Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001689

Physical Location & Seq

Genomic Coordinates Forward (+)

46540225 .. 46541463

Gene Structure 1239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G032190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGTGACAAGCAGCAAGAGTTCAGGCCTATTAAAGTTAGTGGAGGAGAGGTTATTGACGAAGAAAATAGAGGAAGAGAAAAAGCTAGCACAGATTTCATACATCCCCAAGGACTGTATCTCAAACATCCTTGCACGACTTCCTGTTGACTCTATTCAAAGGTCAAGGTTTGTTTGCAAACCATGGTATGATGTAGTTAGAGACCCCAAATTCATCGATGCTCATCTCCAAAGTTCTGAATCTGTTTTGATCTTCTTATCACCAATTGCAAAGGAATCTAAGAAGACACAAGTGGGAGAAAATGGAAGGGCATCTACCCTACAAAAGAAGGGAAACACAGTTCCAGTTGAATCAAAGCTTCTTGACCCAGACAGTATCCCCATGTTTGGTCACCCAGCCTTAAATTCTCCAAAGAATTGTGTCAAGTTTCTGGAATTTAAAAATGGTAAGAGTGGCATAGGAGAGTACAGCTTAAGCTGCTGGGCCAGTGACATCAAAGCCACCTGCAATGGTCTAATATTGCTTGACAACAATTTGAAGAAGGGAGGAGTAATAGTCTTGAATCCTGTGACTAAGAAGTTGATTGCACTTCCTGTGGGTACCTTGTGTAACCATCCACATGAAGAATCATATGGATTTGCATTGAGTGATTTAACTGGTGAGTATAAAGTAGTCCACTTGTTTTTGGATCAGTTGGGGTTTGCTTTCTGTGAGATATTTAGCCTCTATAAAAAAACATGGCGAGAGGTCAATGGTCCTTCAATCGAGCTCGTTGATAATGGAGGGTTTGGACATGTACCTGTTTCAGCAATCGGAGCTTTGCACTGGCCTTTTTATCGAAGCGATTACGTAGTGTCCATGGAAGTTGAAGAGGAGAAGTTTCACCATATAGATCTCCCCAAAAGTTGCACAACTCATGATAGGATTATTGAAATTTGTGGCTGTTTAGGTTTTATCACTCAAGAGGACATGAACCACATTGACATTTGGATCTTGACGAGTTTATGTGGGGAAGAGTGGACAAAGAATCATAGCATCACAGTGGATACCACAAGAGACATGGTTCCCCTTTGCAGTTTAAGATTCAAGGGAGATATTATTTTCCATACAAGCGACGGCTCTTTCTATGCTTATGACTTCCAACAGCAACAGATGACAGAGATTATTGGTAAGATTAATAGACTACCATGGTGCCTGCCTCATGTCAATAGCCTTGTTACTTGGGATGCAAGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

412

Amino Acids

46.41

Weight (kDa)

