGCCATCACCTGGTGTTTCTAGCTTGGGCAGGAAAGGTTCATTGGCGATTTCAGTTGAGTCCACACCTCCAAGACAAAAGAAGGTCTTTCAAGGTCAAGAAACTAGTGATCCACCTGCTCATGAACCAGTTACACCAAAACAGCTATTACTGCCACAGTTCATCCCACCCCCAAATCCTGACTGGGACTACACAGATTTGGGATTGGAAAACAATCTCAACGTTCCAATGAACGACCCATTTTACCAATGTCCTGGCTATCCAAAAGCTCCAAGCCTTACTAACCAATGGCCACCAATGTTTGGTTTTGGAGTCTTTGACAGTGGCACGTATAAAAGAAGCATGTCAGTTCCAAATATCAGCTCCTCGGTGTCCCAGAAATTGAGAGCCTTCGAACTGAGGAGTGAGACTCAATCGCCACTTGTCGAACAAAAGAGTACAATGCTTTTTGGAGTCAATATAGTTACCAGTCACCCAGAGCTCCCTTCACCACAAGTTGCCAATTCTATTGAACTTTGTAGTCCTTGTTCTATTCCTCCAATATCTCATTCAAGTGTTTCTGAAACAGTCCAGCTGTCAGAGACATCAAAGAGTATCTCTGGCGTTCTTTCTGAGAAACAATGCAAGAAATGTAGCTCCGTCAATAACAGGAGTTGCATAAAGGTGCTCAAATATGGAGCTCCTGTTGGAAGATCAATTGACCTCACGCGCTTTGATGGGTACAACGAACTCATTTGTGAGCTTGACCAGATGTTCGATTTCAAAGGAAGCCTGATCGATGGAAACAGTGGATGCCAGGTAACCTACATGGATGATGAAGGAGACAGGATGTTGATAGGAGATTACCCGTGGCAGTTAAGAACTAGAACTCATGCTGTGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

421

Amino Acids

46.95

Weight (kDa)

5.77

Isoelectric Point (pI)

54.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRWD_AD PF25313 14 - 117 6.5e-07 BRWD/PHIP ancillary domain-like domain
ARF_AD PF06507 32 - 116 2.9e-25 Auxin response factor ancillary domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 502
Acc36I ACCTGC 1 cut(s) 502
Acc65I GGTACC 1 cut(s) 47
AccB1I GGYRCC 1 cut(s) 47
AccB7I CCANNNNNTGG 2 cut(s) 389, 680
AccII CGCG 1 cut(s) 1087
AciI CCGC 1 cut(s) 380
AclI AACGTT 1 cut(s) 600
AclWI GGATC 2 cut(s) 371, 482
AcoI YGGCCR 1 cut(s) 668
AcuI CTGAAG 1 cut(s) 293
AdeI CACNNNGTG 1 cut(s) 392
AfaI GTAC 5 cut(s) 49, 65, 211, 817, 1100
AfeI AGCGCT 1 cut(s) 25
AfiI CCNNNNNNNGG 2 cut(s) 389, 680
AgsI TTSAA 4 cut(s) 470, 890, 930, 1141
AhlI ACTAGT 1 cut(s) 482
AjnI CCWGG 3 cut(s) 388, 631, 1173
AjuI GAANNNNNNNTTGG 8 cut(s) 185, 217, 266, 298, 404, 436, 910, 942
AluBI AGCT 9 cut(s) 402, 523, 647, 741, 859, 952, 1014, 1058, 1120
AluI AGCT 9 cut(s) 402, 523, 647, 741, 859, 952, 1014, 1058, 1120
Alw21I GWGCWC 3 cut(s) 861, 1047, 1060
Alw26I GTCTC 3 cut(s) 779, 953, 1194
AlwI GGATC 2 cut(s) 371, 482
Aor51HI AGCGCT 1 cut(s) 25
AoxI GGCC 2 cut(s) 248, 668
ApeKI GCWGC 1 cut(s) 89
ArsI GACNNNNNNTTYG 2 cut(s) 1115, 1147
Asp700I GAANNNNTTC 1 cut(s) 166
Asp718I GGTACC 1 cut(s) 47
AspLEI GCGC 2 cut(s) 26, 1089
