Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004426.1

Orthogroup ID

OG0001689

Physical Location & Seq

Genomic Coordinates Reverse (-)

101 .. 4295

Gene Structure 4195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004426.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgggatctcagtcagtgtgttacaagggggtaatggttaggcagattagccgagggcagccaccggagcctcttgatttctttatctggactgttgaggatgttggtctgtggttggaagagataaatctgggcagttaccggcaaacatttaaagaaaatggtgtcaatggagagtacctggaaggaatgtccatgttcactactgagcagattcttcgttttataagaaaataccacatgaaatggggggactttatcacgctctgtaaggaactaaggcgaattaaagccttaaattctccaaagaattgtgtcaagtttctggaatttaaaaatggtaagagtggcataggagagtacagcttaagccgccgggccagtgacatcaaagccacctgcaatggtctaatattgcttgacaacaatttgaagaagggaggagtaatagtcttgaatcctgtcactatgccagaaaagcaatcagacgacagaggagatctgtcgtctgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 SAM_2

Protein Analysis

171

Amino Acids

19.47

Weight (kDa)

8.64

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30670 FvH4_5g30670 FvH4_5g30670 FvH4_5g31300
malus_domestica	MD15G1404600.v1.1
prunus_persica	Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1
pyrus_communis	pycom15g36200
rosa_chinensis	RchiOBHm_Chr7g0218801 RchiOBHm_Chr7g0225531 RchiOBHm_Chr7g0226391 RchiOBHm_Chr7g0231221
rosa_laevigata	RLG00000001428 RLG00000001721 RLG00000001808 RLG00000002341
rosa_multiflora	Rmu_sc0003876.1_g000039 Rmu_sc0004426.1_g000001 Rmu_sc0004571.1_g000021 Rmu_sc0012403.1_g000002 Rmu_sc0025113.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229430 Rroxscaffold_3G00233700
rosa_rugosa	Rorug07G0230700 Rorug07G0237000 Rorug07G0265200
rosa_samantha	Rh7AG321300 Rh7AG322200 Rh7AG372900 Rh7AG385100 Rh7AG418400 Rh7BG365200 Rh7BG371000 Rh7BG394100 Rh7CG337800 Rh7CG391100 Rh7CG404500 Rh7CG438200 Rh7DG376000 Rh7DG384200 Rh7DG412400
rosa_wichuraiana	Rw7G031740 Rw7G032190 Rw7G032350 Rw7G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	227
AarI	CACCTGC	1 cut(s)	407
Acc36I	ACCTGC	1 cut(s)	407
AciI	CCGC	1 cut(s)	373
AclWI	GGATC	1 cut(s)	13
AcsI	RAATTY	2 cut(s)	298, 329
AfaI	GTAC	2 cut(s)	179, 362
AflII	CTTAAG	1 cut(s)	367
AgsI	TTSAA	2 cut(s)	433, 457
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	1 cut(s)	366
AluI	AGCT	1 cut(s)	366
AlwI	GGATC	1 cut(s)	13
AoxI	GGCC	1 cut(s)	378
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	2 cut(s)	298, 329
AspS9I	GGNCC	1 cut(s)	378
AsuC2I	CCSGG	1 cut(s)	377
BbvI	GCAGC	1 cut(s)	70
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BciT130I	CCWGG	1 cut(s)	182
BcnI	CCSGG	1 cut(s)	377
BfrI	CTTAAG	1 cut(s)	367
BfuAI	ACCTGC	1 cut(s)	407
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	2 cut(s)	59, 373
BlsI	GCNGC	2 cut(s)	60, 374
Bme1390I	CCNGG	2 cut(s)	182, 377
BmgT120I	GGNCC	1 cut(s)	378
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	2 cut(s)	182, 377
BpuMI	CCSGG	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	52
BsaWI	WCCGGW	1 cut(s)	64
BsaXI	ACNNNNNCTCC	2 cut(s)	435, 465
Bse118I	RCCGGY	1 cut(s)	141
Bse1I	ACTGG	1 cut(s)	381
Bse3DI	GCAATG	1 cut(s)	409
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	1 cut(s)	106
BseMI	GCAATG	1 cut(s)	409
BseMII	CTCAG	2 cut(s)	23, 198
BseNI	ACTGG	1 cut(s)	381
BseRI	GAGGAG	2 cut(s)	456, 510
BseXI	GCAGC	1 cut(s)	70
BshFI	GGCC	1 cut(s)	380
BsiSI	CCGG	3 cut(s)	65, 142, 376
BslFI	GGGAC	1 cut(s)	266
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	1 cut(s)	380
Bsp143I	GATC	2 cut(s)	5, 499
BspACI	CCGC	1 cut(s)	373
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	2 cut(s)	22, 199
BspLI	GGNNCC	1 cut(s)	69
BspMI	ACCTGC	1 cut(s)	407
BspPI	GGATC	1 cut(s)	13
BspTI	CTTAAG	1 cut(s)	367
BsrDI	GCAATG	1 cut(s)	409
BsrFI	RCCGGY	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	381
BssAI	RCCGGY	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	2 cut(s)	5, 499