6.28

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	33 - 71	7.4e-08	F-box domain
FBA_3	PF08268	162 - 369	1.2e-16	F-box associated beta propeller domain
FBA_1	PF07734	168 - 365	5.3e-09	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30670 FvH4_5g30670 FvH4_5g30670 FvH4_5g31300
malus_domestica	MD15G1404600.v1.1
prunus_persica	Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1
pyrus_communis	pycom15g36200
rosa_chinensis	RchiOBHm_Chr7g0218801 RchiOBHm_Chr7g0225531 RchiOBHm_Chr7g0226391 RchiOBHm_Chr7g0231221
rosa_laevigata	RLG00000001428 RLG00000001721 RLG00000001808 RLG00000002341
rosa_multiflora	Rmu_sc0003876.1_g000039 Rmu_sc0004426.1_g000001 Rmu_sc0004571.1_g000021 Rmu_sc0012403.1_g000002 Rmu_sc0025113.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229430 Rroxscaffold_3G00233700
rosa_rugosa	Rorug07G0230700 Rorug07G0237000 Rorug07G0265200
rosa_samantha	Rh7AG321300 Rh7AG322200 Rh7AG372900 Rh7AG385100 Rh7AG418400 Rh7BG365200 Rh7BG371000 Rh7BG394100 Rh7CG337800 Rh7CG391100 Rh7CG404500 Rh7CG438200 Rh7DG376000 Rh7DG384200 Rh7DG412400
rosa_wichuraiana	Rw7G031740 Rw7G032190 Rw7G032350 Rw7G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	512
Acc36I	ACCTGC	1 cut(s)	512
Acc65I	GGTACC	1 cut(s)	599
AccB1I	GGYRCC	2 cut(s)	599, 1191
AclWI	GGATC	2 cut(s)	696, 998
AcsI	RAATTY	4 cut(s)	209, 403, 434, 933
AfaI	GTAC	3 cut(s)	467, 601, 798
AfiI	CCNNNNNNNGG	1 cut(s)	386
AflII	CTTAAG	1 cut(s)	472
AflIII	ACRYGT	1 cut(s)	793
AgsI	TTSAA	8 cut(s)	158, 350, 538, 562, 762, 869, 932, 1087
AloI	GAACNNNNNNTCC	2 cut(s)	324, 356
AluBI	AGCT	6 cut(s)	85, 358, 471, 477, 769, 818
AluI	AGCT	6 cut(s)	85, 358, 471, 477, 769, 818
Alw21I	GWGCWC	1 cut(s)	771
Alw26I	GTCTC	2 cut(s)	195, 1050
AlwI	GGATC	2 cut(s)	696, 998
AoxI	GGCC	3 cut(s)	25, 483, 827
ApeKI	GCWGC	2 cut(s)	12, 477
ApoI	RAATTY	4 cut(s)	209, 403, 434, 933
AseI	ATTAAT	1 cut(s)	1176
Asp718I	GGTACC	1 cut(s)	599
AspS9I	GGNCC	2 cut(s)	483, 755
AsuHPI	GGTGA	5 cut(s)	16, 252, 383, 671, 875
AsuNHI	GCTAGC	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	755
BanI	GGYRCC	2 cut(s)	599, 1191
BanII	GRGCYC	1 cut(s)	771
BarI	GAAGNNNNNNTAC	2 cut(s)	298, 330
BbsI	GAAGAC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	771
BbvI	GCAGC	2 cut(s)	24, 464
BccI	CCATC	1 cut(s)	621
BceAI	ACGGC	1 cut(s)	1132
BciVI	GTATCC	2 cut(s)	386, 1039
BcoDI	GTCTC	2 cut(s)	195, 1050
BfaI	CTAG	1 cut(s)	86
BfrI	CTTAAG	1 cut(s)	472
BfuAI	ACCTGC	1 cut(s)	512
BfuI	GTATCC	2 cut(s)	386, 1039
BglII	AGATCT	1 cut(s)	892
