Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001689

Physical Location & Seq

Genomic Coordinates Forward (+)

57952854 .. 57954833

Gene Structure 1980 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG412400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGCAAAATCAATAGGTAGCAAGAACTGGGGCCTATTGAGGCTAGTGGAGGAAAGATCATTGAGCAAGAAAACAGAGGAAGAGAAAAAACATCCACAAGAAACACAGATCCCTTATCTCCCTGAAGATTGTATCTCAAGCATCCTTGTACGACTTCCTATTGAATCTCTTCAGAGGTCAAGTTTTGTGTGCAAGCCTTGGTTTAGCATAATTAAAAGTCCCAAATTCATCGATGCTCATCTCAACCGATCTGAATCTGTTTTGATTTTTCTATCGCCAATAAGAGAGGAAATGTCATATTCTTTTTCCATGGCATCTGTTCCAGAAGAGAATCCGAACACCGTCTCAGTTGAATCAAAACTTCTACCGCCAAATTGTATCCCCATTTTCAGCAACCCGTCCCTAAACTCTACAAAATTTTCTGTCCAGTTTCTTGCAATTAAAAATGGTAAGACTGAGATAGGAGGGTACAGTTTAAATTGCTTGGGAAGTATCAGAGCCACCTGCAATGGTCTAATTTTACTTGATAACAAAGTTAAGAAGGGAGGACTTATAGTCTTGAATCCTGTGACCAGGAAGCTGATTGCTCTTCCTCTTGGTACCTTACATCGCCCATATAATGAATCCTATGGTTTTGCATTGAGTGATGTCACCGGTGAATATAAAATAGTCCATTTGTTTCGGGATGACGGGTTTGTCAGCTGTGAGATTTTGAGTCTTAGAAAAAAGGCATGGAGAGGGGTCAATGGTCCTGCATTCGGGCCCTTTGGTTGGTTCGGATATGCACCTGTTTCAGCAATTGGAGCTTTGCACTGGATTCCTCAAGTTGATCGGAGCGATTACATTGTTTCGGTGGAAGTCCACAAGGAGAAATTTCACCAAATAATGCTCCCCAAAAGTTGCAGAACTCATGACAGGATTATTGAAATGGGAGGCGCATTGGGTTTTGTCATTCATGAGGAGATAAACCACATTGACGTCTGGATTTTGAAGGGTTTCTGTGGGGAAGTCTGGACAAAGAATCACAGTATCACAGTGGGTTCCATTATAGACATGATTCCCTATTTCAGTTTAAGGATCAAGGGAGATATTATTTTCAAGAGAGACGAAGATGGCTCGCTATATGCTTATGACTTTCAGCAAGAAGACTTGACGAAGGTTGAGATGGTAGAGGAATGTATCCCAACGTCTTCTGCTACATGCCTACCTCATGTCAACAGCCTTGTATCATGGATGGATGAAAGTTCGGACGTGCATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

420

Amino Acids

47.25

Weight (kDa)

