Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001689

Physical Location & Seq

Genomic Coordinates Forward (+)

21741973 .. 21742522

Gene Structure 550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0237000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTATCTCTTGCTCATTGCTTTGGCTACCAAGGTGGTGCAAGGCCAAAACACCCGTGTCGGATTCTATTCAAGTTCATGCCCTAAAGCAGAGTCCATTGTCAAGCAAACAGTTCAAGCTCATTTCAGTTCTGATCCTTCCATTGCTCCTGGCTTGTTAAGGATGCACTTTCATGATTGCTTTGTCCAAGGTTGCGATGCTTCAGTCCTGATCTTGACGTTATTGACGAATGACGATGAAAAGAAGAAACTTGAAGCCGCATGCCCTGGAGTTGTTTCCTGTGCTGACATTATCGCCCTTGCTGCTCGCGATTCTGTGGTCTTGACGAAGGGAATTGATTGGAAGCAGGTTCCCACCGGGAGATTAGATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

124

Amino Acids

13.32

Weight (kDa)

6.8

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	34 - 124	4.2e-29	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30670 FvH4_5g30670 FvH4_5g30670 FvH4_5g31300
malus_domestica	MD15G1404600.v1.1
prunus_persica	Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1
pyrus_communis	pycom15g36200
rosa_chinensis	RchiOBHm_Chr7g0218801 RchiOBHm_Chr7g0225531 RchiOBHm_Chr7g0226391 RchiOBHm_Chr7g0231221
rosa_laevigata	RLG00000001428 RLG00000001721 RLG00000001808 RLG00000002341
rosa_multiflora	Rmu_sc0003876.1_g000039 Rmu_sc0004426.1_g000001 Rmu_sc0004571.1_g000021 Rmu_sc0012403.1_g000002 Rmu_sc0025113.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229430 Rroxscaffold_3G00233700
rosa_rugosa	Rorug07G0230700 Rorug07G0237000 Rorug07G0265200
rosa_samantha	Rh7AG321300 Rh7AG322200 Rh7AG372900 Rh7AG385100 Rh7AG418400 Rh7BG365200 Rh7BG371000 Rh7BG394100 Rh7CG337800 Rh7CG391100 Rh7CG404500 Rh7CG438200 Rh7DG376000 Rh7DG384200 Rh7DG412400
rosa_wichuraiana	Rw7G031740 Rw7G032190 Rw7G032350 Rw7G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	337
AccII	CGCG	1 cut(s)	309
AciI	CCGC	1 cut(s)	258
AclWI	GGATC	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	186
AgsI	TTSAA	3 cut(s)	72, 116, 254
AjnI	CCWGG	2 cut(s)	148, 265
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
AlwI	GGATC	1 cut(s)	128
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	302
AsuC2I	CCSGG	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	1 cut(s)	362
BciT130I	CCWGG	2 cut(s)	150, 267
BcnI	CCSGG	1 cut(s)	358
BfuAI	ACCTGC	1 cut(s)	337
BisI	GCNGC	2 cut(s)	258, 303
BlsI	GCNGC	2 cut(s)	259, 304
Bme1390I	CCNGG	3 cut(s)	150, 267, 358
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	3 cut(s)	150, 267, 358
BmsI	GCATC	2 cut(s)	153, 187
BpmI	CTGGAG	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	358
BsaJI	CCNNGG	3 cut(s)	30, 187, 265
Bse3DI	GCAATG	2 cut(s)	15, 141
BseBI	CCWGG	2 cut(s)	150, 267
BseDI	CCNNGG	3 cut(s)	30, 187, 265
BseGI	GGATG	1 cut(s)	168
BseMI	GCAATG	2 cut(s)	15, 141
BseXI	GCAGC	1 cut(s)	289
Bsh1236I	CGCG	1 cut(s)	309
BshFI	GGCC	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	357
BsnI	GGCC	1 cut(s)	45
Bsp143I	GATC	2 cut(s)	133, 210
Bsp68I	TCGCGA	1 cut(s)	309
BspACI	CCGC	1 cut(s)	258
BspANI	GGCC	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	309
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	351
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	1 cut(s)	128
BsrDI	GCAATG	2 cut(s)	15, 141
BssECI	CCNNGG	3 cut(s)	30, 187, 265
BssMI	GATC	2 cut(s)	133, 210
BssT1I	CCWWGG	2 cut(s)	30, 187
Bst2UI	CCWGG	2 cut(s)	150, 267
Bst4CI	ACNGT	1 cut(s)	112
BstC8I	GCNNGC	2 cut(s)	262, 307