AspS9I GGNCC 1 cut(s) 249
AsuHPI GGTGA 4 cut(s) 188, 378, 842, 858
AsuII TTCGAA 1 cut(s) 771
BaeGI GKGCMC 1 cut(s) 367
BalI TGGCCA 1 cut(s) 670
BanI GGYRCC 1 cut(s) 47
BanII GRGCYC 2 cut(s) 861, 1060
Bbv12I GWGCWC 3 cut(s) 861, 1047, 1060
BbvI GCAGC 1 cut(s) 76
BccI CCATC 3 cut(s) 391, 1088, 1151
BciT130I CCWGG 3 cut(s) 390, 633, 1175
BciVI GTATCC 1 cut(s) 280
BcoDI GTCTC 3 cut(s) 779, 953, 1194
BcuI ACTAGT 1 cut(s) 482
BfaI CTAG 3 cut(s) 399, 483, 1242
BfoI RGCGCY 1 cut(s) 27
BfuAI ACCTGC 1 cut(s) 502
BfuI GTATCC 1 cut(s) 280
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 3 cut(s) 390, 633, 1175
BmgT120I GGNCC 1 cut(s) 249
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 3 cut(s) 390, 633, 1175
BmrI ACTGGG 2 cut(s) 246, 571
BmsI GCATC 1 cut(s) 1160
BmuI ACTGGG 2 cut(s) 246, 571
BplI GAGNNNNNCTC 2 cut(s) 772, 804
Bpu14I TTCGAA 1 cut(s) 771
Bsa29I ATCGAT 2 cut(s) 112, 1155
BsaAI YACGTR 1 cut(s) 708
BsaJI CCNNGG 4 cut(s) 74, 329, 744, 1226
BsaXI ACNNNNNCTCC 2 cut(s) 1047, 1077
Bsc4I CCNNNNNNNGG 2 cut(s) 389, 680
Bse1I ACTGG 5 cut(s) 49, 252, 506, 566, 846
BseBI CCWGG 3 cut(s) 390, 633, 1175
BseCI ATCGAT 2 cut(s) 112, 1155
BseDI CCNNGG 4 cut(s) 74, 329, 744, 1226
BseGI GGATG 4 cut(s) 540, 1175, 1195, 1212
BseLI CCNNNNNNNGG 2 cut(s) 389, 680
BseMII CTCAG 2 cut(s) 767, 981
BseNI ACTGG 5 cut(s) 49, 252, 506, 566, 846
BseRI GAGGAG 2 cut(s) 733, 793
BseSI GKGCMC 1 cut(s) 367
BseXI GCAGC 1 cut(s) 76
BsgI GTGCAG 1 cut(s) 207
Bsh1236I CGCG 1 cut(s) 1087
BshFI GGCC 2 cut(s) 250, 670
BshNI GGYRCC 1 cut(s) 47
BshVI ATCGAT 2 cut(s) 112, 1155
BsiHKAI GWGCWC 3 cut(s) 861, 1047, 1060
BslFI GGGAC 2 cut(s) 578, 736
BslI CCNNNNNNNGG 2 cut(s) 389, 680
BsmAI GTCTC 3 cut(s) 779, 953, 1194
BsmFI GGGAC 2 cut(s) 578, 736
BsmI GAATGC 2 cut(s) 92, 310
BsnI GGCC 2 cut(s) 250, 670
Bsp119I TTCGAA 1 cut(s) 771
Bsp1286I GDGCHC 4 cut(s) 367, 861, 1047, 1060
Bsp143I GATC 5 cut(s) 109, 376, 487, 1070, 1152
Bsp19I CCATGG 1 cut(s) 74
BspACI CCGC 1 cut(s) 380
BspANI GGCC 2 cut(s) 250, 670
BspCNI CTCAG 2 cut(s) 768, 982
BspDI ATCGAT 2 cut(s) 112, 1155
BspFNI CGCG 1 cut(s) 1087
BspHI TCATGA 1 cut(s) 499
BspLI GGNNCC 1 cut(s) 49
BspMI ACCTGC 1 cut(s) 502
BspPI GGATC 2 cut(s) 371, 482
BspT104I TTCGAA 1 cut(s) 771
BspT107I GGYRCC 1 cut(s) 47
