Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001689

Physical Location & Seq

Genomic Coordinates Forward (+)

19950203 .. 19953478

Gene Structure 3276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00233700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGATGGTGACAAGAAGCAAGAGTTCAGGCCTATTAAAGTTAGTGGAGGAGAGGTTATTGAAGAAGAAAACAGAGGAAGAGAAAAAGCAAGCACAAATTTCATATATCCCCAAGGACTGTATCTCAAACATCCTTGCACGACTTCCTGCTGACTCTCTTCAAAGGTCGAGGTTTGTTTGCAAACCATGGTATAATGTAGTTAAAAACCCCAAATTCATTCATGCTCATCTCCAACGTTCTGAATCTGTTTTGATCTTTTTAGCACCAAATGTAAAGGAAAGTTTGCACCCTATTTCTAAGAAGATGAAAGTGGGAGAAAATGGAAGGTCATATCCTATGGCATCTAACCTACAGGAGAAGCAAAACAAAATTCCAGTTGAATCAAAACTTTTTGACCCAAACAGTATCCCCATTTTTGGTCACCCAGCCTTAAATTCTCCAAAAAATTTTATTCAGTTTCTGGAATTTAAAAATGGTAAGAGTGACATAGGAGAATACGGTTTAAGCTGCTTGGGCAATAATATTAGAGCCACCTGCAATGGTCTAATATTGCTTGACAACAAATTGAAGAAGGGAGGTGTTATAGTCTTGAATCCTGTGACTAAGAAGGTGATTGCACTTCCTGTGGGTACCTTGTGTCGTCTTCTACATCAAGAATCATATGGTTTTGCATTGAGTGATGTAACTGGTGAGTATAAAGTAGTCCACTTGTTTCTGGATCAGTTGGGGTTTGCTGGCTGTGAGATATTGAGCCTTAATAAGAAAGCATGGAGAGAGGTTAGTGGTCCTTCTTTTGGGCTCTTTGGTATGAATGGGTTTGGATGTGCACCTGTTTCAGCAGCCGGAGCTTTGCACTGGATTCTTCATTTTAATGGAAGCAATTACGTAGTGTCCATGGAAGTTGACAAGGAGAAGTTTCACCAAATACCGCTCCCTAAGAGTTGCAGAACTCATGATAGGATTATTGAAATTGGTGGCTCTTTAGGTTTTGTCGCTCATGAGGACGTGAACCACATTGACATTTGGATATTGAAGGGTTTATCTGGGGAAGGGTGGACAAAGCAGCACAGTATCACAGTGGATTCCAAAATAGACATGGTTCCACTTTGCAGTTTAAGAATCAAGGGAGATATTATTTTCCGTAGAAACAAAGACGGCTCTTTCTATGCTTATGACTTCCAACAGCAACAGATGACAGAGATTGGGAAGATTAATGGACTACCAAGGTGCCTGCCTCATGTCAATAGCCTTGTTACTTGGATGCAAGCGAGTGAGGACATGTTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

429

Amino Acids

48.08

Weight (kDa)