6.37

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	40 - 76	1.7e-07	F-box domain
FBA_3	PF08268	141 - 389	2e-18	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30670 FvH4_5g30670 FvH4_5g30670 FvH4_5g31300
malus_domestica	MD15G1404600.v1.1
prunus_persica	Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1
pyrus_communis	pycom15g36200
rosa_chinensis	RchiOBHm_Chr7g0218801 RchiOBHm_Chr7g0225531 RchiOBHm_Chr7g0226391 RchiOBHm_Chr7g0231221
rosa_laevigata	RLG00000001428 RLG00000001721 RLG00000001808 RLG00000002341
rosa_multiflora	Rmu_sc0003876.1_g000039 Rmu_sc0004426.1_g000001 Rmu_sc0004571.1_g000021 Rmu_sc0012403.1_g000002 Rmu_sc0025113.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229430 Rroxscaffold_3G00233700
rosa_rugosa	Rorug07G0230700 Rorug07G0237000 Rorug07G0265200
rosa_samantha	Rh7AG321300 Rh7AG322200 Rh7AG372900 Rh7AG385100 Rh7AG418400 Rh7BG365200 Rh7BG371000 Rh7BG394100 Rh7CG337800 Rh7CG391100 Rh7CG404500 Rh7CG438200 Rh7DG376000 Rh7DG384200 Rh7DG412400
rosa_wichuraiana	Rw7G031740 Rw7G032190 Rw7G032350 Rw7G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	512
AasI	GACNNNNNNGTC	1 cut(s)	695
AatII	GACGTC	1 cut(s)	981
Acc36I	ACCTGC	1 cut(s)	512
Acc65I	GGTACC	1 cut(s)	599
AccB1I	GGYRCC	1 cut(s)	599
AciI	CCGC	1 cut(s)	368
AclWI	GGATC	2 cut(s)	103, 1085
AcsI	RAATTY	3 cut(s)	224, 416, 872
AcuI	CTGAAG	2 cut(s)	144, 155
AcyI	GRCGYC	1 cut(s)	978
AfaI	GTAC	3 cut(s)	150, 470, 601
AfiI	CCNNNNNNNGG	2 cut(s)	758, 771
AgeI	ACCGGT	1 cut(s)	653
AgsI	TTSAA	6 cut(s)	164, 353, 562, 926, 991, 1099
AhdI	GACNNNNNGTC	1 cut(s)	554
AjiI	CACGTC	1 cut(s)	1252
AjnI	CCWGG	1 cut(s)	572
AluBI	AGCT	3 cut(s)	580, 702, 806
AluI	AGCT	3 cut(s)	580, 702, 806
Alw26I	GTCTC	2 cut(s)	349, 1098
AlwI	GGATC	2 cut(s)	103, 1085
AoxI	GGCC	2 cut(s)	31, 761
ApaI	GGGCCC	1 cut(s)	765
ApoI	RAATTY	3 cut(s)	224, 416, 872
AsiGI	ACCGGT	1 cut(s)	653
Asp700I	GAANNNNTTC	2 cut(s)	168, 995
Asp718I	GGTACC	1 cut(s)	599
AspLEI	GCGC	1 cut(s)	938
AspS9I	GGNCC	4 cut(s)	31, 749, 761, 762
AsuHPI	GGTGA	3 cut(s)	643, 668, 869
AvaII	GGWCC	1 cut(s)	749
BaeGI	GKGCMC	1 cut(s)	765
BanI	GGYRCC	1 cut(s)	599
BanII	GRGCYC	1 cut(s)	765
BbsI	GAAGAC	2 cut(s)	1152, 1182
BccI	CCATC	3 cut(s)	1106, 1159, 1228
BciT130I	CCWGG	1 cut(s)	574
BciVI	GTATCC	2 cut(s)	389, 1190
BcoDI	GTCTC	2 cut(s)	349, 1098
BfaI	CTAG	1 cut(s)	44
BfuAI	ACCTGC	1 cut(s)	512
BfuI	GTATCC	2 cut(s)	389, 1190
Bme1390I	CCNGG	1 cut(s)	574
Bme18I	GGWCC	1 cut(s)	749
BmeRI	GACNNNNNGTC	1 cut(s)	554
BmgBI	CACGTC	1 cut(s)	1252
BmgT120I	GGNCC	4 cut(s)	31, 749, 761, 762
BmiI	GGNNCC	4 cut(s)	32, 601, 763, 1042
BmrFI	CCNGG	1 cut(s)	574
BmrI	ACTGGG	1 cut(s)	37
BmsI	GCATC	3 cut(s)	150, 223, 323
