Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g24730 FvH4_2g24730 FvH4_2g24730 FvH4_5g06540 |
| malus_domestica | MD00G1056300.v1.1 MD05G1338500.v1.1 MD11G1297900.v1.1 |
| prunus_persica | Prupe.8G252300_v2.0.a1 |
| pyrus_communis | pycom02g21520 pycom03g21940 pycom03g21950 pycom05g12140 pycom11g26170 pycom16g06400 pycom16g24090 |
| rosa_chinensis | RchiOBHm_Chr6g0292551 |
| rosa_laevigata | RLG00000012010 |
| rosa_multiflora | Rmu_co8118566.1_g000001 Rmu_sc0000515.1_g000001 Rmu_sc0003486.1_g000005 Rmu_sc0004825.1_g000018 |
| rosa_roxburghii | Rroxscaffold_4G00318020 Rroxscaffold_7G00174940 |
| rosa_rugosa | Rorug06G0227900 |
| rosa_samantha | Rh5AG357200 Rh5DG382900 Rh6AG341000 Rh6AG341100 Rh6BG089400 Rh6BG348500 Rh6CG355300 Rh6CG355400 Rh6DG341100 Rh6DG341200 |
| rosa_wichuraiana | Rw6G029710 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 502 |
| Acc36I | ACCTGC | 1 cut(s) | 502 |
| Acc65I | GGTACC | 1 cut(s) | 47 |
| AccB1I | GGYRCC | 1 cut(s) | 47 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 389, 680 |
| AccII | CGCG | 1 cut(s) | 1087 |
| AciI | CCGC | 1 cut(s) | 380 |
| AclI | AACGTT | 1 cut(s) | 600 |
| AclWI | GGATC | 2 cut(s) | 371, 482 |
| AcoI | YGGCCR | 1 cut(s) | 668 |
| AcuI | CTGAAG | 1 cut(s) | 293 |
| AdeI | CACNNNGTG | 1 cut(s) | 392 |
| AfaI | GTAC | 5 cut(s) | 49, 65, 211, 817, 1100 |
| AfeI | AGCGCT | 1 cut(s) | 25 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 389, 680 |
| AgsI | TTSAA | 4 cut(s) | 470, 890, 930, 1141 |
| AhlI | ACTAGT | 1 cut(s) | 482 |
| AjnI | CCWGG | 3 cut(s) | 388, 631, 1173 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 185, 217, 266, 298, 404, 436, 910, 942 |
| AluBI | AGCT | 9 cut(s) | 402, 523, 647, 741, 859, 952, 1014, 1058, 1120 |
| AluI | AGCT | 9 cut(s) | 402, 523, 647, 741, 859, 952, 1014, 1058, 1120 |
| Alw21I | GWGCWC | 3 cut(s) | 861, 1047, 1060 |
| Alw26I | GTCTC | 3 cut(s) | 779, 953, 1194 |
| AlwI | GGATC | 2 cut(s) | 371, 482 |
| Aor51HI | AGCGCT | 1 cut(s) | 25 |
| AoxI | GGCC | 2 cut(s) | 248, 668 |
| ApeKI | GCWGC | 1 cut(s) | 89 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1115, 1147 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 166 |
| Asp718I | GGTACC | 1 cut(s) | 47 |
| AspLEI | GCGC | 2 cut(s) | 26, 1089 |
| AspS9I | GGNCC | 1 cut(s) | 249 |
| AsuHPI | GGTGA | 4 cut(s) | 188, 378, 842, 858 |
