Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001689

Physical Location & Seq

Genomic Coordinates Reverse (-)

45448031 .. 45451101

Gene Structure 3071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G556700.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGCAAACTCACTAGCAAGCAAGAATGTTGGCTTATTAAGGTTAGTGGAGGAGAGATCATTGACCAAGAAAATAGAGGAAGAGAAAAAACATAAGCGAGAAAAACAAGTTCCTTATCTCCATAAAGATTGTATCTCAAATATCCTTGTGCGACTTCCTCTTGACTCTCTTCAAAGGTCAAGGTTCGTTTGCAAACCTTGGTATAACATAATTAAAAACCCCAAATTCATTGATGCTCATCTCCATCGCTCTGAATCTGTTTTGATCTTTCTATCACCATTTCCAAATGAAAGTCTATACCCTTTTTCTGTGGCTTCTGTACCAAAAGAGTTGCCAAACACTGTTTCAGTTGAATTAAATCTTCTTCAGCCAAAGCCTATCCCCATTTTCAACCACACAACCATAAACGCTCCAAGGTTTTCTGTCCAGTTTCTGGAATTTAAAAATGATAAGAGCAAGATAGGAGAGTACAGTTTAAGCTGCTCTGGCAATATTAGAGCCACCTGTAACGGTCTAATTCTGCTTGATAACAAATTGAAGAACGGAGGACTAGTAGTCATGAATCCTGTGACTAGGAAGCTGATTGCACTTCCGCTGGGTACTTTATCTCGTCCACATGATGAGTCCTATGGTTTTGCACTGATTGATTCTACTGGTGAATATAAAGTAGTCCACTTGTTTCGGGATGAGTTGAGGTATGTCAGCTGTGAGATTTTGAGTCTTCGGACAAAAGCATGGAGAGAAGTCAATGGTCCTTCGTTTGGGTTCTTTAATAGGTTTGTAGATGGACCTATTTCAGCAATTGGAGGTCTGCACTGGATTCCTCAAGTTGACCGTAGCGAATACATAGTGTCTATTGAAGTCGATAAGGAGAAGTTTCACCAAATTCCACTCCCAAGAAGTAGCAGAACTCATGATAGGATTGTTGACATGGGTGGCGTTTTGTGTCTTATCGTTCATGAGGACGTGAACCATATTGACATTTGGATCTTGAAGGGTTTCTATGGAGAAGTCTGGACGAAGTATCACAGTATCACCGTGGGTTCCATAATAGACATGGTTCCCCTTTTTAGTTTAAGAATCAAGGGTGACATTATTTTCAAGCGAGACGAAGATGGTTCCTTTTATGTTTATGACTTCCAGCATCAAGAGATGAGAAAGGTTGAGATGGTAGAAGGATGTATACCGAGGTCTTCTACAACATACCTGCCTCATGTCAACAGCCTTGTTTCATGGATGGAAGTGAATCTGGACATGTGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

422

Amino Acids

48.29

Weight (kDa)

