Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001689

Physical Location & Seq

Genomic Coordinates Forward (+)

37031320 .. 37032794

Gene Structure 1475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19587

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCATCTAACCTACAGGCGAAGCAAAACAAAATTCCAGTTGAATCAAAACTTTTTGACCCAAACATTATCCCCATTTTTGGTCACCCAGCCTTAAATTCTCCAAAAAAATTTGTTCAGTTTCTGGAATTTAAAAATGGTAAGAGTGACATAGGAGAATACTGTTTAAGTTGCTTGGGCAATAATATTAGAGCCACCTGGAATGGTCTAATATTGCTTGACAACAAATTGAAGAAGGGAGGAGTCAAAGTCTTGAATCCTGTGACTAGGAAGGTGATTGCACTTCCTGTGGGTACCTTGTGTCGTCTTCCACATCAAGAATCATATGGTTTCGCACTGAGTGATGTAATTGGTGAGTATAAAGTAGTCCACTTGTTTCTGGATCAGTTGGGGTTGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

133

Amino Acids

14.73

Weight (kDa)

9.35

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30670 FvH4_5g30670 FvH4_5g30670 FvH4_5g31300
malus_domestica	MD15G1404600.v1.1
prunus_persica	Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1
pyrus_communis	pycom15g36200
rosa_chinensis	RchiOBHm_Chr7g0218801 RchiOBHm_Chr7g0225531 RchiOBHm_Chr7g0226391 RchiOBHm_Chr7g0231221
rosa_laevigata	RLG00000001428 RLG00000001721 RLG00000001808 RLG00000002341
rosa_multiflora	Rmu_sc0003876.1_g000039 Rmu_sc0004426.1_g000001 Rmu_sc0004571.1_g000021 Rmu_sc0012403.1_g000002 Rmu_sc0025113.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229430 Rroxscaffold_3G00233700
rosa_rugosa	Rorug07G0230700 Rorug07G0237000 Rorug07G0265200
rosa_samantha	Rh7AG321300 Rh7AG322200 Rh7AG372900 Rh7AG385100 Rh7AG418400 Rh7BG365200 Rh7BG371000 Rh7BG394100 Rh7CG337800 Rh7CG391100 Rh7CG404500 Rh7CG438200 Rh7DG376000 Rh7DG384200 Rh7DG412400
rosa_wichuraiana	Rw7G031740 Rw7G032190 Rw7G032350 Rw7G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	293
AccB1I	GGYRCC	1 cut(s)	293
AclWI	GGATC	1 cut(s)	390
AcsI	RAATTY	4 cut(s)	33, 97, 110, 128
AdeI	CACNNNGTG	1 cut(s)	341
AfaI	GTAC	1 cut(s)	295
AfiI	CCNNNNNNNGG	1 cut(s)	80
AgsI	TTSAA	3 cut(s)	44, 232, 256
AjnI	CCWGG	1 cut(s)	197
AlwI	GGATC	1 cut(s)	390
AlwNI	CAGNNNCTG	1 cut(s)	124
ApoI	RAATTY	4 cut(s)	33, 97, 110, 128
Asp718I	GGTACC	1 cut(s)	293
AsuHPI	GGTGA	3 cut(s)	77, 286, 365
BanI	GGYRCC	1 cut(s)	293
BbsI	GAAGAC	1 cut(s)	299
BciT130I	CCWGG	1 cut(s)	199
BfaI	CTAG	1 cut(s)	267
BfmI	CTRYAG	1 cut(s)	14
Bme1390I	CCNGG	1 cut(s)	199
BmiI	GGNNCC	1 cut(s)	295
BmrFI	CCNGG	1 cut(s)	199
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	299
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	38
BseBI	CCWGG	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMII	CTCAG	1 cut(s)	329
BseNI	ACTGG	1 cut(s)	38
BseRI	GAGGAG	1 cut(s)	255
BseYI	CCCAGC	1 cut(s)	88
BshNI	GGYRCC	1 cut(s)	293
BslI	CCNNNNNNNGG	1 cut(s)	80
Bsp143I	GATC	1 cut(s)	382
BspCNI	CTCAG	1 cut(s)	330
BspLI	GGNNCC	1 cut(s)	295
BspPI	GGATC	1 cut(s)	390