| AsuII | TTCGAA | 1 cut(s) | 771 |
| BaeGI | GKGCMC | 1 cut(s) | 367 |
| BalI | TGGCCA | 1 cut(s) | 670 |
| BanI | GGYRCC | 1 cut(s) | 47 |
| BanII | GRGCYC | 2 cut(s) | 861, 1060 |
| Bbv12I | GWGCWC | 3 cut(s) | 861, 1047, 1060 |
| BbvI | GCAGC | 1 cut(s) | 76 |
| BccI | CCATC | 3 cut(s) | 391, 1088, 1151 |
| BciT130I | CCWGG | 3 cut(s) | 390, 633, 1175 |
| BciVI | GTATCC | 1 cut(s) | 280 |
| BcoDI | GTCTC | 3 cut(s) | 779, 953, 1194 |
| BcuI | ACTAGT | 1 cut(s) | 482 |
| BfaI | CTAG | 3 cut(s) | 399, 483, 1242 |
| BfoI | RGCGCY | 1 cut(s) | 27 |
| BfuAI | ACCTGC | 1 cut(s) | 502 |
| BfuI | GTATCC | 1 cut(s) | 280 |
| BisI | GCNGC | 1 cut(s) | 90 |
| BlsI | GCNGC | 1 cut(s) | 91 |
| Bme1390I | CCNGG | 3 cut(s) | 390, 633, 1175 |
| BmgT120I | GGNCC | 1 cut(s) | 249 |
| BmiI | GGNNCC | 1 cut(s) | 49 |
| BmrFI | CCNGG | 3 cut(s) | 390, 633, 1175 |
| BmrI | ACTGGG | 2 cut(s) | 246, 571 |
| BmsI | GCATC | 1 cut(s) | 1160 |
| BmuI | ACTGGG | 2 cut(s) | 246, 571 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 772, 804 |
| Bpu14I | TTCGAA | 1 cut(s) | 771 |
| Bsa29I | ATCGAT | 2 cut(s) | 112, 1155 |
| BsaAI | YACGTR | 1 cut(s) | 708 |
| BsaJI | CCNNGG | 4 cut(s) | 74, 329, 744, 1226 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1047, 1077 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 389, 680 |
| Bse1I | ACTGG | 5 cut(s) | 49, 252, 506, 566, 846 |
| BseBI | CCWGG | 3 cut(s) | 390, 633, 1175 |
| BseCI | ATCGAT | 2 cut(s) | 112, 1155 |
| BseDI | CCNNGG | 4 cut(s) | 74, 329, 744, 1226 |
| BseGI | GGATG | 4 cut(s) | 540, 1175, 1195, 1212 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 389, 680 |
| BseMII | CTCAG | 2 cut(s) | 767, 981 |
| BseNI | ACTGG | 5 cut(s) | 49, 252, 506, 566, 846 |
| BseRI | GAGGAG | 2 cut(s) | 733, 793 |
| BseSI | GKGCMC | 1 cut(s) | 367 |
| BseXI | GCAGC | 1 cut(s) | 76 |
| BsgI | GTGCAG | 1 cut(s) | 207 |
| Bsh1236I | CGCG | 1 cut(s) | 1087 |
| BshFI | GGCC | 2 cut(s) | 250, 670 |
| BshNI | GGYRCC | 1 cut(s) | 47 |
| BshVI | ATCGAT | 2 cut(s) | 112, 1155 |
| BsiHKAI | GWGCWC | 3 cut(s) | 861, 1047, 1060 |
| BslFI | GGGAC | 2 cut(s) | 578, 736 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 389, 680 |
| BsmAI | GTCTC | 3 cut(s) | 779, 953, 1194 |
| BsmFI | GGGAC | 2 cut(s) | 578, 736 |
| BsmI | GAATGC | 2 cut(s) | 92, 310 |
| BsnI | GGCC | 2 cut(s) | 250, 670 |