BisI	GCNGC	2 cut(s)	13, 478
BlsI	GCNGC	2 cut(s)	14, 479
Bme18I	GGWCC	1 cut(s)	755
BmgT120I	GGNCC	2 cut(s)	483, 755
BmiI	GGNNCC	3 cut(s)	601, 1065, 1193
BmsI	GCATC	4 cut(s)	208, 320, 1044, 1216
BmtI	GCTAGC	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	945
Bsa29I	ATCGAT	1 cut(s)	216
BsaAI	YACGTR	1 cut(s)	850
BsaBI	GATNNNNATC	1 cut(s)	222
BsaI	GGTCTC	1 cut(s)	195
BsaJI	CCNNGG	4 cut(s)	108, 182, 858, 1187
BsaXI	ACNNNNNCTCC	4 cut(s)	35, 65, 540, 570
Bsc4I	CCNNNNNNNGG	1 cut(s)	386
Bse1I	ACTGG	4 cut(s)	344, 486, 661, 830
Bse3DI	GCAATG	1 cut(s)	514
Bse8I	GATNNNNATC	1 cut(s)	222
BseCI	ATCGAT	1 cut(s)	216
BseDI	CCNNGG	4 cut(s)	108, 182, 858, 1187
BseGI	GGATG	4 cut(s)	102, 126, 613, 1231
BseJI	GATNNNNATC	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	386
BseMI	GCAATG	1 cut(s)	514
BseNI	ACTGG	4 cut(s)	344, 486, 661, 830
BseRI	GAGGAG	3 cut(s)	59, 561, 887
BseXI	GCAGC	2 cut(s)	24, 464
BseYI	CCCAGC	2 cut(s)	394, 480
BshFI	GGCC	3 cut(s)	27, 485, 829
BshNI	GGYRCC	2 cut(s)	599, 1191
BshVI	ATCGAT	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	771
BslI	CCNNNNNNNGG	1 cut(s)	386
BsmAI	GTCTC	2 cut(s)	195, 1050
BsnI	GGCC	3 cut(s)	27, 485, 829
Bso31I	GGTCTC	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	771
Bsp143I	GATC	4 cut(s)	249, 688, 892, 990
Bsp19I	CCATGG	3 cut(s)	182, 858, 1187
BspANI	GGCC	3 cut(s)	27, 485, 829
BspDI	ATCGAT	1 cut(s)	216
BspHI	TCATGA	1 cut(s)	916
BspLI	GGNNCC	3 cut(s)	601, 1065, 1193
BspMI	ACCTGC	1 cut(s)	512
BspOI	GCTAGC	1 cut(s)	89
BspPI	GGATC	2 cut(s)	696, 998
BspT107I	GGYRCC	2 cut(s)	599, 1191
BspTI	CTTAAG	1 cut(s)	472
BspTNI	GGTCTC	1 cut(s)	195
BsrDI	GCAATG	1 cut(s)	514
BsrI	ACTGG	4 cut(s)	344, 486, 661, 830
BssECI	CCNNGG	4 cut(s)	108, 182, 858, 1187
BssMI	GATC	4 cut(s)	249, 688, 892, 990
BssT1I	CCWWGG	4 cut(s)	108, 182, 858, 1187
Bst4CI	ACNGT	4 cut(s)	116, 340, 374, 1042
Bst6I	CTCTTC	3 cut(s)	69, 864, 1008
BstAFI	CTTAAG	1 cut(s)	472
BstBAI	YACGTR	1 cut(s)	850
BstC8I	GCNNGC	2 cut(s)	87, 1196
BstDEI	CTNAG	2 cut(s)	279, 573
BstDSI	CCRYGG	3 cut(s)	182, 858, 1187
BstEII	GGTNACC	1 cut(s)	389
BstF5I	GGATG	4 cut(s)	102, 126, 613, 1231
BstKTI	GATC	4 cut(s)	252, 691, 895, 993
BstMAI	GTCTC	2 cut(s)	195, 1050
BstMBI	GATC	4 cut(s)	249, 688, 892, 990
BstMWI	GCNNNNNNNGC	2 cut(s)	477, 815
BstNSI	RCATGY	1 cut(s)	797
BstPI	GGTNACC	1 cut(s)	389
BstSNI	TACGTA	1 cut(s)	850
BstV1I	GCAGC	2 cut(s)	24, 464
BstV2I	GAAGAC	1 cut(s)	290
BstX2I	RGATCY	2 cut(s)	892, 990
BstYI	RGATCY	2 cut(s)	892, 990
Bsu15I	ATCGAT	1 cut(s)	216
BsuI	GTATCC	2 cut(s)	386, 1039