BspT107I	GGYRCC	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	38
BssMI	GATC	1 cut(s)	382
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	164
BstDEI	CTNAG	1 cut(s)	338
BstEII	GGTNACC	1 cut(s)	83
BstKTI	GATC	1 cut(s)	385
BstMBI	GATC	1 cut(s)	382
BstNI	CCWGG	1 cut(s)	199
BstPI	GGTNACC	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	197
BstSFI	CTRYAG	1 cut(s)	14
BstV2I	GAAGAC	1 cut(s)	299
BtsIMutI	CAGTG	1 cut(s)	335
CaiI	CAGNNNCTG	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	294
CviJI	RGCY	2 cut(s)	92, 194
CviKI_1	RGCY	2 cut(s)	92, 194
CviQI	GTAC	1 cut(s)	294
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	1 cut(s)	384
DpnII	GATC	1 cut(s)	382
DraI	TTTAAA	1 cut(s)	133
DraIII	CACNNNGTG	1 cut(s)	341
Eco91I	GGTNACC	1 cut(s)	83
EcoO65I	GGTNACC	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	197
FaiI	YATR	4 cut(s)	152, 325, 327, 360
FauNDI	CATATG	1 cut(s)	325
FspBI	CTAG	1 cut(s)	267
GsaI	CCCAGC	1 cut(s)	92
HinfI	GANTC	4 cut(s)	44, 243, 256, 320
HphI	GGTGA	3 cut(s)	77, 286, 365
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188III	TCNNGA	4 cut(s)	125, 253, 317, 380
Hpy8I	GTNNAC	1 cut(s)	370
HpyAV	CCTTC	2 cut(s)	229, 265
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4V	TGCA	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	338
KpnI	GGTACC	1 cut(s)	297
Kzo9I	GATC	1 cut(s)	382
LpnPI	CCDG	9 cut(s)	2, 51, 102, 110, 184, 211, 273, 300, 365
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	267
MaeIII	GTNAC	3 cut(s)	83, 146, 262
MalI	GATC	1 cut(s)	384
MboI	GATC	1 cut(s)	382
MboII	GAAGA	2 cut(s)	244, 299
MluCI	AATT	6 cut(s)	33, 97, 110, 128, 227, 348
MlyI	GAGTC	1 cut(s)	252
MnlI	CCTC	1 cut(s)	233
MseI	TTAA	3 cut(s)	95, 132, 167
MspR9I	CCNGG	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	199
NdeI	CATATG	1 cut(s)	325
NdeII	GATC	1 cut(s)	382
NlaIV	GGNNCC	1 cut(s)	295
NmuCI	GTSAC	3 cut(s)	83, 146, 262
PfeI	GAWTC	3 cut(s)	44, 256, 320
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	197
PspEI	GGTNACC	1 cut(s)	83
PspFI	CCCAGC	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	124
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
SaqAI	TTAA	3 cut(s)	95, 132, 167
Sau3AI	GATC	1 cut(s)	382
SchI	GAGTC	1 cut(s)	252
ScrFI	CCNGG	1 cut(s)	199
SetI	ASST	4 cut(s)	15, 200, 276, 299
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	14
Sse9I	AATT	6 cut(s)	33, 97, 110, 128, 227, 348
SspI	AATATT	2 cut(s)	187, 213
SspMI	CTAG	1 cut(s)	267
StyD4I	CCNGG	1 cut(s)	197
TaaI	ACNGT	1 cut(s)	164
TasI	AATT	6 cut(s)	33, 97, 110, 128, 227, 348
TfiI	GAWTC	3 cut(s)	44, 256, 320
Tru1I	TTAA	3 cut(s)	95, 132, 167
Tru9I	TTAA	3 cut(s)	95, 132, 167
TscAI	CASTG	1 cut(s)	342
TseFI	GTSAC	3 cut(s)	83, 146, 262
Tsp45I	GTSAC	3 cut(s)	83, 146, 262
TspRI	CASTG	1 cut(s)	342
XapI	RAATTY	4 cut(s)	33, 97, 110, 128
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.