| Bsp119I | TTCGAA | 1 cut(s) | 771 |
| Bsp1286I | GDGCHC | 4 cut(s) | 367, 861, 1047, 1060 |
| Bsp143I | GATC | 5 cut(s) | 109, 376, 487, 1070, 1152 |
| Bsp19I | CCATGG | 1 cut(s) | 74 |
| BspACI | CCGC | 1 cut(s) | 380 |
| BspANI | GGCC | 2 cut(s) | 250, 670 |
| BspCNI | CTCAG | 2 cut(s) | 768, 982 |
| BspDI | ATCGAT | 2 cut(s) | 112, 1155 |
| BspFNI | CGCG | 1 cut(s) | 1087 |
| BspHI | TCATGA | 1 cut(s) | 499 |
| BspLI | GGNNCC | 1 cut(s) | 49 |
| BspMI | ACCTGC | 1 cut(s) | 502 |
| BspPI | GGATC | 2 cut(s) | 371, 482 |
| BspT104I | TTCGAA | 1 cut(s) | 771 |
| BspT107I | GGYRCC | 1 cut(s) | 47 |
| BsrI | ACTGG | 5 cut(s) | 49, 252, 506, 566, 846 |
| BssECI | CCNNGG | 4 cut(s) | 74, 329, 744, 1226 |
| BssMI | GATC | 5 cut(s) | 109, 376, 487, 1070, 1152 |
| BssT1I | CCWWGG | 2 cut(s) | 74, 329 |
| Bst2UI | CCWGG | 3 cut(s) | 390, 633, 1175 |
| Bst4CI | ACNGT | 5 cut(s) | 61, 537, 701, 946, 1166 |
| Bst6I | CTCTTC | 2 cut(s) | 191, 353 |
| BstBAI | YACGTR | 1 cut(s) | 708 |
| BstBI | TTCGAA | 1 cut(s) | 771 |
| BstC8I | GCNNGC | 2 cut(s) | 22, 308 |
| BstDEI | CTNAG | 3 cut(s) | 354, 776, 990 |
| BstDSI | CCRYGG | 2 cut(s) | 74, 1226 |
| BstEII | GGTNACC | 1 cut(s) | 1177 |
| BstF5I | GGATG | 4 cut(s) | 540, 1175, 1195, 1212 |
| BstFNI | CGCG | 1 cut(s) | 1087 |
| BstH2I | RGCGCY | 1 cut(s) | 27 |
| BstHHI | GCGC | 2 cut(s) | 26, 1089 |
| BstKTI | GATC | 5 cut(s) | 112, 379, 490, 1073, 1155 |
| BstMAI | GTCTC | 3 cut(s) | 779, 953, 1194 |
| BstMBI | GATC | 5 cut(s) | 109, 376, 487, 1070, 1152 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 32, 529 |
| BstNI | CCWGG | 3 cut(s) | 390, 633, 1175 |
| BstNSI | RCATGY | 2 cut(s) | 306, 724 |
| BstPI | GGTNACC | 1 cut(s) | 1177 |
| BstSCI | CCNGG | 3 cut(s) | 388, 631, 1173 |
| BstSLI | GKGCMC | 1 cut(s) | 367 |
| BstUI | CGCG | 1 cut(s) | 1087 |
| BstV1I | GCAGC | 1 cut(s) | 76 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 632 |
| Bsu15I | ATCGAT | 2 cut(s) | 112, 1155 |
| BsuI | GTATCC | 1 cut(s) | 280 |
| BsuRI | GGCC | 2 cut(s) | 250, 670 |
| BsuTUI | ATCGAT | 2 cut(s) | 112, 1155 |
| BtgI | CCRYGG | 2 cut(s) | 74, 1226 |
| BtsCI | GGATG | 4 cut(s) | 540, 1175, 1195, 1212 |
| BtsIMutI | CAGTG | 2 cut(s) | 706, 1171 |
| BveI | ACCTGC | 1 cut(s) | 502 |
| Cac8I | GCNNGC | 2 cut(s) | 22, 308 |
| CciI | TCATGA | 1 cut(s) | 499 |