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	94
Bst6I	CTCTTC	1 cut(s)	114
BstAFI	CTTAAG	1 cut(s)	367
BstDEI	CTNAG	3 cut(s)	9, 207, 278
BstF5I	GGATG	1 cut(s)	106
BstKTI	GATC	2 cut(s)	8, 502
BstMBI	GATC	2 cut(s)	5, 499
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 372, 478
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	2 cut(s)	180, 375
BstV1I	GCAGC	1 cut(s)	70
BstX2I	RGATCY	2 cut(s)	5, 499
BstYI	RGATCY	2 cut(s)	5, 499
BsuRI	GGCC	1 cut(s)	380
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	2 cut(s)	21, 388
BveI	ACCTGC	1 cut(s)	407
Cfr10I	RCCGGY	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	378
Csp6I	GTAC	2 cut(s)	178, 361
CviAII	CATG	2 cut(s)	196, 241
CviJI	RGCY	8 cut(s)	51, 61, 70, 293, 366, 372, 380, 395
CviKI_1	RGCY	8 cut(s)	51, 61, 70, 293, 366, 372, 380, 395
CviQI	GTAC	2 cut(s)	178, 361
DdeI	CTNAG	3 cut(s)	9, 207, 278
DpnI	GATC	2 cut(s)	7, 501
DpnII	GATC	2 cut(s)	5, 499
DraI	TTTAAA	2 cut(s)	154, 334
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	180
FaeI	CATG	2 cut(s)	199, 244
FaiI	YATR	5 cut(s)	197, 227, 242, 353, 470
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	2 cut(s)	195, 240
Fnu4HI	GCNGC	2 cut(s)	59, 373
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	2 cut(s)	59, 373
GluI	GCNGC	2 cut(s)	59, 373
HaeIII	GGCC	1 cut(s)	380
HapII	CCGG	3 cut(s)	65, 142, 376
Hin1II	CATG	2 cut(s)	199, 244
HinfI	GANTC	2 cut(s)	214, 457
HpaII	CCGG	3 cut(s)	65, 142, 376
Hpy166II	GTNNAC	1 cut(s)	201
Hpy188I	TCNGA	2 cut(s)	487, 511
Hpy188III	TCNNGA	4 cut(s)	74, 88, 326, 454
Hpy8I	GTNNAC	1 cut(s)	201
HpyAV	CCTTC	2 cut(s)	179, 430
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4V	TGCA	1 cut(s)	402
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 372, 478
HpyF3I	CTNAG	3 cut(s)	9, 207, 278
Hsp92II	CATG	2 cut(s)	199, 244
Kzo9I	GATC	2 cut(s)	5, 499
LmnI	GCTCC	1 cut(s)	67
Lsp1109I	GCAGC	1 cut(s)	70
MaeIII	GTNAC	4 cut(s)	20, 137, 383, 463
MalI	GATC	2 cut(s)	7, 501
MboI	GATC	2 cut(s)	5, 499
MboII	GAAGA	3 cut(s)	131, 209, 445
MflI	RGATCY	2 cut(s)	5, 499
MluCI	AATT	5 cut(s)	285, 298, 310, 329, 427
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	5 cut(s)	47, 81, 91, 434, 488
MseI	TTAA	6 cut(s)	153, 288, 296, 333, 368, 514
MspCI	CTTAAG	1 cut(s)	367
MspI	CCGG	3 cut(s)	65, 142, 376
MspR9I	CCNGG	2 cut(s)	182, 377
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	3 cut(s)	67, 372, 478
NciI	CCSGG	1 cut(s)	377
NdeII	GATC	2 cut(s)	5, 499
NlaIII	CATG	2 cut(s)	199, 244
NlaIV	GGNNCC	1 cut(s)	69
NmeAIII	GCCGAG	1 cut(s)	77
NmuCI	GTSAC	2 cut(s)	383, 463
PaqCI	CACCTGC	1 cut(s)	407
PfeI	GAWTC	2 cut(s)	214, 457
PkrI	GCNGC	2 cut(s)	60, 374
PsiI	TTATAA	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	1 cut(s)	378
PsuI	RGATCY	2 cut(s)	5, 499
RsaI	GTAC	2 cut(s)	179, 362
RsaNI	GTAC	2 cut(s)	178, 361
SaqAI	TTAA	6 cut(s)	153, 288, 296, 333, 368, 514
SatI	GCNGC	2 cut(s)	59, 373
Sau3AI	GATC	2 cut(s)	5, 499
Sau96I	GGNCC	1 cut(s)	378
ScrFI	CCNGG	2 cut(s)	182, 377
SetI	ASST	3 cut(s)	183, 368, 401
SmlI	CTYRAG	1 cut(s)	367
SmoI	CTYRAG	1 cut(s)	367
Sse9I	AATT	5 cut(s)	285, 298, 310, 329, 427
SsiI	CCGC	1 cut(s)	373
SspI	AATATT	1 cut(s)	414
StyD4I	CCNGG	2 cut(s)	180, 375
TaaI	ACNGT	1 cut(s)	94
TasI	AATT	5 cut(s)	285, 298, 310, 329, 427
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	1 cut(s)	375
TfiI	GAWTC	2 cut(s)	214, 457
Tru1I	TTAA	6 cut(s)	153, 288, 296, 333, 368, 514
Tru9I	TTAA	6 cut(s)	153, 288, 296, 333, 368, 514
TscAI	CASTG	2 cut(s)	21, 388
TseFI	GTSAC	2 cut(s)	383, 463
TseI	GCWGC	1 cut(s)	58
Tsp45I	GTSAC	2 cut(s)	383, 463
TspDTI	ATGAA	1 cut(s)	257
TspRI	CASTG	2 cut(s)	21, 388
Vha464I	CTTAAG	1 cut(s)	367
XapI	RAATTY	2 cut(s)	298, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.