Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001689

Physical Location & Seq

Genomic Coordinates Reverse (-)

22208582 .. 22213505

Gene Structure 4924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g31300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGATGACAAAATCATTAGGTAGCAAGAATGGAGGCCTATTGAGGCTAGTGGAGGAAAGATCATTGAGCAAGAAAACAGAGGAAGAGAAAAAACACCCACAAGAAACACATATCCCTTATCTCCCTAAAGATTGTATATCAAGCATCCTTGTACGACTTCCTGTTGAATCTCTTCAGAGGTCAAGTTTTGTGTGCAAGCCTTGGTATAGCATGATTAAAAATCCCAAATTCATCGATGCTCATCTCAAGCGATCTGAATCTGTTTTAATTTTTCTATTGCCAATAAGGAAAGGAAGACCATATTCTTCTTCCATGGCATCTGCTCCAGAAGAGAATCCAAACACTTTCTCAGTTGAATCAAAGCTTCTACCGTCAAATTGTATCCCCACTTTCAGTAACTCGGCCCTAAACTCTACAAAATTTTTAGTTCAGTTTCTTGCAATTAAAAATGGCAAGGCGGAGATAGGAGGGTATGGTTTAAGTTGCTTGGGTAATATCAGAGCTACCTGCAATGGTTTAATTTTGCTTGATAACAAAGTTAAGAAGGGAGGACTGATAGTCTTGAATCCTGTGACCAGGAAGCTGATTGCACTTCCTCTGGGTACCTTACAACCTCCATATAATGAATCCTATGGTTTTGCATTGAGTGATGTCACCGGTGAATATAAAATAGTCCATTTGTTTCGGGATGAGTTGGGGTTTGTCAGCTGTGAGATTTTGAGTCTTCGGAAAAAAGCATGGAGAGAGGTTAATGGTCCTGCATTTGGGCTCTTTGGTTGGTTCGGATATGAACCTGTTTCAGCAATTGGAGCTTTGCACTGGATTCCTCAGGTTGATCAGAGCGATTACATTGTTTCTGTGGAAGTCCACAAGGAGAGATTTCACCAAATACCGCTCCCCAAAAGTTGCAGAACTCATGACAGGATTATTGAAATGGGAGGCGCATTGGGTTTTGTCACTCATGAGGATATAAACCGCATTGACATCTGGATTTTGAAGGGTTTCTGTGGGGAAATCTGGACAAAGAATCACAGCATTACAGTGGGTTCCATTATAGACATGATTCCTTATTTCAGTTTAAGGATCAAGGGAGATATTATTTTCAAGAGAGACGAAGAAGGCACGCTATATTCTTATGACTTTCAGCAACAAGACTTGTCTAAGGTTGAAATGGTAAAGGGATGTATGCCAACTTCATGCCTACCTCATGTCAATAGCCTTGTATCATGGATCGATGAAAGTTCAGACTTGCACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

420

Amino Acids

47.12

Weight (kDa)