8.3

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30670 FvH4_5g30670 FvH4_5g30670 FvH4_5g31300
malus_domestica	MD15G1404600.v1.1
prunus_persica	Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1
pyrus_communis	pycom15g36200
rosa_chinensis	RchiOBHm_Chr7g0218801 RchiOBHm_Chr7g0225531 RchiOBHm_Chr7g0226391 RchiOBHm_Chr7g0231221
rosa_laevigata	RLG00000001428 RLG00000001721 RLG00000001808 RLG00000002341
rosa_multiflora	Rmu_sc0003876.1_g000039 Rmu_sc0004426.1_g000001 Rmu_sc0004571.1_g000021 Rmu_sc0012403.1_g000002 Rmu_sc0025113.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229430 Rroxscaffold_3G00233700
rosa_rugosa	Rorug07G0230700 Rorug07G0237000 Rorug07G0265200
rosa_samantha	Rh7AG321300 Rh7AG322200 Rh7AG372900 Rh7AG385100 Rh7AG418400 Rh7BG365200 Rh7BG371000 Rh7BG394100 Rh7CG337800 Rh7CG391100 Rh7CG404500 Rh7CG438200 Rh7DG376000 Rh7DG384200 Rh7DG412400
rosa_wichuraiana	Rw7G031740 Rw7G032190 Rw7G032350 Rw7G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1215
AccB7I	CCANNNNNTGG	1 cut(s)	433
AccI	GTMKAC	1 cut(s)	1183
AciI	CCGC	1 cut(s)	593
AclWI	GGATC	1 cut(s)	995
AcsI	RAATTY	3 cut(s)	224, 437, 885
AcuI	CTGAAG	1 cut(s)	350
AfaI	GTAC	3 cut(s)	321, 470, 601
AfiI	CCNNNNNNNGG	2 cut(s)	433, 761
AflIII	ACRYGT	1 cut(s)	1254
AgsI	TTSAA	7 cut(s)	173, 353, 391, 538, 860, 994, 1102
AhdI	GACNNNNNGTC	1 cut(s)	554
AhlI	ACTAGT	1 cut(s)	550
AjiI	CACGTC	1 cut(s)	967
AjuI	GAANNNNNNNTTGG	2 cut(s)	328, 360
AluBI	AGCT	3 cut(s)	480, 580, 705
AluI	AGCT	3 cut(s)	480, 580, 705
Alw26I	GTCTC	1 cut(s)	1101
AlwI	GGATC	1 cut(s)	995
AlwNI	CAGNNNCTG	1 cut(s)	433
ApeKI	GCWGC	1 cut(s)	480
ApoI	RAATTY	3 cut(s)	224, 437, 885
Asp700I	GAANNNNTTC	1 cut(s)	998
AspS9I	GGNCC	2 cut(s)	752, 788
AsuHPI	GGTGA	5 cut(s)	267, 668, 872, 1027, 1100
AvaII	GGWCC	2 cut(s)	752, 788
BarI	GAAGNNNNNNTAC	2 cut(s)	1167, 1199
BbsI	GAAGAC	2 cut(s)	713, 1185
BbvI	GCAGC	1 cut(s)	467
BccI	CCATC	5 cut(s)	252, 779, 1109, 1162, 1231
BcoDI	GTCTC	1 cut(s)	1101
BcuI	ACTAGT	1 cut(s)	550
BfaI	CTAG	3 cut(s)	14, 551, 573
BfuAI	ACCTGC	1 cut(s)	1215
BisI	GCNGC	1 cut(s)	481
BlsI	GCNGC	1 cut(s)	482
Bme18I	GGWCC	2 cut(s)	752, 788
BmeRI	GACNNNNNGTC	1 cut(s)	554
BmgBI	CACGTC	1 cut(s)	967
BmgT120I	GGNCC	2 cut(s)	752, 788
BmiI	GGNNCC	3 cut(s)	1045, 1062, 1120
BmsI	GCATC	2 cut(s)	223, 1153
BpiI	GAAGAC	2 cut(s)	713, 1185
BpuEI	CTTGAG	1 cut(s)	810
BsaBI	GATNNNNATC	1 cut(s)	237
BsaJI	CCNNGG	4 cut(s)	197, 413, 1038, 1187
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
Bsc4I	CCNNNNNNNGG	2 cut(s)	433, 761
Bse1I	ACTGG	3 cut(s)	427, 658, 821
Bse8I	GATNNNNATC	1 cut(s)	237
BseDI	CCNNGG	4 cut(s)	197, 413, 1038, 1187
BseGI	GGATG	3 cut(s)	691, 1184, 1242
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	2 cut(s)	433, 761