9.17

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	34 - 73	1.7e-08	F-box domain
FBA_3	PF08268	174 - 400	4.8e-18	F-box associated beta propeller domain
FBA_1	PF07734	178 - 388	4.9e-10	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30670 FvH4_5g30670 FvH4_5g30670 FvH4_5g31300
malus_domestica	MD15G1404600.v1.1
prunus_persica	Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1
pyrus_communis	pycom15g36200
rosa_chinensis	RchiOBHm_Chr7g0218801 RchiOBHm_Chr7g0225531 RchiOBHm_Chr7g0226391 RchiOBHm_Chr7g0231221
rosa_laevigata	RLG00000001428 RLG00000001721 RLG00000001808 RLG00000002341
rosa_multiflora	Rmu_sc0003876.1_g000039 Rmu_sc0004426.1_g000001 Rmu_sc0004571.1_g000021 Rmu_sc0012403.1_g000002 Rmu_sc0025113.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229430 Rroxscaffold_3G00233700
rosa_rugosa	Rorug07G0230700 Rorug07G0237000 Rorug07G0265200
rosa_samantha	Rh7AG321300 Rh7AG322200 Rh7AG372900 Rh7AG385100 Rh7AG418400 Rh7BG365200 Rh7BG371000 Rh7BG394100 Rh7CG337800 Rh7CG391100 Rh7CG404500 Rh7CG438200 Rh7DG376000 Rh7DG384200 Rh7DG412400
rosa_wichuraiana	Rw7G031740 Rw7G032190 Rw7G032350 Rw7G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	542
Acc36I	ACCTGC	1 cut(s)	542
Acc65I	GGTACC	1 cut(s)	629
AccB1I	GGYRCC	2 cut(s)	629, 1227
AccBSI	CCGCTC	1 cut(s)	931
AciI	CCGC	1 cut(s)	929
AclI	AACGTT	1 cut(s)	235
AclWI	GGATC	1 cut(s)	726
AcsI	RAATTY	6 cut(s)	96, 212, 369, 433, 445, 464
AfaI	GTAC	1 cut(s)	631
AfiI	CCNNNNNNNGG	2 cut(s)	416, 794
AflIII	ACRYGT	1 cut(s)	1278
AgsI	TTSAA	7 cut(s)	61, 161, 380, 568, 592, 968, 1033
AjiI	CACGTC	1 cut(s)	1006
AluBI	AGCT	2 cut(s)	507, 848
AluI	AGCT	2 cut(s)	507, 848
Alw21I	GWGCWC	1 cut(s)	829
Alw44I	GTGCAC	1 cut(s)	825
AlwI	GGATC	1 cut(s)	726
AlwNI	CAGNNNCTG	1 cut(s)	460
AoxI	GGCC	1 cut(s)	28
ApaLI	GTGCAC	1 cut(s)	825
ApeKI	GCWGC	3 cut(s)	507, 839, 1063
ApoI	RAATTY	6 cut(s)	96, 212, 369, 433, 445, 464
AseI	ATTAAT	1 cut(s)	1212
Asp718I	GGTACC	1 cut(s)	629
AspS9I	GGNCC	1 cut(s)	785
AsuHPI	GGTGA	5 cut(s)	19, 413, 622, 701, 911
AvaII	GGWCC	1 cut(s)	785
BaeGI	GKGCMC	1 cut(s)	829
BanI	GGYRCC	2 cut(s)	629, 1227
BanII	GRGCYC	1 cut(s)	801
BbsI	GAAGAC	1 cut(s)	635
Bbv12I	GWGCWC	1 cut(s)	829
BbvI	GCAGC	3 cut(s)	494, 851, 1075
BceAI	ACGGC	1 cut(s)	1171
BciVI	GTATCC	1 cut(s)	416
BfmI	CTRYAG	1 cut(s)	350
BfuAI	ACCTGC	1 cut(s)	542
BfuI	GTATCC	1 cut(s)	416
BisI	GCNGC	3 cut(s)	508, 840, 1064
