Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001689

Physical Location & Seq

Genomic Coordinates Reverse (-)

21567808 .. 21571405

Gene Structure 3598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g30670.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGATGGTGACAAAAAGTAGGCGTTCAGCCCTATTAATGTTAGTGGAGGAGAGGTTATTGAAGAACAAAACAGAGGAAGAGGAAAAGCAAGCGCAGTTGTCATATATCCATAAGGACTGTATCTCGAACATCCTTGCACGGCTTCCTGCTGATTCTCTTCATAGGTCGAGGTTTGTTTGCAAACCATGGTATAATGTAGTTCAAAACCCCAAATTCATTGATGCTCATCTCCAACGTTCTGAATCTGTTTTGATCTTTTTAAAACCAAATGTAAAGGAAAGTTTGCACCCTATATCTAAGAAGCTAAAATTGGGAGAAAATGAAAGCTCATACCCTTATCCTATGACATCTACCCTACAGGAGAACCGAAACACAGTTCCAGTTGAATCAAAACTTCTTGACCCAAACAATGTCCCTATGTTTGGTCACCCAGCCTTAACTTCTCCAAAAAGCTCTGTTCAGTTTATGGAATTTAAAAATGGTGGGAGTGACATAGTAGAATACAGTTTAAGCTGCTTAGGCAATAATATTAGAGCCACCTGCAATGGTCTAATATTGCTTGACAACAAATTGAAGAAGGGAGGGGTTATAGTCTTGAATCCTGTGACTAAGAAGGTGACTGATCTTCCTGTGGGTACCTTGTGTCATCAAGAATCATATGGTTTTGCAATGAGTCATGTAACTGCTGAGTATAAAGTAGTCCACTTGTTTCTGGATCGGTTGGGGTTCGCTGGATGTGAGATATTGAGCCTTCATAAAAAAGCATGGAGAGGGGTCAATGGTCCTTCTTTCGGGCTCTTTAGTAATCATCGGTTTGGATATGCACCTGTTTCAGCAATCGGAGCTTTGCACTGGATGCCTCATTTGAAAGGAAGCAATTACATAGTGTCCATGGAAGTTGATAAGGAGACGTTTCACCAAATACCTCTCCCTAAGAGTTGCGGATTTCATGATAGGATTATTGAAATTGGTGGCTCTTTAGGTCTTGTCACTCACGAGGACATCAACCACATTGACATTTGGATCTTGAAGGATTTATTTGGGGAAGGGTGGACAAAGCAACACAGTATCACAGTGGATACCAAAACAGACATGGTTCCCCTTTGCAGTTTAAGAATTAAGGGAGATATTATTTTCTGTAGAATGAAAGGCAACTCCTTGTATGCTTTTGACTTCCAACAGCAACAGATGACAGAGATTGGGAAGGTTAATTCTTCTGTCAAATACCTGCCTCATGTCAATAGCCTTGTTACTTGGGTGCAAGCAAGTGAGGACATCTTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

429

Amino Acids

48.27

Weight (kDa)