BsuRI	GGCC	3 cut(s)	27, 485, 829
BsuTUI	ATCGAT	1 cut(s)	216
BtgI	CCRYGG	3 cut(s)	182, 858, 1187
BtsCI	GGATG	4 cut(s)	102, 126, 613, 1231
BtsIMutI	CAGTG	3 cut(s)	493, 823, 1047
BveI	ACCTGC	1 cut(s)	512
Cac8I	GCNNGC	2 cut(s)	87, 1196
CciI	TCATGA	1 cut(s)	916
Cfr13I	GGNCC	2 cut(s)	483, 755
ClaI	ATCGAT	1 cut(s)	216
Csp6I	GTAC	3 cut(s)	466, 600, 797
CviQI	GTAC	3 cut(s)	466, 600, 797
DdeI	CTNAG	2 cut(s)	279, 573
DpnI	GATC	4 cut(s)	251, 690, 894, 992
DpnII	GATC	4 cut(s)	249, 688, 892, 990
DraI	TTTAAA	1 cut(s)	439
Eam1104I	CTCTTC	3 cut(s)	69, 864, 1008
EarI	CTCTTC	3 cut(s)	69, 864, 1008
Ecl136II	GAGCTC	1 cut(s)	769
Eco105I	TACGTA	1 cut(s)	850
Eco130I	CCWWGG	4 cut(s)	108, 182, 858, 1187
Eco147I	AGGCCT	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	771
Eco31I	GGTCTC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	755
Eco53kI	GAGCTC	1 cut(s)	769
Eco91I	GGTNACC	1 cut(s)	389
EcoICRI	GAGCTC	1 cut(s)	769
EcoO65I	GGTNACC	1 cut(s)	389
EcoT14I	CCWWGG	4 cut(s)	108, 182, 858, 1187
EcoT38I	GRGCYC	1 cut(s)	771
ErhI	CCWWGG	4 cut(s)	108, 182, 858, 1187
FauNDI	CATATG	1 cut(s)	631
Fnu4HI	GCNGC	2 cut(s)	13, 478
FokI	GGATG	3 cut(s)	89, 113, 600
FriOI	GRGCYC	1 cut(s)	771
Fsp4HI	GCNGC	2 cut(s)	13, 478
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	2 cut(s)	13, 478
GsaI	CCCAGC	2 cut(s)	398, 484
HaeIII	GGCC	3 cut(s)	27, 485, 829
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	8 cut(s)	149, 239, 275, 350, 562, 626, 1027, 1083
HphI	GGTGA	5 cut(s)	16, 252, 383, 671, 875
Hpy166II	GTNNAC	3 cut(s)	148, 676, 1020
Hpy188I	TCNGA	2 cut(s)	238, 815
Hpy188III	TCNNGA	6 cut(s)	362, 431, 559, 917, 962, 994
Hpy8I	GTNNAC	3 cut(s)	148, 676, 1020
Hpy99I	CGWCG	1 cut(s)	1118
HpyAV	CCTTC	4 cut(s)	300, 322, 535, 768
HpyCH4III	ACNGT	4 cut(s)	116, 340, 374, 1042
HpyCH4IV	ACGT	1 cut(s)	849
HpyF10VI	GCNNNNNNNGC	2 cut(s)	477, 815
HpyF3I	CTNAG	2 cut(s)	279, 573
HpySE526I	ACGT	1 cut(s)	849
KpnI	GGTACC	1 cut(s)	603
Kzo9I	GATC	4 cut(s)	249, 688, 892, 990
LmnI	GCTCC	1 cut(s)	815
Lsp1109I	GCAGC	2 cut(s)	24, 464
LweI	GCATC	4 cut(s)	208, 320, 1044, 1216
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	1 cut(s)	849
MaeIII	GTNAC	6 cut(s)	4, 389, 488, 568, 608, 1216
MalI	GATC	4 cut(s)	251, 690, 894, 992
MboI	GATC	4 cut(s)	249, 688, 892, 990
MboII	GAAGA	8 cut(s)	73, 86, 244, 295, 550, 635, 881, 1025
MfeI	CAATTG	1 cut(s)	264
MflI	RGATCY	2 cut(s)	892, 990
MhlI	GDGCHC	1 cut(s)	771
MluCI	AATT	7 cut(s)	209, 264, 403, 415, 434, 532, 933
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	1165