BlsI	GCNGC	3 cut(s)	509, 841, 1065
Bme18I	GGWCC	1 cut(s)	785
BmgBI	CACGTC	1 cut(s)	1006
BmgT120I	GGNCC	1 cut(s)	785
BmiI	GGNNCC	3 cut(s)	631, 1101, 1229
BmsI	GCATC	2 cut(s)	350, 1251
BpiI	GAAGAC	1 cut(s)	635
BsaAI	YACGTR	1 cut(s)	886
BsaJI	CCNNGG	4 cut(s)	111, 185, 894, 1223
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	2 cut(s)	416, 794
Bse1I	ACTGG	3 cut(s)	374, 691, 860
Bse3DI	GCAATG	1 cut(s)	544
BseDI	CCNNGG	4 cut(s)	111, 185, 894, 1223
BseGI	GGATG	3 cut(s)	129, 827, 1266
BseLI	CCNNNNNNNGG	2 cut(s)	416, 794
BseMI	GCAATG	1 cut(s)	544
BseNI	ACTGG	3 cut(s)	374, 691, 860
BseRI	GAGGAG	1 cut(s)	62
BseSI	GKGCMC	1 cut(s)	829
BseXI	GCAGC	3 cut(s)	494, 851, 1075
BseYI	CCCAGC	1 cut(s)	424
BshFI	GGCC	1 cut(s)	30
BshNI	GGYRCC	2 cut(s)	629, 1227
BsiHKAI	GWGCWC	1 cut(s)	829
BsiSI	CCGG	1 cut(s)	843
BslI	CCNNNNNNNGG	2 cut(s)	416, 794
BsnI	GGCC	1 cut(s)	30
Bsp1286I	GDGCHC	2 cut(s)	801, 829
Bsp143I	GATC	2 cut(s)	252, 718
Bsp19I	CCATGG	2 cut(s)	185, 894
BspACI	CCGC	1 cut(s)	929
BspANI	GGCC	1 cut(s)	30
BspHI	TCATGA	2 cut(s)	952, 997
BspLI	GGNNCC	3 cut(s)	631, 1101, 1229
BspMI	ACCTGC	1 cut(s)	542
BspPI	GGATC	1 cut(s)	726
BspT107I	GGYRCC	2 cut(s)	629, 1227
BsrBI	CCGCTC	1 cut(s)	931
BsrDI	GCAATG	1 cut(s)	544
BsrI	ACTGG	3 cut(s)	374, 691, 860
BssECI	CCNNGG	4 cut(s)	111, 185, 894, 1223
BssMI	GATC	2 cut(s)	252, 718
BssT1I	CCWWGG	4 cut(s)	111, 185, 894, 1223
Bst4CI	ACNGT	5 cut(s)	119, 404, 500, 1070, 1078
Bst6I	CTCTTC	2 cut(s)	72, 162
BstBAI	YACGTR	1 cut(s)	886
BstC8I	GCNNGC	4 cut(s)	90, 736, 1232, 1266
BstDEI	CTNAG	3 cut(s)	297, 603, 936
BstDSI	CCRYGG	2 cut(s)	185, 894
BstEII	GGTNACC	1 cut(s)	419
BstF5I	GGATG	3 cut(s)	129, 827, 1266
BstKTI	GATC	2 cut(s)	255, 721
BstMBI	GATC	2 cut(s)	252, 718
BstMWI	GCNNNNNNNGC	2 cut(s)	513, 845
BstNSI	RCATGY	1 cut(s)	1282
BstPI	GGTNACC	1 cut(s)	419
BstSFI	CTRYAG	1 cut(s)	350
BstSLI	GKGCMC	1 cut(s)	829
BstSNI	TACGTA	1 cut(s)	886
BstV1I	GCAGC	3 cut(s)	494, 851, 1075
BstV2I	GAAGAC	1 cut(s)	635
BsuI	GTATCC	1 cut(s)	416
BsuRI	GGCC	1 cut(s)	30
BtgI	CCRYGG	2 cut(s)	185, 894
BtrI	CACGTC	1 cut(s)	1006
BtsCI	GGATG	3 cut(s)	129, 827, 1266
BtsIMutI	CAGTG	2 cut(s)	853, 1083
BveI	ACCTGC	1 cut(s)	542
Cac8I	GCNNGC	4 cut(s)	90, 736, 1232, 1266
CaiI	CAGNNNCTG	1 cut(s)	460
CciI	TCATGA	2 cut(s)	952, 997
Cfr13I	GGNCC	1 cut(s)	785
Csp6I	GTAC	1 cut(s)	630
CviAII	CATG	9 cut(s)	186, 221, 768, 895, 953, 998, 1096, 1238, 1279