| CfoI | GCGC | 2 cut(s) | 26, 1089 |
| Cfr13I | GGNCC | 1 cut(s) | 249 |
| ClaI | ATCGAT | 2 cut(s) | 112, 1155 |
| CsiI | ACCWGGT | 1 cut(s) | 388 |
| Csp6I | GTAC | 5 cut(s) | 48, 64, 210, 816, 1099 |
| CviQI | GTAC | 5 cut(s) | 48, 64, 210, 816, 1099 |
| DdeI | CTNAG | 3 cut(s) | 354, 776, 990 |
| DpnI | GATC | 5 cut(s) | 111, 378, 489, 1072, 1154 |
| DpnII | GATC | 5 cut(s) | 109, 376, 487, 1070, 1152 |
| DraIII | CACNNNGTG | 1 cut(s) | 392 |
| EaeI | YGGCCR | 1 cut(s) | 668 |
| Eam1104I | CTCTTC | 2 cut(s) | 191, 353 |
| EarI | CTCTTC | 2 cut(s) | 191, 353 |
| EciI | GGCGGA | 1 cut(s) | 369 |
| Ecl136II | GAGCTC | 2 cut(s) | 859, 1058 |
| Eco130I | CCWWGG | 2 cut(s) | 74, 329 |
| Eco24I | GRGCYC | 2 cut(s) | 861, 1060 |
| Eco32I | GATATC | 1 cut(s) | 223 |
| Eco47III | AGCGCT | 1 cut(s) | 25 |
| Eco53kI | GAGCTC | 2 cut(s) | 859, 1058 |
| Eco57I | CTGAAG | 1 cut(s) | 293 |
| Eco91I | GGTNACC | 1 cut(s) | 1177 |
| EcoICRI | GAGCTC | 2 cut(s) | 859, 1058 |
| EcoO65I | GGTNACC | 1 cut(s) | 1177 |
| EcoRII | CCWGG | 3 cut(s) | 388, 631, 1173 |
| EcoRV | GATATC | 1 cut(s) | 223 |
| EcoT14I | CCWWGG | 2 cut(s) | 74, 329 |
| EcoT38I | GRGCYC | 2 cut(s) | 861, 1060 |
| ErhI | CCWWGG | 2 cut(s) | 74, 329 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 449, 481 |
| FaqI | GGGAC | 2 cut(s) | 578, 736 |
| Fnu4HI | GCNGC | 1 cut(s) | 90 |
| FokI | GGATG | 4 cut(s) | 527, 1182, 1202, 1219 |
| FriOI | GRGCYC | 2 cut(s) | 861, 1060 |
| Fsp4HI | GCNGC | 1 cut(s) | 90 |
| FspBI | CTAG | 3 cut(s) | 399, 483, 1242 |
| GlaI | GCGC | 2 cut(s) | 25, 1088 |
| GluI | GCNGC | 1 cut(s) | 90 |
| HaeII | RGCGCY | 1 cut(s) | 27 |
| HaeIII | GGCC | 2 cut(s) | 250, 670 |
| HhaI | GCGC | 2 cut(s) | 26, 1089 |
| Hin6I | GCGC | 2 cut(s) | 24, 1087 |
| HinP1I | GCGC | 2 cut(s) | 24, 1087 |
| HinfI | GANTC | 6 cut(s) | 82, 156, 437, 690, 787, 831 |
| HphI | GGTGA | 4 cut(s) | 188, 378, 842, 858 |
| Hpy166II | GTNNAC | 3 cut(s) | 57, 64, 441 |
| Hpy188I | TCNGA | 9 cut(s) | 161, 172, 259, 273, 298, 316, 940, 958, 991 |
| Hpy188III | TCNNGA | 3 cut(s) | 476, 500, 557 |
| Hpy8I | GTNNAC | 3 cut(s) | 57, 64, 441 |
| HpyAV | CCTTC | 7 cut(s) | 167, 200, 268, 454, 778, 873, 1190 |
| HpyCH4III | ACNGT | 5 cut(s) | 61, 537, 701, 946, 1166 |
| HpyCH4IV | ACGT | 2 cut(s) | 600, 707 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 92, 188, 310, 1002, 1035 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 32, 529 |