8.58

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	39 - 72	9.7e-07	F-box domain
FBA_3	PF08268	169 - 388	8.1e-19	F-box associated beta propeller domain
FBA_1	PF07734	180 - 396	6.6e-10	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30670 FvH4_5g30670 FvH4_5g30670 FvH4_5g31300
malus_domestica	MD15G1404600.v1.1
prunus_persica	Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1
pyrus_communis	pycom15g36200
rosa_chinensis	RchiOBHm_Chr7g0218801 RchiOBHm_Chr7g0225531 RchiOBHm_Chr7g0226391 RchiOBHm_Chr7g0231221
rosa_laevigata	RLG00000001428 RLG00000001721 RLG00000001808 RLG00000002341
rosa_multiflora	Rmu_sc0003876.1_g000039 Rmu_sc0004426.1_g000001 Rmu_sc0004571.1_g000021 Rmu_sc0012403.1_g000002 Rmu_sc0025113.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229430 Rroxscaffold_3G00233700
rosa_rugosa	Rorug07G0230700 Rorug07G0237000 Rorug07G0265200
rosa_samantha	Rh7AG321300 Rh7AG322200 Rh7AG372900 Rh7AG385100 Rh7AG418400 Rh7BG365200 Rh7BG371000 Rh7BG394100 Rh7CG337800 Rh7CG391100 Rh7CG404500 Rh7CG438200 Rh7DG376000 Rh7DG384200 Rh7DG412400
rosa_wichuraiana	Rw7G031740 Rw7G032190 Rw7G032350 Rw7G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	548
Acc36I	ACCTGC	2 cut(s)	548, 1236
Acc65I	GGTACC	1 cut(s)	635
AccB1I	GGYRCC	1 cut(s)	635
AciI	CCGC	1 cut(s)	942
AclI	AACGTT	1 cut(s)	235
AclWI	GGATC	2 cut(s)	723, 1031
AcsI	RAATTY	2 cut(s)	212, 470
AfaI	GTAC	1 cut(s)	637
AfiI	CCNNNNNNNGG	2 cut(s)	422, 791
AgsI	TTSAA	8 cut(s)	61, 203, 386, 574, 598, 868, 965, 1030
AjuI	GAANNNNNNNTTGG	2 cut(s)	293, 325
AluBI	AGCT	5 cut(s)	304, 327, 453, 513, 845
AluI	AGCT	5 cut(s)	304, 327, 453, 513, 845
Alw26I	GTCTC	1 cut(s)	902
AlwI	GGATC	2 cut(s)	723, 1031
ApeKI	GCWGC	1 cut(s)	513
ApoI	RAATTY	2 cut(s)	212, 470
AseI	ATTAAT	1 cut(s)	35
Asp718I	GGTACC	1 cut(s)	635
AspLEI	GCGC	1 cut(s)	94
AspS9I	GGNCC	1 cut(s)	782
AsuHPI	GGTGA	4 cut(s)	19, 419, 628, 908
AvaII	GGWCC	1 cut(s)	782
BanI	GGYRCC	1 cut(s)	635
BanII	GRGCYC	1 cut(s)	798
BauI	CACGAG	1 cut(s)	995
BbvI	GCAGC	1 cut(s)	500
BceAI	ACGGC	1 cut(s)	155
BciVI	GTATCC	1 cut(s)	1072
BcoDI	GTCTC	1 cut(s)	902
BfmI	CTRYAG	2 cut(s)	356, 1138
BfuAI	ACCTGC	2 cut(s)	548, 1236
BfuI	GTATCC	1 cut(s)	1072
BisI	GCNGC	1 cut(s)	514
BlsI	GCNGC	1 cut(s)	515
Bme18I	GGWCC	1 cut(s)	782
BmgT120I	GGNCC	1 cut(s)	782
BmiI	GGNNCC	2 cut(s)	637, 1098
BmsI	GCATC	2 cut(s)	211, 846
Bpu10I	CCTNAGC	1 cut(s)	517
BsaBI	GATNNNNATC	1 cut(s)	225
BsaJI	CCNNGG	2 cut(s)	185, 891
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	2 cut(s)	422, 791
Bse1I	ACTGG	2 cut(s)	380, 857
Bse3DI	GCAATG	2 cut(s)	550, 675
Bse8I	GATNNNNATC	1 cut(s)	225
BseDI	CCNNGG	2 cut(s)	185, 891
BseGI	GGATG	3 cut(s)	129, 740, 861
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	2 cut(s)	422, 791
BseMI	GCAATG	2 cut(s)	550, 675
BseMII	CTCAG	1 cut(s)	678
BseNI	ACTGG	2 cut(s)	380, 857
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	500
BseYI	CCCAGC	1 cut(s)	430
BshNI	GGYRCC	1 cut(s)	635