MseI	TTAA	7 cut(s)	32, 401, 438, 473, 653, 1079, 1176
MslI	CAYNNNNRTG	2 cut(s)	618, 1040
MspCI	CTTAAG	1 cut(s)	472
MunI	CAATTG	1 cut(s)	264
MwoI	GCNNNNNNNGC	2 cut(s)	477, 815
NcoI	CCATGG	3 cut(s)	182, 858, 1187
NdeI	CATATG	1 cut(s)	631
NdeII	GATC	4 cut(s)	249, 688, 892, 990
NheI	GCTAGC	1 cut(s)	85
NlaIV	GGNNCC	3 cut(s)	601, 1065, 1193
NmuCI	GTSAC	4 cut(s)	4, 389, 488, 568
NspI	RCATGY	1 cut(s)	797
PagI	TCATGA	1 cut(s)	916
PaqCI	CACCTGC	1 cut(s)	512
PceI	AGGCCT	1 cut(s)	27
PciI	ACATGT	1 cut(s)	793
PfeI	GAWTC	7 cut(s)	239, 275, 350, 562, 626, 1027, 1083
PkrI	GCNGC	2 cut(s)	14, 479
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Ppu21I	YACGTR	1 cut(s)	850
PscI	ACATGT	1 cut(s)	793
PshBI	ATTAAT	1 cut(s)	1176
Psp124BI	GAGCTC	1 cut(s)	771
PspEI	GGTNACC	1 cut(s)	389
PspFI	CCCAGC	2 cut(s)	394, 480
PspN4I	GGNNCC	3 cut(s)	601, 1065, 1193
PspPI	GGNCC	2 cut(s)	483, 755
PsuI	RGATCY	2 cut(s)	892, 990
RsaI	GTAC	3 cut(s)	467, 601, 798
RsaNI	GTAC	3 cut(s)	466, 600, 797
RseI	CAYNNNNRTG	2 cut(s)	618, 1040
SacI	GAGCTC	1 cut(s)	771
SaqAI	TTAA	7 cut(s)	32, 401, 438, 473, 653, 1079, 1176
SatI	GCNGC	2 cut(s)	13, 478
Sau3AI	GATC	4 cut(s)	249, 688, 892, 990
Sau96I	GGNCC	2 cut(s)	483, 755
SchI	GAGTC	1 cut(s)	143
SduI	GDGCHC	1 cut(s)	771
SfaNI	GCATC	4 cut(s)	208, 320, 1044, 1216
SinI	GGWCC	1 cut(s)	755
SmiMI	CAYNNNNRTG	2 cut(s)	618, 1040
SmlI	CTYRAG	2 cut(s)	472, 960
SmoI	CTYRAG	2 cut(s)	472, 960
SnaBI	TACGTA	1 cut(s)	850
Sse9I	AATT	7 cut(s)	209, 264, 403, 415, 434, 532, 933
SseBI	AGGCCT	1 cut(s)	27
SspI	AATATT	1 cut(s)	519
SspMI	CTAG	1 cut(s)	86
SstI	GAGCTC	1 cut(s)	771
StuI	AGGCCT	1 cut(s)	27
StyI	CCWWGG	4 cut(s)	108, 182, 858, 1187
TaaI	ACNGT	4 cut(s)	116, 340, 374, 1042
TaiI	ACGT	1 cut(s)	852
TaqI	TCGA	3 cut(s)	216, 765, 838
TasI	AATT	7 cut(s)	209, 264, 403, 415, 434, 532, 933
TatI	WGTACW	1 cut(s)	465
TfiI	GAWTC	7 cut(s)	239, 275, 350, 562, 626, 1027, 1083
Tru1I	TTAA	7 cut(s)	32, 401, 438, 473, 653, 1079, 1176
Tru9I	TTAA	7 cut(s)	32, 401, 438, 473, 653, 1079, 1176
TscAI	CASTG	3 cut(s)	493, 830, 1047
TseFI	GTSAC	4 cut(s)	4, 389, 488, 568
TseI	GCWGC	2 cut(s)	12, 477
Tsp45I	GTSAC	4 cut(s)	4, 389, 488, 568
TspDTI	ATGAA	4 cut(s)	87, 202, 636, 986
TspRI	CASTG	3 cut(s)	493, 830, 1047
Vha464I	CTTAAG	1 cut(s)	472
VpaK11BI	GGWCC	1 cut(s)	755
VspI	ATTAAT	1 cut(s)	1176
XapI	RAATTY	4 cut(s)	209, 403, 434, 933
XceI	RCATGY	1 cut(s)	797
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1057
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.