BstF5I	GGATG	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	309
BstKTI	GATC	2 cut(s)	136, 213
BstMBI	GATC	2 cut(s)	133, 210
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNI	CCWGG	2 cut(s)	150, 267
BstNSI	RCATGY	1 cut(s)	264
BstSCI	CCNGG	3 cut(s)	148, 265, 356
BstUI	CGCG	1 cut(s)	309
BstV1I	GCAGC	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	45
BtgZI	GCGATG	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	168
BtuMI	TCGCGA	1 cut(s)	309
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	2 cut(s)	262, 307
CciI	TCATGA	1 cut(s)	172
CviAII	CATG	3 cut(s)	78, 173, 261
CviJI	RGCY	5 cut(s)	26, 45, 119, 153, 257
CviKI_1	RGCY	5 cut(s)	26, 45, 119, 153, 257
DpnI	GATC	2 cut(s)	135, 212
DpnII	GATC	2 cut(s)	133, 210
Eco130I	CCWWGG	2 cut(s)	30, 187
Eco57I	CTGAAG	1 cut(s)	186
EcoRII	CCWGG	2 cut(s)	148, 265
EcoT14I	CCWWGG	2 cut(s)	30, 187
ErhI	CCWWGG	2 cut(s)	30, 187
FaeI	CATG	3 cut(s)	81, 176, 264
FaiI	YATR	3 cut(s)	79, 174, 262
FatI	CATG	3 cut(s)	77, 172, 260
Fnu4HI	GCNGC	2 cut(s)	258, 303
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	2 cut(s)	258, 303
GluI	GCNGC	2 cut(s)	258, 303
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	1 cut(s)	357
Hin1II	CATG	3 cut(s)	81, 176, 264
HinfI	GANTC	3 cut(s)	63, 92, 311
HpaII	CCGG	1 cut(s)	357
Hpy188I	TCNGA	2 cut(s)	62, 133
Hpy188III	TCNNGA	5 cut(s)	173, 208, 214, 308, 322
HpyAV	CCTTC	2 cut(s)	147, 322
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	218
HpyCH4V	TGCA	2 cut(s)	40, 166
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpySE526I	ACGT	1 cut(s)	218
Hsp92II	CATG	3 cut(s)	81, 176, 264
Kzo9I	GATC	2 cut(s)	133, 210
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	8 cut(s)	135, 162, 221, 252, 279, 292, 332, 370
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	2 cut(s)	153, 187
MaeII	ACGT	1 cut(s)	218
MalI	GATC	2 cut(s)	135, 212
MboI	GATC	2 cut(s)	133, 210
MboII	GAAGA	1 cut(s)	256
MluCI	AATT	1 cut(s)	333
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	40
MseI	TTAA	1 cut(s)	158
MslI	CAYNNNNRTG	1 cut(s)	171
MspI	CCGG	1 cut(s)	357
MspR9I	CCNGG	3 cut(s)	150, 267, 358
MvaI	CCWGG	2 cut(s)	150, 267
MvnI	CGCG	1 cut(s)	309
MwoI	GCNNNNNNNGC	1 cut(s)	302
NciI	CCSGG	1 cut(s)	358
NdeII	GATC	2 cut(s)	133, 210
NlaIII	CATG	3 cut(s)	81, 176, 264
NlaIV	GGNNCC	1 cut(s)	351
NruI	TCGCGA	1 cut(s)	309
NspI	RCATGY	1 cut(s)	264
PaeI	GCATGC	1 cut(s)	264
PagI	TCATGA	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	224
PfeI	GAWTC	2 cut(s)	63, 311
PkrI	GCNGC	2 cut(s)	259, 304
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp6I	CCWGG	2 cut(s)	148, 265
PspGI	CCWGG	2 cut(s)	148, 265
PspN4I	GGNNCC	1 cut(s)	351
RruI	TCGCGA	1 cut(s)	309
RseI	CAYNNNNRTG	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	2 cut(s)	258, 303
Sau3AI	GATC	2 cut(s)	133, 210
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	3 cut(s)	150, 267, 358
SetI	ASST	5 cut(s)	36, 121, 193, 221, 351
SfaNI	GCATC	2 cut(s)	153, 187
SmiMI	CAYNNNNRTG	1 cut(s)	171
SphI	GCATGC	1 cut(s)	264
Sse9I	AATT	1 cut(s)	333
SsiI	CCGC	1 cut(s)	258
StyD4I	CCNGG	3 cut(s)	148, 265, 356
StyI	CCWWGG	2 cut(s)	30, 187
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	1 cut(s)	221
TasI	AATT	1 cut(s)	333
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	2 cut(s)	63, 311
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TseI	GCWGC	1 cut(s)	302
TspDTI	ATGAA	3 cut(s)	66, 161, 252
XceI	RCATGY	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.