BmuI	ACTGGG	1 cut(s)	37
BpiI	GAAGAC	2 cut(s)	1152, 1182
BpuEI	CTTGAG	2 cut(s)	121, 807
Bsa29I	ATCGAT	1 cut(s)	231
BsaBI	GATNNNNATC	2 cut(s)	237, 253
BsaHI	GRCGYC	1 cut(s)	978
BsaJI	CCNNGG	2 cut(s)	197, 309
BsaWI	WCCGGW	1 cut(s)	653
Bsc4I	CCNNNNNNNGG	2 cut(s)	758, 771
Bse118I	RCCGGY	1 cut(s)	653
Bse1I	ACTGG	3 cut(s)	32, 427, 818
Bse3DI	GCAATG	1 cut(s)	514
Bse8I	GATNNNNATC	2 cut(s)	237, 253
BseBI	CCWGG	1 cut(s)	574
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	197, 309
BseGI	GGATG	5 cut(s)	91, 141, 691, 1239, 1243
BseJI	GATNNNNATC	2 cut(s)	237, 253
BseLI	CCNNNNNNNGG	2 cut(s)	758, 771
BseMI	GCAATG	1 cut(s)	514
BseMII	CTCAG	2 cut(s)	360, 447
BseNI	ACTGG	3 cut(s)	32, 427, 818
BseRI	GAGGAG	1 cut(s)	974
BseSI	GKGCMC	1 cut(s)	765
BshFI	GGCC	2 cut(s)	33, 763
BshNI	GGYRCC	1 cut(s)	599
BshTI	ACCGGT	1 cut(s)	653
BshVI	ATCGAT	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	654
BslFI	GGGAC	2 cut(s)	204, 385
BslI	CCNNNNNNNGG	2 cut(s)	758, 771
BsmAI	GTCTC	2 cut(s)	349, 1098
BsmBI	CGTCTC	2 cut(s)	349, 1098
BsmFI	GGGAC	2 cut(s)	204, 385
BsmI	GAATGC	1 cut(s)	755
BsnI	GGCC	2 cut(s)	33, 763
Bsp120I	GGGCCC	1 cut(s)	761
Bsp1286I	GDGCHC	1 cut(s)	765
Bsp143I	GATC	5 cut(s)	56, 108, 248, 829, 1077
Bsp19I	CCATGG	1 cut(s)	309
BspACI	CCGC	1 cut(s)	368
BspANI	GGCC	2 cut(s)	33, 763
BspCNI	CTCAG	2 cut(s)	359, 448
BspDI	ATCGAT	1 cut(s)	231
BspHI	TCATGA	2 cut(s)	910, 955
BspLI	GGNNCC	4 cut(s)	32, 601, 763, 1042
BspMI	ACCTGC	1 cut(s)	512
BspPI	GGATC	2 cut(s)	103, 1085
BspQI	GCTCTTC	1 cut(s)	594
BspT107I	GGYRCC	1 cut(s)	599
BsrDI	GCAATG	1 cut(s)	514
BsrFI	RCCGGY	1 cut(s)	653
BsrI	ACTGG	3 cut(s)	32, 427, 818
BssAI	RCCGGY	1 cut(s)	653
BssECI	CCNNGG	2 cut(s)	197, 309
BssMI	GATC	5 cut(s)	56, 108, 248, 829, 1077
BssNI	GRCGYC	1 cut(s)	978
BssT1I	CCWWGG	2 cut(s)	197, 309
Bst2UI	CCWGG	1 cut(s)	574
Bst4CI	ACNGT	4 cut(s)	343, 473, 1028, 1036
Bst6I	CTCTTC	4 cut(s)	75, 174, 321, 594
BstACI	GRCGYC	1 cut(s)	978
BstC8I	GCNNGC	2 cut(s)	194, 1118
BstDEI	CTNAG	3 cut(s)	346, 456, 719
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	5 cut(s)	91, 141, 691, 1239, 1243
BstHHI	GCGC	1 cut(s)	938
BstKTI	GATC	5 cut(s)	59, 111, 251, 832, 1080
BstMAI	GTCTC	2 cut(s)	349, 1098
BstMBI	GATC	5 cut(s)	56, 108, 248, 829, 1077
BstMWI	GCNNNNNNNGC	1 cut(s)	803
BstNI	CCWGG	1 cut(s)	574
BstNSI	RCATGY	1 cut(s)	1203
BstSCI	CCNGG	1 cut(s)	572
BstSLI	GKGCMC	1 cut(s)	765
BstV2I	GAAGAC	2 cut(s)	1152, 1182
BstX2I	RGATCY	1 cut(s)	108
BstYI	RGATCY	1 cut(s)	108
Bsu15I	ATCGAT	1 cut(s)	231
BsuI	GTATCC	2 cut(s)	389, 1190
BsuRI	GGCC	2 cut(s)	33, 763
BsuTUI	ATCGAT	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	309
BtgZI	GCGATG	1 cut(s)	593