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	2 cut(s)	422, 791
BsmAI	GTCTC	1 cut(s)	902
BsmBI	CGTCTC	1 cut(s)	902
BsmFI	GGGAC	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	798
Bsp143I	GATC	4 cut(s)	252, 622, 715, 1023
Bsp19I	CCATGG	2 cut(s)	185, 891
BspACI	CCGC	1 cut(s)	942
BspCNI	CTCAG	1 cut(s)	679
BspHI	TCATGA	1 cut(s)	949
BspLI	GGNNCC	2 cut(s)	637, 1098
BspMI	ACCTGC	2 cut(s)	548, 1236
BspPI	GGATC	2 cut(s)	723, 1031
BspT107I	GGYRCC	1 cut(s)	635
BsrDI	GCAATG	2 cut(s)	550, 675
BsrI	ACTGG	2 cut(s)	380, 857
BssECI	CCNNGG	2 cut(s)	185, 891
BssMI	GATC	4 cut(s)	252, 622, 715, 1023
BssSI	CACGAG	1 cut(s)	995
BssT1I	CCWWGG	2 cut(s)	185, 891
Bst2BI	CACGAG	1 cut(s)	995
Bst4CI	ACNGT	5 cut(s)	119, 376, 506, 1067, 1075
Bst6I	CTCTTC	2 cut(s)	72, 162
BstAPI	GCANNNNNTGC	1 cut(s)	856
BstC8I	GCNNGC	2 cut(s)	90, 1263
BstDEI	CTNAG	5 cut(s)	297, 517, 609, 687, 933
BstDSI	CCRYGG	2 cut(s)	185, 891
BstEII	GGTNACC	1 cut(s)	425
BstF5I	GGATG	3 cut(s)	129, 740, 861
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	4 cut(s)	255, 625, 718, 1026
BstMAI	GTCTC	1 cut(s)	902
BstMBI	GATC	4 cut(s)	252, 622, 715, 1023
BstMWI	GCNNNNNNNGC	3 cut(s)	519, 842, 856
BstPI	GGTNACC	1 cut(s)	425
BstSFI	CTRYAG	2 cut(s)	356, 1138
BstV1I	GCAGC	1 cut(s)	500
BstX2I	RGATCY	1 cut(s)	1023
BstYI	RGATCY	1 cut(s)	1023
BsuI	GTATCC	1 cut(s)	1072
BtgI	CCRYGG	2 cut(s)	185, 891
BtsCI	GGATG	3 cut(s)	129, 740, 861
BtsIMutI	CAGTG	2 cut(s)	850, 1080
BveI	ACCTGC	2 cut(s)	548, 1236
Cac8I	GCNNGC	2 cut(s)	90, 1263
CciI	TCATGA	1 cut(s)	949
CfoI	GCGC	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	782
Csp6I	GTAC	1 cut(s)	636
CviAII	CATG	7 cut(s)	186, 677, 765, 892, 950, 1093, 1235
CviQI	GTAC	1 cut(s)	636
DdeI	CTNAG	5 cut(s)	297, 517, 609, 687, 933
DpnI	GATC	4 cut(s)	254, 624, 717, 1025
DpnII	GATC	4 cut(s)	252, 622, 715, 1023
DraI	TTTAAA	2 cut(s)	261, 475
Eam1104I	CTCTTC	2 cut(s)	72, 162
EarI	CTCTTC	2 cut(s)	72, 162
Eco130I	CCWWGG	2 cut(s)	185, 891
Eco24I	GRGCYC	1 cut(s)	798
Eco47I	GGWCC	1 cut(s)	782
Eco91I	GGTNACC	1 cut(s)	425
EcoO65I	GGTNACC	1 cut(s)	425
EcoT14I	CCWWGG	2 cut(s)	185, 891
EcoT38I	GRGCYC	1 cut(s)	798
ErhI	CCWWGG	2 cut(s)	185, 891
Esp3I	CGTCTC	1 cut(s)	902
FaeI	CATG	7 cut(s)	189, 680, 768, 895, 953, 1096, 1238
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	7 cut(s)	185, 676, 764, 891, 949, 1092, 1234
FauNDI	CATATG	1 cut(s)	658
Fnu4HI	GCNGC	1 cut(s)	514
FokI	GGATG	3 cut(s)	116, 747, 868
FriOI	GRGCYC	1 cut(s)	798
Fsp4HI	GCNGC	1 cut(s)	514
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	1 cut(s)	514
GsaI	CCCAGC	1 cut(s)	434
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	7 cut(s)	189, 680, 768, 895, 953, 1096, 1238
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HinfI	GANTC	6 cut(s)	152, 242, 386, 598, 653, 673
HphI	GGTGA	4 cut(s)	19, 419, 628, 908
Hpy166II	GTNNAC	2 cut(s)	703, 1053
Hpy188I	TCNGA	2 cut(s)	241, 842
Hpy188III	TCNNGA	8 cut(s)	124, 398, 595, 650, 713, 950, 995, 1027