| HpyF3I | CTNAG | 3 cut(s) | 354, 776, 990 |
| HpySE526I | ACGT | 2 cut(s) | 600, 707 |
| HspAI | GCGC | 2 cut(s) | 24, 1087 |
| KpnI | GGTACC | 1 cut(s) | 51 |
| Kzo9I | GATC | 5 cut(s) | 109, 376, 487, 1070, 1152 |
| LmnI | GCTCC | 6 cut(s) | 652, 746, 864, 1019, 1055, 1063 |
| Lsp1109I | GCAGC | 1 cut(s) | 76 |
| LweI | GCATC | 1 cut(s) | 1160 |
| MabI | ACCWGGT | 1 cut(s) | 388 |
| MaeI | CTAG | 3 cut(s) | 399, 483, 1242 |
| MaeII | ACGT | 2 cut(s) | 600, 707 |
| MaeIII | GTNAC | 5 cut(s) | 508, 841, 848, 1177, 1255 |
| MalI | GATC | 5 cut(s) | 111, 378, 489, 1072, 1154 |
| MboI | GATC | 5 cut(s) | 109, 376, 487, 1070, 1152 |
| MboII | GAAGA | 6 cut(s) | 191, 205, 208, 239, 370, 1080 |
| MfeI | CAATTG | 1 cut(s) | 1074 |
| MhlI | GDGCHC | 4 cut(s) | 367, 861, 1047, 1060 |
| MlsI | TGGCCA | 1 cut(s) | 670 |
| MluCI | AATT | 4 cut(s) | 99, 758, 880, 1074 |
| MluNI | TGGCCA | 1 cut(s) | 670 |
| MlyI | GAGTC | 5 cut(s) | 91, 446, 699, 781, 840 |
| MmeI | TCCRAC | 3 cut(s) | 183, 373, 1045 |
| MnlI | CCTC | 9 cut(s) | 192, 258, 354, 354, 456, 754, 771, 924, 1091 |
| Mox20I | TGGCCA | 1 cut(s) | 670 |
| MroXI | GAANNNNTTC | 1 cut(s) | 166 |
| MscI | TGGCCA | 1 cut(s) | 670 |
| MseI | TTAA | 2 cut(s) | 1235, 1261 |
| MslI | CAYNNNNRTG | 3 cut(s) | 149, 930, 1040 |
| Msp20I | TGGCCA | 1 cut(s) | 670 |
| MspA1I | CMGCKG | 1 cut(s) | 952 |
| MspR9I | CCNGG | 3 cut(s) | 390, 633, 1175 |
| MunI | CAATTG | 1 cut(s) | 1074 |
| Mva1269I | GAATGC | 2 cut(s) | 92, 310 |
| MvaI | CCWGG | 3 cut(s) | 390, 633, 1175 |
| MvnI | CGCG | 1 cut(s) | 1087 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 32, 529 |
| NcoI | CCATGG | 1 cut(s) | 74 |
| NdeII | GATC | 5 cut(s) | 109, 376, 487, 1070, 1152 |
| NlaIV | GGNNCC | 1 cut(s) | 49 |
| NmuCI | GTSAC | 2 cut(s) | 848, 1255 |
| NspI | RCATGY | 2 cut(s) | 306, 724 |
| NspV | TTCGAA | 1 cut(s) | 771 |
| PagI | TCATGA | 1 cut(s) | 499 |
| PaqCI | CACCTGC | 1 cut(s) | 502 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 231 |
| PctI | GAATGC | 2 cut(s) | 92, 310 |
| PdmI | GAANNNNTTC | 1 cut(s) | 166 |
| PfeI | GAWTC | 1 cut(s) | 156 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 389, 680 |
| PkrI | GCNGC | 1 cut(s) | 91 |
| PleI | GAGTC | 5 cut(s) | 90, 445, 698, 781, 839 |