BsrI ACTGG 5 cut(s) 49, 252, 506, 566, 846
BssECI CCNNGG 4 cut(s) 74, 329, 744, 1226
BssMI GATC 5 cut(s) 109, 376, 487, 1070, 1152
BssT1I CCWWGG 2 cut(s) 74, 329
Bst2UI CCWGG 3 cut(s) 390, 633, 1175
Bst4CI ACNGT 5 cut(s) 61, 537, 701, 946, 1166
Bst6I CTCTTC 2 cut(s) 191, 353
BstBAI YACGTR 1 cut(s) 708
BstBI TTCGAA 1 cut(s) 771
BstC8I GCNNGC 2 cut(s) 22, 308
BstDEI CTNAG 3 cut(s) 354, 776, 990
BstDSI CCRYGG 2 cut(s) 74, 1226
BstEII GGTNACC 1 cut(s) 1177
BstF5I GGATG 4 cut(s) 540, 1175, 1195, 1212
BstFNI CGCG 1 cut(s) 1087
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 2 cut(s) 26, 1089
BstKTI GATC 5 cut(s) 112, 379, 490, 1073, 1155
BstMAI GTCTC 3 cut(s) 779, 953, 1194
BstMBI GATC 5 cut(s) 109, 376, 487, 1070, 1152
BstMWI GCNNNNNNNGC 2 cut(s) 32, 529
BstNI CCWGG 3 cut(s) 390, 633, 1175
BstNSI RCATGY 2 cut(s) 306, 724
BstPI GGTNACC 1 cut(s) 1177
BstSCI CCNGG 3 cut(s) 388, 631, 1173
BstSLI GKGCMC 1 cut(s) 367
BstUI CGCG 1 cut(s) 1087
BstV1I GCAGC 1 cut(s) 76
BstXI CCANNNNNNTGG 1 cut(s) 632
Bsu15I ATCGAT 2 cut(s) 112, 1155
BsuI GTATCC 1 cut(s) 280
BsuRI GGCC 2 cut(s) 250, 670
BsuTUI ATCGAT 2 cut(s) 112, 1155
BtgI CCRYGG 2 cut(s) 74, 1226
BtsCI GGATG 4 cut(s) 540, 1175, 1195, 1212
BtsIMutI CAGTG 2 cut(s) 706, 1171
BveI ACCTGC 1 cut(s) 502
Cac8I GCNNGC 2 cut(s) 22, 308
CciI TCATGA 1 cut(s) 499
CfoI GCGC 2 cut(s) 26, 1089
Cfr13I GGNCC 1 cut(s) 249
ClaI ATCGAT 2 cut(s) 112, 1155
CsiI ACCWGGT 1 cut(s) 388
Csp6I GTAC 5 cut(s) 48, 64, 210, 816, 1099
CviQI GTAC 5 cut(s) 48, 64, 210, 816, 1099
DdeI CTNAG 3 cut(s) 354, 776, 990
DpnI GATC 5 cut(s) 111, 378, 489, 1072, 1154
DpnII GATC 5 cut(s) 109, 376, 487, 1070, 1152
DraIII CACNNNGTG 1 cut(s) 392
EaeI YGGCCR 1 cut(s) 668
Eam1104I CTCTTC 2 cut(s) 191, 353
EarI CTCTTC 2 cut(s) 191, 353
EciI GGCGGA 1 cut(s) 369
Ecl136II GAGCTC 2 cut(s) 859, 1058
Eco130I CCWWGG 2 cut(s) 74, 329
Eco24I GRGCYC 2 cut(s) 861, 1060
Eco32I GATATC 1 cut(s) 223
Eco47III AGCGCT 1 cut(s) 25
Eco53kI GAGCTC 2 cut(s) 859, 1058
Eco57I CTGAAG 1 cut(s) 293
Eco91I GGTNACC 1 cut(s) 1177
EcoICRI GAGCTC 2 cut(s) 859, 1058
EcoO65I GGTNACC 1 cut(s) 1177
EcoRII CCWGG 3 cut(s) 388, 631, 1173
EcoRV GATATC 1 cut(s) 223
EcoT14I CCWWGG 2 cut(s) 74, 329
EcoT38I GRGCYC 2 cut(s) 861, 1060
ErhI CCWWGG 2 cut(s) 74, 329
FalI AAGNNNNNCTT 2 cut(s) 449, 481