CviQI	GTAC	1 cut(s)	630
DdeI	CTNAG	3 cut(s)	297, 603, 936
DpnI	GATC	2 cut(s)	254, 720
DpnII	GATC	2 cut(s)	252, 718
DraI	TTTAAA	1 cut(s)	469
Eam1104I	CTCTTC	2 cut(s)	72, 162
EarI	CTCTTC	2 cut(s)	72, 162
Eco105I	TACGTA	1 cut(s)	886
Eco130I	CCWWGG	4 cut(s)	111, 185, 894, 1223
Eco147I	AGGCCT	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	801
Eco47I	GGWCC	1 cut(s)	785
Eco91I	GGTNACC	1 cut(s)	419
EcoO65I	GGTNACC	1 cut(s)	419
EcoT14I	CCWWGG	4 cut(s)	111, 185, 894, 1223
EcoT38I	GRGCYC	1 cut(s)	801
ErhI	CCWWGG	4 cut(s)	111, 185, 894, 1223
FaeI	CATG	9 cut(s)	189, 224, 771, 898, 956, 1001, 1099, 1241, 1282
FatI	CATG	9 cut(s)	185, 220, 767, 894, 952, 997, 1095, 1237, 1278
FauNDI	CATATG	1 cut(s)	661
Fnu4HI	GCNGC	3 cut(s)	508, 840, 1064
FokI	GGATG	3 cut(s)	116, 834, 1273
FriOI	GRGCYC	1 cut(s)	801
Fsp4HI	GCNGC	3 cut(s)	508, 840, 1064
GluI	GCNGC	3 cut(s)	508, 840, 1064
GsaI	CCCAGC	1 cut(s)	428
HaeIII	GGCC	1 cut(s)	30
HapII	CCGG	1 cut(s)	843
Hin1II	CATG	9 cut(s)	189, 224, 771, 898, 956, 1001, 1099, 1241, 1282
HincII	GTYRAC	1 cut(s)	904
HindII	GTYRAC	1 cut(s)	904
HinfI	GANTC	8 cut(s)	152, 242, 380, 592, 656, 859, 1082, 1119
HpaII	CCGG	1 cut(s)	843
HphI	GGTGA	5 cut(s)	19, 413, 622, 701, 911
Hpy166II	GTNNAC	5 cut(s)	706, 827, 904, 1009, 1056
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	6 cut(s)	461, 589, 653, 716, 953, 998
Hpy8I	GTNNAC	5 cut(s)	706, 827, 904, 1009, 1056
HpyAV	CCTTC	6 cut(s)	318, 565, 601, 798, 1027, 1043
HpyCH4III	ACNGT	5 cut(s)	119, 404, 500, 1070, 1078
HpyCH4IV	ACGT	3 cut(s)	235, 885, 1005
HpyF10VI	GCNNNNNNNGC	2 cut(s)	513, 845
HpyF3I	CTNAG	3 cut(s)	297, 603, 936
HpySE526I	ACGT	3 cut(s)	235, 885, 1005
Hsp92II	CATG	9 cut(s)	189, 224, 771, 898, 956, 1001, 1099, 1241, 1282
KpnI	GGTACC	1 cut(s)	633
Kzo9I	GATC	2 cut(s)	252, 718
LmnI	GCTCC	2 cut(s)	845, 936
Lsp1109I	GCAGC	3 cut(s)	494, 851, 1075
LweI	GCATC	2 cut(s)	350, 1251
MaeII	ACGT	3 cut(s)	235, 885, 1005
MaeIII	GTNAC	6 cut(s)	7, 419, 482, 598, 682, 1252
MalI	GATC	2 cut(s)	254, 720
MbiI	CCGCTC	1 cut(s)	931
MboI	GATC	2 cut(s)	252, 718
MboII	GAAGA	9 cut(s)	73, 76, 89, 149, 313, 580, 635, 854, 1219
MhlI	GDGCHC	2 cut(s)	801, 829
MluCI	AATT	9 cut(s)	96, 212, 369, 433, 445, 464, 563, 880, 969
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	2 cut(s)	256, 1204
MnlI	CCTC	9 cut(s)	40, 45, 67, 162, 569, 769, 994, 1245, 1267
MseI	TTAA	9 cut(s)	35, 201, 431, 468, 503, 756, 870, 1115, 1212