Hpy8I	GTNNAC	2 cut(s)	703, 1053
HpyAV	CCTTC	7 cut(s)	571, 607, 761, 795, 1024, 1040, 1198
HpyCH4III	ACNGT	5 cut(s)	119, 376, 506, 1067, 1075
HpyCH4IV	ACGT	2 cut(s)	235, 911
HpyCH4V	TGCA	9 cut(s)	137, 180, 286, 543, 668, 824, 850, 1107, 1261
HpyF10VI	GCNNNNNNNGC	3 cut(s)	519, 842, 856
HpyF3I	CTNAG	5 cut(s)	297, 517, 609, 687, 933
HpySE526I	ACGT	2 cut(s)	235, 911
Hsp92II	CATG	7 cut(s)	189, 680, 768, 895, 953, 1096, 1238
HspAI	GCGC	1 cut(s)	92
KpnI	GGTACC	1 cut(s)	639
Kzo9I	GATC	4 cut(s)	252, 622, 715, 1023
LmnI	GCTCC	1 cut(s)	842
Lsp1109I	GCAGC	1 cut(s)	500
LweI	GCATC	2 cut(s)	211, 846
MaeII	ACGT	2 cut(s)	235, 911
MaeIII	GTNAC	8 cut(s)	7, 425, 488, 604, 616, 679, 988, 1249
MalI	GATC	4 cut(s)	254, 624, 717, 1025
MboI	GATC	4 cut(s)	252, 622, 715, 1023
MboII	GAAGA	6 cut(s)	73, 89, 149, 586, 617, 1206
MflI	RGATCY	1 cut(s)	1023
MhlI	GDGCHC	1 cut(s)	798
MluCI	AATT	8 cut(s)	212, 308, 470, 569, 877, 966, 1116, 1210
MlyI	GAGTC	1 cut(s)	682
MmeI	TCCRAC	2 cut(s)	256, 1201
MseI	TTAA	8 cut(s)	35, 260, 437, 474, 509, 1112, 1119, 1209
MwoI	GCNNNNNNNGC	3 cut(s)	519, 842, 856
NcoI	CCATGG	2 cut(s)	185, 891
NdeI	CATATG	1 cut(s)	658
NdeII	GATC	4 cut(s)	252, 622, 715, 1023
NlaIII	CATG	7 cut(s)	189, 680, 768, 895, 953, 1096, 1238
NlaIV	GGNNCC	2 cut(s)	637, 1098
NmuCI	GTSAC	6 cut(s)	7, 425, 488, 604, 616, 988
PagI	TCATGA	1 cut(s)	949
PaqCI	CACCTGC	1 cut(s)	548
PfeI	GAWTC	5 cut(s)	152, 242, 386, 598, 653
PkrI	GCNGC	1 cut(s)	515
PleI	GAGTC	1 cut(s)	681
PpsI	GAGTC	1 cut(s)	681
PshBI	ATTAAT	1 cut(s)	35
Psp1406I	AACGTT	1 cut(s)	235
PspEI	GGTNACC	1 cut(s)	425
PspFI	CCCAGC	1 cut(s)	430
PspN4I	GGNNCC	2 cut(s)	637, 1098
PspPI	GGNCC	1 cut(s)	782
PsuI	RGATCY	1 cut(s)	1023
RsaI	GTAC	1 cut(s)	637
RsaNI	GTAC	1 cut(s)	636
SaqAI	TTAA	8 cut(s)	35, 260, 437, 474, 509, 1112, 1119, 1209
SatI	GCNGC	1 cut(s)	514
Sau3AI	GATC	4 cut(s)	252, 622, 715, 1023
Sau96I	GGNCC	1 cut(s)	782
SchI	GAGTC	1 cut(s)	682
SduI	GDGCHC	1 cut(s)	798
SfaNI	GCATC	2 cut(s)	211, 846
SfcI	CTRYAG	2 cut(s)	356, 1138
SinI	GGWCC	1 cut(s)	782
Sse9I	AATT	8 cut(s)	212, 308, 470, 569, 877, 966, 1116, 1210
SsiI	CCGC	1 cut(s)	942
SspI	AATATT	2 cut(s)	529, 555
StyI	CCWWGG	2 cut(s)	185, 891
TaaI	ACNGT	5 cut(s)	119, 376, 506, 1067, 1075
TaiI	ACGT	2 cut(s)	238, 914
TaqI	TCGA	2 cut(s)	125, 167
TasI	AATT	8 cut(s)	212, 308, 470, 569, 877, 966, 1116, 1210
TfiI	GAWTC	5 cut(s)	152, 242, 386, 598, 653
Tru1I	TTAA	8 cut(s)	35, 260, 437, 474, 509, 1112, 1119, 1209
Tru9I	TTAA	8 cut(s)	35, 260, 437, 474, 509, 1112, 1119, 1209
TscAI	CASTG	2 cut(s)	857, 1080
TseFI	GTSAC	6 cut(s)	7, 425, 488, 604, 616, 988
TseI	GCWGC	1 cut(s)	513
Tsp45I	GTSAC	6 cut(s)	7, 425, 488, 604, 616, 988
TspDTI	ATGAA	6 cut(s)	149, 205, 336, 743, 938, 1160
TspRI	CASTG	2 cut(s)	857, 1080
VpaK11BI	GGWCC	1 cut(s)	782
VspI	ATTAAT	1 cut(s)	35
XapI	RAATTY	2 cut(s)	212, 470
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1090

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.