FaqI GGGAC 2 cut(s) 578, 736
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 4 cut(s) 527, 1182, 1202, 1219
FriOI GRGCYC 2 cut(s) 861, 1060
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 3 cut(s) 399, 483, 1242
GlaI GCGC 2 cut(s) 25, 1088
GluI GCNGC 1 cut(s) 90
HaeII RGCGCY 1 cut(s) 27
HaeIII GGCC 2 cut(s) 250, 670
HhaI GCGC 2 cut(s) 26, 1089
Hin6I GCGC 2 cut(s) 24, 1087
HinP1I GCGC 2 cut(s) 24, 1087
HinfI GANTC 6 cut(s) 82, 156, 437, 690, 787, 831
HphI GGTGA 4 cut(s) 188, 378, 842, 858
Hpy166II GTNNAC 3 cut(s) 57, 64, 441
Hpy188I TCNGA 9 cut(s) 161, 172, 259, 273, 298, 316, 940, 958, 991
Hpy188III TCNNGA 3 cut(s) 476, 500, 557
Hpy8I GTNNAC 3 cut(s) 57, 64, 441
HpyAV CCTTC 7 cut(s) 167, 200, 268, 454, 778, 873, 1190
HpyCH4III ACNGT 5 cut(s) 61, 537, 701, 946, 1166
HpyCH4IV ACGT 2 cut(s) 600, 707
HpyCH4V TGCA 6 cut(s) 4, 92, 188, 310, 1002, 1035
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 529
HpyF3I CTNAG 3 cut(s) 354, 776, 990
HpySE526I ACGT 2 cut(s) 600, 707
HspAI GCGC 2 cut(s) 24, 1087
KpnI GGTACC 1 cut(s) 51
Kzo9I GATC 5 cut(s) 109, 376, 487, 1070, 1152
LmnI GCTCC 6 cut(s) 652, 746, 864, 1019, 1055, 1063
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 1 cut(s) 1160
MabI ACCWGGT 1 cut(s) 388
MaeI CTAG 3 cut(s) 399, 483, 1242
MaeII ACGT 2 cut(s) 600, 707
MaeIII GTNAC 5 cut(s) 508, 841, 848, 1177, 1255
MalI GATC 5 cut(s) 111, 378, 489, 1072, 1154
MboI GATC 5 cut(s) 109, 376, 487, 1070, 1152
MboII GAAGA 6 cut(s) 191, 205, 208, 239, 370, 1080
MfeI CAATTG 1 cut(s) 1074
MhlI GDGCHC 4 cut(s) 367, 861, 1047, 1060
MlsI TGGCCA 1 cut(s) 670
MluCI AATT 4 cut(s) 99, 758, 880, 1074
MluNI TGGCCA 1 cut(s) 670
MlyI GAGTC 5 cut(s) 91, 446, 699, 781, 840
MmeI TCCRAC 3 cut(s) 183, 373, 1045
MnlI CCTC 9 cut(s) 192, 258, 354, 354, 456, 754, 771, 924, 1091
Mox20I TGGCCA 1 cut(s) 670
MroXI GAANNNNTTC 1 cut(s) 166
MscI TGGCCA 1 cut(s) 670
MseI TTAA 2 cut(s) 1235, 1261
MslI CAYNNNNRTG 3 cut(s) 149, 930, 1040
Msp20I TGGCCA 1 cut(s) 670
MspA1I CMGCKG 1 cut(s) 952
MspR9I CCNGG 3 cut(s) 390, 633, 1175
MunI CAATTG 1 cut(s) 1074
Mva1269I GAATGC 2 cut(s) 92, 310
MvaI CCWGG 3 cut(s) 390, 633, 1175
MvnI CGCG 1 cut(s) 1087
MwoI GCNNNNNNNGC 2 cut(s) 32, 529
NcoI CCATGG 1 cut(s) 74
NdeII GATC 5 cut(s) 109, 376, 487, 1070, 1152