BseNI	ACTGG	3 cut(s)	427, 658, 821
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	467
BseYI	CCCAGC	1 cut(s)	595
BsgI	GTGCAG	1 cut(s)	797
BslI	CCNNNNNNNGG	2 cut(s)	433, 761
BsmAI	GTCTC	1 cut(s)	1101
BsmBI	CGTCTC	1 cut(s)	1101
Bsp143I	GATC	3 cut(s)	56, 264, 987
BspACI	CCGC	1 cut(s)	593
BspHI	TCATGA	3 cut(s)	558, 913, 958
BspLI	GGNNCC	3 cut(s)	1045, 1062, 1120
BspMI	ACCTGC	1 cut(s)	1215
BspPI	GGATC	1 cut(s)	995
BsrI	ACTGG	3 cut(s)	427, 658, 821
BssECI	CCNNGG	4 cut(s)	197, 413, 1038, 1187
BssMI	GATC	3 cut(s)	56, 264, 987
BssNAI	GTATAC	1 cut(s)	1184
BssT1I	CCWWGG	2 cut(s)	197, 413
Bst1107I	GTATAC	1 cut(s)	1184
Bst4CI	ACNGT	6 cut(s)	343, 473, 512, 836, 1031, 1039
Bst6I	CTCTTC	2 cut(s)	75, 174
BstC8I	GCNNGC	1 cut(s)	19
BstDSI	CCRYGG	1 cut(s)	1038
BstF5I	GGATG	3 cut(s)	691, 1184, 1242
BstKTI	GATC	3 cut(s)	59, 267, 990
BstMAI	GTCTC	1 cut(s)	1101
BstMBI	GATC	3 cut(s)	56, 264, 987
BstMWI	GCNNNNNNNGC	1 cut(s)	486
BstNSI	RCATGY	1 cut(s)	1258
BstV1I	GCAGC	1 cut(s)	467
BstV2I	GAAGAC	2 cut(s)	713, 1185
BstX2I	RGATCY	1 cut(s)	987
BstYI	RGATCY	1 cut(s)	987
BstZ17I	GTATAC	1 cut(s)	1184
BtgI	CCRYGG	1 cut(s)	1038
BtgZI	GCGATG	1 cut(s)	230
BtrI	CACGTC	1 cut(s)	967
BtsCI	GGATG	3 cut(s)	691, 1184, 1242
BtsIMutI	CAGTG	3 cut(s)	339, 638, 814
BveI	ACCTGC	1 cut(s)	1215
Cac8I	GCNNGC	1 cut(s)	19
CaiI	CAGNNNCTG	1 cut(s)	433
CciI	TCATGA	3 cut(s)	558, 913, 958
Cfr13I	GGNCC	2 cut(s)	752, 788
Csp6I	GTAC	3 cut(s)	320, 469, 600
CviJI	RGCY	9 cut(s)	33, 314, 370, 376, 480, 500, 580, 705, 1224
CviKI_1	RGCY	9 cut(s)	33, 314, 370, 376, 480, 500, 580, 705, 1224
CviQI	GTAC	3 cut(s)	320, 469, 600
DpnI	GATC	3 cut(s)	58, 266, 989
DpnII	GATC	3 cut(s)	56, 264, 987
DraI	TTTAAA	1 cut(s)	442
DriI	GACNNNNNGTC	1 cut(s)	554
Eam1104I	CTCTTC	2 cut(s)	75, 174
Eam1105I	GACNNNNNGTC	1 cut(s)	554
EarI	CTCTTC	2 cut(s)	75, 174
Eco130I	CCWWGG	2 cut(s)	197, 413
Eco47I	GGWCC	2 cut(s)	752, 788
Eco57I	CTGAAG	1 cut(s)	350
EcoT14I	CCWWGG	2 cut(s)	197, 413
ErhI	CCWWGG	2 cut(s)	197, 413
Esp3I	CGTCTC	1 cut(s)	1101
FblI	GTMKAC	1 cut(s)	1183
Fnu4HI	GCNGC	1 cut(s)	481
FokI	GGATG	3 cut(s)	698, 1191, 1249
Fsp4HI	GCNGC	1 cut(s)	481
FspBI	CTAG	3 cut(s)	14, 551, 573
GluI	GCNGC	1 cut(s)	481
GsaI	CCCAGC	1 cut(s)	599
HincII	GTYRAC	3 cut(s)	832, 928, 1219
HindII	GTYRAC	3 cut(s)	832, 928, 1219
HinfI	GANTC	9 cut(s)	164, 254, 562, 623, 647, 718, 820, 1080, 1246
HphI	GGTGA	5 cut(s)	267, 668, 872, 1027, 1100
Hpy166II	GTNNAC	7 cut(s)	614, 673, 832, 928, 970, 1184, 1219
Hpy188I	TCNGA	2 cut(s)	253, 726
Hpy8I	GTNNAC	7 cut(s)	614, 673, 832, 928, 970, 1184, 1219
HpyAV	CCTTC	3 cut(s)	765, 988, 1169
HpyCH4III	ACNGT	6 cut(s)	343, 473, 512, 836, 1031, 1039
HpyCH4IV	ACGT	1 cut(s)	966
HpyCH4V	TGCA	4 cut(s)	192, 587, 638, 814
HpyF10VI	GCNNNNNNNGC	1 cut(s)	486