| PpsI | GAGTC | 5 cut(s) | 90, 445, 698, 781, 839 |
| Ppu21I | YACGTR | 1 cut(s) | 708 |
| Psp124BI | GAGCTC | 2 cut(s) | 861, 1060 |
| Psp1406I | AACGTT | 1 cut(s) | 600 |
| Psp6I | CCWGG | 3 cut(s) | 388, 631, 1173 |
| PspEI | GGTNACC | 1 cut(s) | 1177 |
| PspGI | CCWGG | 3 cut(s) | 388, 631, 1173 |
| PspN4I | GGNNCC | 1 cut(s) | 49 |
| PspPI | GGNCC | 1 cut(s) | 249 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 889, 921 |
| PvuII | CAGCTG | 1 cut(s) | 952 |
| RsaI | GTAC | 5 cut(s) | 49, 65, 211, 817, 1100 |
| RsaNI | GTAC | 5 cut(s) | 48, 64, 210, 816, 1099 |
| RseI | CAYNNNNRTG | 3 cut(s) | 149, 930, 1040 |
| SacI | GAGCTC | 2 cut(s) | 861, 1060 |
| SaqAI | TTAA | 2 cut(s) | 1235, 1261 |
| SatI | GCNGC | 1 cut(s) | 90 |
| Sau3AI | GATC | 5 cut(s) | 109, 376, 487, 1070, 1152 |
| Sau96I | GGNCC | 1 cut(s) | 249 |
| SchI | GAGTC | 5 cut(s) | 91, 446, 699, 781, 840 |
| ScrFI | CCNGG | 3 cut(s) | 390, 633, 1175 |
| SduI | GDGCHC | 4 cut(s) | 367, 861, 1047, 1060 |
| SexAI | ACCWGGT | 1 cut(s) | 388 |
| SfaNI | GCATC | 1 cut(s) | 1160 |
| SfuI | TTCGAA | 1 cut(s) | 771 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 149, 930, 1040 |
| SpeI | ACTAGT | 1 cut(s) | 482 |
| Sse9I | AATT | 4 cut(s) | 99, 758, 880, 1074 |
| SsiI | CCGC | 1 cut(s) | 380 |
| SspMI | CTAG | 3 cut(s) | 399, 483, 1242 |
| SstI | GAGCTC | 2 cut(s) | 861, 1060 |
| StyD4I | CCNGG | 3 cut(s) | 388, 631, 1173 |
| StyI | CCWWGG | 2 cut(s) | 74, 329 |
| TaaI | ACNGT | 5 cut(s) | 61, 537, 701, 946, 1166 |
| TaiI | ACGT | 2 cut(s) | 603, 710 |
| TaqI | TCGA | 6 cut(s) | 112, 225, 771, 804, 1134, 1155 |
| TasI | AATT | 4 cut(s) | 99, 758, 880, 1074 |
| TatI | WGTACW | 2 cut(s) | 63, 815 |
| TfiI | GAWTC | 1 cut(s) | 156 |
| Tru1I | TTAA | 2 cut(s) | 1235, 1261 |
| Tru9I | TTAA | 2 cut(s) | 1235, 1261 |
| TscAI | CASTG | 2 cut(s) | 706, 1171 |
| TseFI | GTSAC | 2 cut(s) | 848, 1255 |
| TseI | GCWGC | 1 cut(s) | 89 |
| Tsp45I | GTSAC | 2 cut(s) | 848, 1255 |
| TspDTI | ATGAA | 7 cut(s) | 85, 134, 408, 516, 529, 623, 1209 |
| TspGWI | ACGGA | 1 cut(s) | 1006 |
| TspRI | CASTG | 2 cut(s) | 706, 1171 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 389, 680 |
| XceI | RCATGY | 2 cut(s) | 306, 724 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 558 |
| XmnI | GAANNNNTTC | 1 cut(s) | 166 |
| XspI | CTAG | 3 cut(s) | 399, 483, 1242 |