NlaIV GGNNCC 1 cut(s) 49
NmuCI GTSAC 2 cut(s) 848, 1255
NspI RCATGY 2 cut(s) 306, 724
NspV TTCGAA 1 cut(s) 771
PagI TCATGA 1 cut(s) 499
PaqCI CACCTGC 1 cut(s) 502
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PctI GAATGC 2 cut(s) 92, 310
PdmI GAANNNNTTC 1 cut(s) 166
PfeI GAWTC 1 cut(s) 156
PflMI CCANNNNNTGG 2 cut(s) 389, 680
PkrI GCNGC 1 cut(s) 91
PleI GAGTC 5 cut(s) 90, 445, 698, 781, 839
PpsI GAGTC 5 cut(s) 90, 445, 698, 781, 839
Ppu21I YACGTR 1 cut(s) 708
Psp124BI GAGCTC 2 cut(s) 861, 1060
Psp1406I AACGTT 1 cut(s) 600
Psp6I CCWGG 3 cut(s) 388, 631, 1173
PspEI GGTNACC 1 cut(s) 1177
PspGI CCWGG 3 cut(s) 388, 631, 1173
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 1 cut(s) 249
PsrI GAACNNNNNNTAC 2 cut(s) 889, 921
PvuII CAGCTG 1 cut(s) 952
RsaI GTAC 5 cut(s) 49, 65, 211, 817, 1100
RsaNI GTAC 5 cut(s) 48, 64, 210, 816, 1099
RseI CAYNNNNRTG 3 cut(s) 149, 930, 1040
SacI GAGCTC 2 cut(s) 861, 1060
SaqAI TTAA 2 cut(s) 1235, 1261
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 5 cut(s) 109, 376, 487, 1070, 1152
Sau96I GGNCC 1 cut(s) 249
SchI GAGTC 5 cut(s) 91, 446, 699, 781, 840
ScrFI CCNGG 3 cut(s) 390, 633, 1175
SduI GDGCHC 4 cut(s) 367, 861, 1047, 1060
SexAI ACCWGGT 1 cut(s) 388
SfaNI GCATC 1 cut(s) 1160
SfuI TTCGAA 1 cut(s) 771
SmiMI CAYNNNNRTG 3 cut(s) 149, 930, 1040
SpeI ACTAGT 1 cut(s) 482
Sse9I AATT 4 cut(s) 99, 758, 880, 1074
SsiI CCGC 1 cut(s) 380
SspMI CTAG 3 cut(s) 399, 483, 1242
SstI GAGCTC 2 cut(s) 861, 1060
StyD4I CCNGG 3 cut(s) 388, 631, 1173
StyI CCWWGG 2 cut(s) 74, 329
TaaI ACNGT 5 cut(s) 61, 537, 701, 946, 1166
TaiI ACGT 2 cut(s) 603, 710
TaqI TCGA 6 cut(s) 112, 225, 771, 804, 1134, 1155
TasI AATT 4 cut(s) 99, 758, 880, 1074
TatI WGTACW 2 cut(s) 63, 815
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 2 cut(s) 1235, 1261
Tru9I TTAA 2 cut(s) 1235, 1261
TscAI CASTG 2 cut(s) 706, 1171
TseFI GTSAC 2 cut(s) 848, 1255
TseI GCWGC 1 cut(s) 89
Tsp45I GTSAC 2 cut(s) 848, 1255
TspDTI ATGAA 7 cut(s) 85, 134, 408, 516, 529, 623, 1209
TspGWI ACGGA 1 cut(s) 1006
TspRI CASTG 2 cut(s) 706, 1171
Van91I CCANNNNNTGG 2 cut(s) 389, 680
XceI RCATGY 2 cut(s) 306, 724
XcmI CCANNNNNNNNNTGG 1 cut(s) 558
XmnI GAANNNNTTC 1 cut(s) 166
XspI CTAG 3 cut(s) 399, 483, 1242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.