HpySE526I	ACGT	1 cut(s)	966
Kzo9I	GATC	3 cut(s)	56, 264, 987
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	1 cut(s)	467
LweI	GCATC	2 cut(s)	223, 1153
MaeI	CTAG	3 cut(s)	14, 551, 573
MaeII	ACGT	1 cut(s)	966
MaeIII	GTNAC	3 cut(s)	506, 568, 1088
MalI	GATC	3 cut(s)	58, 266, 989
MboI	GATC	3 cut(s)	56, 264, 987
MboII	GAAGA	8 cut(s)	92, 161, 353, 356, 550, 713, 1124, 1185
MfeI	CAATTG	1 cut(s)	801
MflI	RGATCY	1 cut(s)	987
MluCI	AATT	8 cut(s)	210, 224, 353, 437, 516, 533, 801, 885
MlyI	GAGTC	3 cut(s)	158, 632, 727
MroXI	GAANNNNTTC	1 cut(s)	998
MseI	TTAA	7 cut(s)	38, 213, 356, 441, 476, 771, 1076
MspA1I	CMGCKG	2 cut(s)	595, 705
MunI	CAATTG	1 cut(s)	801
MwoI	GCNNNNNNNGC	1 cut(s)	486
NdeII	GATC	3 cut(s)	56, 264, 987
NlaIV	GGNNCC	3 cut(s)	1045, 1062, 1120
NmuCI	GTSAC	2 cut(s)	568, 1088
NspI	RCATGY	1 cut(s)	1258
PagI	TCATGA	3 cut(s)	558, 913, 958
PciI	ACATGT	1 cut(s)	1254
PdmI	GAANNNNTTC	1 cut(s)	998
PfeI	GAWTC	6 cut(s)	254, 562, 647, 820, 1080, 1246
PflMI	CCANNNNNTGG	1 cut(s)	433
PkrI	GCNGC	1 cut(s)	482
PleI	GAGTC	3 cut(s)	158, 631, 726
PpsI	GAGTC	3 cut(s)	158, 631, 726
PscI	ACATGT	1 cut(s)	1254
PspFI	CCCAGC	1 cut(s)	595
PspN4I	GGNNCC	3 cut(s)	1045, 1062, 1120
PspPI	GGNCC	2 cut(s)	752, 788
PstNI	CAGNNNCTG	1 cut(s)	433
PsuI	RGATCY	1 cut(s)	987
PvuII	CAGCTG	1 cut(s)	705
RsaI	GTAC	3 cut(s)	321, 470, 601
RsaNI	GTAC	3 cut(s)	320, 469, 600
SaqAI	TTAA	7 cut(s)	38, 213, 356, 441, 476, 771, 1076
SatI	GCNGC	1 cut(s)	481
Sau3AI	GATC	3 cut(s)	56, 264, 987
Sau96I	GGNCC	2 cut(s)	752, 788
SchI	GAGTC	3 cut(s)	158, 632, 727
SfaNI	GCATC	2 cut(s)	223, 1153
SinI	GGWCC	2 cut(s)	752, 788
SmlI	CTYRAG	1 cut(s)	825
SmoI	CTYRAG	1 cut(s)	825
SpeI	ACTAGT	1 cut(s)	550
Sse9I	AATT	8 cut(s)	210, 224, 353, 437, 516, 533, 801, 885
SsiI	CCGC	1 cut(s)	593
SspI	AATATT	1 cut(s)	493
SspMI	CTAG	3 cut(s)	14, 551, 573
StyI	CCWWGG	2 cut(s)	197, 413
TaaI	ACNGT	6 cut(s)	343, 473, 512, 836, 1031, 1039
TaiI	ACGT	1 cut(s)	969
TaqI	TCGA	1 cut(s)	864
TasI	AATT	8 cut(s)	210, 224, 353, 437, 516, 533, 801, 885
TatI	WGTACW	1 cut(s)	468
TfiI	GAWTC	6 cut(s)	254, 562, 647, 820, 1080, 1246
Tru1I	TTAA	7 cut(s)	38, 213, 356, 441, 476, 771, 1076
Tru9I	TTAA	7 cut(s)	38, 213, 356, 441, 476, 771, 1076
TscAI	CASTG	3 cut(s)	346, 645, 821
TseFI	GTSAC	2 cut(s)	568, 1088
TseI	GCWGC	1 cut(s)	480
Tsp45I	GTSAC	2 cut(s)	568, 1088
TspDTI	ATGAA	5 cut(s)	217, 303, 575, 947, 1221
TspGWI	ACGGA	1 cut(s)	558
TspRI	CASTG	3 cut(s)	346, 645, 821
Van91I	CCANNNNNTGG	1 cut(s)	433
VpaK11BI	GGWCC	2 cut(s)	752, 788
XapI	RAATTY	3 cut(s)	224, 437, 885
XceI	RCATGY	1 cut(s)	1258
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1054
XmiI	GTMKAC	1 cut(s)	1183
XmnI	GAANNNNTTC	1 cut(s)	998
XspI	CTAG	3 cut(s)	14, 551, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.