BtrI	CACGTC	1 cut(s)	1252
BtsCI	GGATG	5 cut(s)	91, 141, 691, 1239, 1243
BtsIMutI	CAGTG	2 cut(s)	811, 1041
BveI	ACCTGC	1 cut(s)	512
Cac8I	GCNNGC	2 cut(s)	194, 1118
CciI	TCATGA	2 cut(s)	910, 955
CfoI	GCGC	1 cut(s)	938
Cfr10I	RCCGGY	1 cut(s)	653
Cfr13I	GGNCC	4 cut(s)	31, 749, 761, 762
ClaI	ATCGAT	1 cut(s)	231
Csp6I	GTAC	3 cut(s)	149, 469, 600
CspAI	ACCGGT	1 cut(s)	653
CviAII	CATG	9 cut(s)	310, 732, 911, 956, 1054, 1200, 1211, 1230, 1256
CviQI	GTAC	3 cut(s)	149, 469, 600
DdeI	CTNAG	3 cut(s)	346, 456, 719
DpnI	GATC	5 cut(s)	58, 110, 250, 831, 1079
DpnII	GATC	5 cut(s)	56, 108, 248, 829, 1077
DraI	TTTAAA	1 cut(s)	477
DrdI	GACNNNNNNGTC	1 cut(s)	695
DriI	GACNNNNNGTC	1 cut(s)	554
DseDI	GACNNNNNNGTC	1 cut(s)	695
Eam1104I	CTCTTC	4 cut(s)	75, 174, 321, 594
Eam1105I	GACNNNNNGTC	1 cut(s)	554
EarI	CTCTTC	4 cut(s)	75, 174, 321, 594
Eco130I	CCWWGG	2 cut(s)	197, 309
Eco24I	GRGCYC	1 cut(s)	765
Eco47I	GGWCC	1 cut(s)	749
Eco57I	CTGAAG	2 cut(s)	144, 155
EcoO109I	RGGNCCY	2 cut(s)	31, 762
EcoRII	CCWGG	1 cut(s)	572
EcoT14I	CCWWGG	2 cut(s)	197, 309
EcoT38I	GRGCYC	1 cut(s)	765
ErhI	CCWWGG	2 cut(s)	197, 309
Esp3I	CGTCTC	2 cut(s)	349, 1098
FaeI	CATG	9 cut(s)	313, 735, 914, 959, 1057, 1203, 1214, 1233, 1259
FaqI	GGGAC	2 cut(s)	204, 385
FatI	CATG	9 cut(s)	309, 731, 910, 955, 1053, 1199, 1210, 1229, 1255
FokI	GGATG	5 cut(s)	78, 128, 698, 1246, 1250
FriOI	GRGCYC	1 cut(s)	765
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	1 cut(s)	937
HaeIII	GGCC	2 cut(s)	33, 763
HapII	CCGG	1 cut(s)	654
HhaI	GCGC	1 cut(s)	938
Hin1I	GRCGYC	1 cut(s)	978
Hin1II	CATG	9 cut(s)	313, 735, 914, 959, 1057, 1203, 1214, 1233, 1259
Hin6I	GCGC	1 cut(s)	936
HinP1I	GCGC	1 cut(s)	936
HincII	GTYRAC	1 cut(s)	1216
HindII	GTYRAC	1 cut(s)	1216
HpaII	CCGG	1 cut(s)	654
HphI	GGTGA	3 cut(s)	643, 668, 869
Hpy166II	GTNNAC	2 cut(s)	862, 1216
Hpy188I	TCNGA	7 cut(s)	174, 253, 336, 497, 779, 834, 1249
Hpy188III	TCNNGA	8 cut(s)	323, 559, 683, 911, 956, 982, 1012, 1099
Hpy8I	GTNNAC	2 cut(s)	862, 1216
HpyAV	CCTTC	3 cut(s)	535, 985, 1150
HpyCH4III	ACNGT	4 cut(s)	343, 473, 1028, 1036
HpyCH4IV	ACGT	3 cut(s)	978, 1187, 1251
HpyCH4V	TGCA	9 cut(s)	192, 437, 507, 638, 755, 785, 811, 903, 1255
HpyF10VI	GCNNNNNNNGC	1 cut(s)	803
HpyF3I	CTNAG	3 cut(s)	346, 456, 719
HpySE526I	ACGT	3 cut(s)	978, 1187, 1251
Hsp92I	GRCGYC	1 cut(s)	978
Hsp92II	CATG	9 cut(s)	313, 735, 914, 959, 1057, 1203, 1214, 1233, 1259
HspAI	GCGC	1 cut(s)	936
KpnI	GGTACC	1 cut(s)	603
Kzo9I	GATC	5 cut(s)	56, 108, 248, 829, 1077
LguI	GCTCTTC	1 cut(s)	594
LmnI	GCTCC	3 cut(s)	803, 834, 894
LweI	GCATC	3 cut(s)	150, 223, 323
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	3 cut(s)	978, 1187, 1251
MaeIII	GTNAC	2 cut(s)	568, 649