MslI	CAYNNNNRTG	1 cut(s)	870
MspI	CCGG	1 cut(s)	843
MwoI	GCNNNNNNNGC	2 cut(s)	513, 845
NcoI	CCATGG	2 cut(s)	185, 894
NdeI	CATATG	1 cut(s)	661
NdeII	GATC	2 cut(s)	252, 718
NlaIII	CATG	9 cut(s)	189, 224, 771, 898, 956, 1001, 1099, 1241, 1282
NlaIV	GGNNCC	3 cut(s)	631, 1101, 1229
NmuCI	GTSAC	4 cut(s)	7, 419, 482, 598
NspI	RCATGY	1 cut(s)	1282
PagI	TCATGA	2 cut(s)	952, 997
PaqCI	CACCTGC	1 cut(s)	542
PceI	AGGCCT	1 cut(s)	30
PciI	ACATGT	1 cut(s)	1278
PfeI	GAWTC	7 cut(s)	242, 380, 592, 656, 859, 1082, 1119
PkrI	GCNGC	3 cut(s)	509, 841, 1065
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Ppu21I	YACGTR	1 cut(s)	886
PscI	ACATGT	1 cut(s)	1278
PshBI	ATTAAT	1 cut(s)	1212
Psp1406I	AACGTT	1 cut(s)	235
PspEI	GGTNACC	1 cut(s)	419
PspFI	CCCAGC	1 cut(s)	424
PspN4I	GGNNCC	3 cut(s)	631, 1101, 1229
PspPI	GGNCC	1 cut(s)	785
PstNI	CAGNNNCTG	1 cut(s)	460
RsaI	GTAC	1 cut(s)	631
RsaNI	GTAC	1 cut(s)	630
RseI	CAYNNNNRTG	1 cut(s)	870
SaqAI	TTAA	9 cut(s)	35, 201, 431, 468, 503, 756, 870, 1115, 1212
SatI	GCNGC	3 cut(s)	508, 840, 1064
Sau3AI	GATC	2 cut(s)	252, 718
Sau96I	GGNCC	1 cut(s)	785
SchI	GAGTC	1 cut(s)	146
SduI	GDGCHC	2 cut(s)	801, 829
SfaNI	GCATC	2 cut(s)	350, 1251
SfcI	CTRYAG	1 cut(s)	350
SinI	GGWCC	1 cut(s)	785
SmiMI	CAYNNNNRTG	1 cut(s)	870
SnaBI	TACGTA	1 cut(s)	886
Sse9I	AATT	9 cut(s)	96, 212, 369, 433, 445, 464, 563, 880, 969
SseBI	AGGCCT	1 cut(s)	30
SsiI	CCGC	1 cut(s)	929
SspI	AATATT	2 cut(s)	523, 549
StuI	AGGCCT	1 cut(s)	30
StyI	CCWWGG	4 cut(s)	111, 185, 894, 1223
TaaI	ACNGT	5 cut(s)	119, 404, 500, 1070, 1078
TaiI	ACGT	3 cut(s)	238, 888, 1008
TaqI	TCGA	1 cut(s)	167
TasI	AATT	9 cut(s)	96, 212, 369, 433, 445, 464, 563, 880, 969
TfiI	GAWTC	7 cut(s)	242, 380, 592, 656, 859, 1082, 1119
Tru1I	TTAA	9 cut(s)	35, 201, 431, 468, 503, 756, 870, 1115, 1212
Tru9I	TTAA	9 cut(s)	35, 201, 431, 468, 503, 756, 870, 1115, 1212
TscAI	CASTG	2 cut(s)	860, 1083
TseFI	GTSAC	4 cut(s)	7, 419, 482, 598
TseI	GCWGC	3 cut(s)	507, 839, 1063
Tsp45I	GTSAC	4 cut(s)	7, 419, 482, 598
TspDTI	ATGAA	6 cut(s)	90, 205, 209, 320, 824, 854
TspGWI	ACGGA	1 cut(s)	1130
TspRI	CASTG	2 cut(s)	860, 1083
VneI	GTGCAC	1 cut(s)	825
VpaK11BI	GGWCC	1 cut(s)	785
VspI	ATTAAT	1 cut(s)	1212
XapI	RAATTY	6 cut(s)	96, 212, 369, 433, 445, 464
XceI	RCATGY	1 cut(s)	1282
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1093

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.