MalI	GATC	5 cut(s)	58, 110, 250, 831, 1079
MboI	GATC	5 cut(s)	56, 108, 248, 829, 1077
MboII	GAAGA	8 cut(s)	92, 137, 161, 338, 581, 1121, 1157, 1182
MfeI	CAATTG	1 cut(s)	798
MflI	RGATCY	1 cut(s)	108
MhlI	GDGCHC	1 cut(s)	765
MluCI	AATT	9 cut(s)	210, 224, 373, 416, 438, 478, 516, 798, 872
MlyI	GAGTC	1 cut(s)	724
MroXI	GAANNNNTTC	2 cut(s)	168, 995
MseI	TTAA	5 cut(s)	213, 441, 476, 537, 1073
MspA1I	CMGCKG	1 cut(s)	702
MspI	CCGG	1 cut(s)	654
MspR9I	CCNGG	1 cut(s)	574
MunI	CAATTG	1 cut(s)	798
Mva1269I	GAATGC	1 cut(s)	755
MvaI	CCWGG	1 cut(s)	574
MwoI	GCNNNNNNNGC	1 cut(s)	803
NcoI	CCATGG	1 cut(s)	309
NdeII	GATC	5 cut(s)	56, 108, 248, 829, 1077
NlaIII	CATG	9 cut(s)	313, 735, 914, 959, 1057, 1203, 1214, 1233, 1259
NlaIV	GGNNCC	4 cut(s)	32, 601, 763, 1042
NmuCI	GTSAC	2 cut(s)	568, 649
NspI	RCATGY	1 cut(s)	1203
PagI	TCATGA	2 cut(s)	910, 955
PaqCI	CACCTGC	1 cut(s)	512
PciSI	GCTCTTC	1 cut(s)	594
PctI	GAATGC	1 cut(s)	755
PdmI	GAANNNNTTC	2 cut(s)	168, 995
PfeI	GAWTC	9 cut(s)	164, 254, 331, 353, 562, 623, 817, 1021, 1057
PinAI	ACCGGT	1 cut(s)	653
PleI	GAGTC	1 cut(s)	723
PpsI	GAGTC	1 cut(s)	723
Psp6I	CCWGG	1 cut(s)	572
PspGI	CCWGG	1 cut(s)	572
PspN4I	GGNNCC	4 cut(s)	32, 601, 763, 1042
PspOMI	GGGCCC	1 cut(s)	761
PspPI	GGNCC	4 cut(s)	31, 749, 761, 762
PsuI	RGATCY	1 cut(s)	108
PvuII	CAGCTG	1 cut(s)	702
RsaI	GTAC	3 cut(s)	150, 470, 601
RsaNI	GTAC	3 cut(s)	149, 469, 600
SapI	GCTCTTC	1 cut(s)	594
SaqAI	TTAA	5 cut(s)	213, 441, 476, 537, 1073
Sau3AI	GATC	5 cut(s)	56, 108, 248, 829, 1077
Sau96I	GGNCC	4 cut(s)	31, 749, 761, 762
SchI	GAGTC	1 cut(s)	724
ScrFI	CCNGG	1 cut(s)	574
SduI	GDGCHC	1 cut(s)	765
SfaNI	GCATC	3 cut(s)	150, 223, 323
SgrAI	CRCCGGYG	1 cut(s)	653
SinI	GGWCC	1 cut(s)	749
SmlI	CTYRAG	2 cut(s)	136, 822
SmoI	CTYRAG	2 cut(s)	136, 822
Sse9I	AATT	9 cut(s)	210, 224, 373, 416, 438, 478, 516, 798, 872
SsiI	CCGC	1 cut(s)	368
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	572
StyI	CCWWGG	2 cut(s)	197, 309
TaaI	ACNGT	4 cut(s)	343, 473, 1028, 1036
TaiI	ACGT	3 cut(s)	981, 1190, 1254
TaqI	TCGA	1 cut(s)	231
TasI	AATT	9 cut(s)	210, 224, 373, 416, 438, 478, 516, 798, 872
TfiI	GAWTC	9 cut(s)	164, 254, 331, 353, 562, 623, 817, 1021, 1057
Tru1I	TTAA	5 cut(s)	213, 441, 476, 537, 1073
Tru9I	TTAA	5 cut(s)	213, 441, 476, 537, 1073
TscAI	CASTG	2 cut(s)	818, 1041
TseFI	GTSAC	2 cut(s)	568, 649
Tsp45I	GTSAC	2 cut(s)	568, 649
TspDTI	ATGAA	4 cut(s)	217, 636, 944, 1254
TspRI	CASTG	2 cut(s)	818, 1041
VpaK11BI	GGWCC	1 cut(s)	749
XapI	RAATTY	3 cut(s)	224, 416, 872
XceI	RCATGY	1 cut(s)	1203
XmnI	GAANNNNTTC	2 cut(s)	168, 995
XspI	CTAG	1 cut(s)	44
ZraI	GACGTC	1 cut(s)	979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.