8.4

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	41 - 77	2.3e-07	F-box domain
FBA_3	PF08268	165 - 391	1.3e-18	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30670 FvH4_5g30670 FvH4_5g30670 FvH4_5g31300
malus_domestica	MD15G1404600.v1.1
prunus_persica	Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1
pyrus_communis	pycom15g36200
rosa_chinensis	RchiOBHm_Chr7g0218801 RchiOBHm_Chr7g0225531 RchiOBHm_Chr7g0226391 RchiOBHm_Chr7g0231221
rosa_laevigata	RLG00000001428 RLG00000001721 RLG00000001808 RLG00000002341
rosa_multiflora	Rmu_sc0003876.1_g000039 Rmu_sc0004426.1_g000001 Rmu_sc0004571.1_g000021 Rmu_sc0012403.1_g000002 Rmu_sc0025113.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229430 Rroxscaffold_3G00233700
rosa_rugosa	Rorug07G0230700 Rorug07G0237000 Rorug07G0265200
rosa_samantha	Rh7AG321300 Rh7AG322200 Rh7AG372900 Rh7AG385100 Rh7AG418400 Rh7BG365200 Rh7BG371000 Rh7BG394100 Rh7CG337800 Rh7CG391100 Rh7CG404500 Rh7CG438200 Rh7DG376000 Rh7DG384200 Rh7DG412400
rosa_wichuraiana	Rw7G031740 Rw7G032190 Rw7G032350 Rw7G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	515
Acc65I	GGTACC	1 cut(s)	602
AccB1I	GGYRCC	1 cut(s)	602
AccBSI	CCGCTC	1 cut(s)	895
AciI	CCGC	3 cut(s)	458, 893, 976
AclWI	GGATC	2 cut(s)	1091, 1238
AcsI	RAATTY	2 cut(s)	227, 419
AcuI	CTGAAG	1 cut(s)	158
AfaI	GTAC	2 cut(s)	153, 604
AfiI	CCNNNNNNNGG	1 cut(s)	764
AgeI	ACCGGT	1 cut(s)	656
AgsI	TTSAA	7 cut(s)	167, 356, 565, 932, 997, 1105, 1169
AhdI	GACNNNNNGTC	1 cut(s)	557
AjnI	CCWGG	1 cut(s)	575
AluBI	AGCT	5 cut(s)	364, 503, 583, 708, 812
AluI	AGCT	5 cut(s)	364, 503, 583, 708, 812
Alw26I	GTCTC	1 cut(s)	1104
AlwI	GGATC	2 cut(s)	1091, 1238
AoxI	GGCC	2 cut(s)	34, 402
ApoI	RAATTY	2 cut(s)	227, 419
AsiGI	ACCGGT	1 cut(s)	656
Asp700I	GAANNNNTTC	2 cut(s)	171, 1001
Asp718I	GGTACC	1 cut(s)	602
AspLEI	GCGC	1 cut(s)	944
AspS9I	GGNCC	2 cut(s)	403, 755
AsuHPI	GGTGA	3 cut(s)	646, 671, 875
AvaII	GGWCC	1 cut(s)	755
AxyI	CCTNAGG	1 cut(s)	828
BanI	GGYRCC	1 cut(s)	602
BanII	GRGCYC	1 cut(s)	771
BarI	GAAGNNNNNNTAC	2 cut(s)	1177, 1209
BbsI	GAAGAC	2 cut(s)	301, 716
BciT130I	CCWGG	1 cut(s)	577
BciVI	GTATCC	1 cut(s)	392
BclI	TGATCA	1 cut(s)	835
BcoDI	GTCTC	1 cut(s)	1104
BfaI	CTAG	1 cut(s)	47
BfuAI	ACCTGC	1 cut(s)	515
BfuI	GTATCC	1 cut(s)	392
Bme1390I	CCNGG	1 cut(s)	577
Bme18I	GGWCC	1 cut(s)	755
BmeRI	GACNNNNNGTC	1 cut(s)	557
BmgT120I	GGNCC	2 cut(s)	403, 755
BmiI	GGNNCC	2 cut(s)	604, 1048
BmrFI	CCNGG	1 cut(s)	577
BmsI	GCATC	3 cut(s)	153, 226, 326
BpiI	GAAGAC	2 cut(s)	301, 716
BpmI	CTGGAG	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	230
Bsa29I	ATCGAT	2 cut(s)	234, 1233
BsaBI	GATNNNNATC	2 cut(s)	240, 256
BsaJI	CCNNGG	2 cut(s)	200, 312
BsaWI	WCCGGW	1 cut(s)	656
Bsc4I	CCNNNNNNNGG	1 cut(s)	764
Bse118I	RCCGGY	1 cut(s)	656
Bse1I	ACTGG	1 cut(s)	824
Bse21I	CCTNAGG	1 cut(s)	828
Bse3DI	GCAATG	1 cut(s)	517
Bse8I	GATNNNNATC	2 cut(s)	240, 256
BseBI	CCWGG	1 cut(s)	577
BseCI	ATCGAT	2 cut(s)	234, 1233
BseDI	CCNNGG	2 cut(s)	200, 312
BseGI	GGATG	3 cut(s)	144, 694, 1187
BseJI	GATNNNNATC	2 cut(s)	240, 256
BseLI	CCNNNNNNNGG	1 cut(s)	764
BseMI	GCAATG	1 cut(s)	517
BseMII	CTCAG	2 cut(s)	363, 842
BseNI	ACTGG	1 cut(s)	824
BshFI	GGCC	2 cut(s)	36, 404
BshNI	GGYRCC	1 cut(s)	602
BshTI	ACCGGT	1 cut(s)	656
BshVI	ATCGAT	2 cut(s)	234, 1233
BsiSI	CCGG	1 cut(s)	657
BslI	CCNNNNNNNGG	1 cut(s)	764
BsmAI	GTCTC	1 cut(s)	1104
BsmBI	CGTCTC	1 cut(s)	1104
BsnI	GGCC	2 cut(s)	36, 404
Bsp1286I	GDGCHC	1 cut(s)	771
Bsp143I	GATC	5 cut(s)	59, 251, 835, 1083, 1230
Bsp19I	CCATGG	1 cut(s)	312
BspACI	CCGC	3 cut(s)	458, 893, 976
BspANI	GGCC	2 cut(s)	36, 404
BspCNI	CTCAG	2 cut(s)	362, 841
BspDI	ATCGAT	2 cut(s)	234, 1233
BspHI	TCATGA	2 cut(s)	916, 961
BspLI	GGNNCC	2 cut(s)	604, 1048
BspMI	ACCTGC	1 cut(s)	515
BspPI	GGATC	2 cut(s)	1091, 1238
BspT107I	GGYRCC	1 cut(s)	602
BsrBI	CCGCTC	1 cut(s)	895
BsrDI	GCAATG	1 cut(s)	517
BsrFI	RCCGGY	1 cut(s)	656
BsrI	ACTGG	1 cut(s)	824
BssAI	RCCGGY	1 cut(s)	656
BssECI	CCNNGG	2 cut(s)	200, 312
BssMI	GATC	5 cut(s)	59, 251, 835, 1083, 1230
BssT1I	CCWWGG	2 cut(s)	200, 312
Bst2UI	CCWGG	1 cut(s)	577
Bst4CI	ACNGT	2 cut(s)	372, 1042
Bst6I	CTCTTC	3 cut(s)	78, 177, 324
BstC8I	GCNNGC	2 cut(s)	197, 1124
BstDEI	CTNAG	3 cut(s)	349, 828, 1161
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	3 cut(s)	144, 694, 1187
BstHHI	GCGC	1 cut(s)	944
BstKTI	GATC	5 cut(s)	62, 254, 838, 1086, 1233
BstMAI	GTCTC	1 cut(s)	1104
BstMBI	GATC	5 cut(s)	59, 251, 835, 1083, 1230
BstMWI	GCNNNNNNNGC	1 cut(s)	809
BstNI	CCWGG	1 cut(s)	577
BstSCI	CCNGG	1 cut(s)	575
BstV2I	GAAGAC	2 cut(s)	301, 716
Bsu15I	ATCGAT	2 cut(s)	234, 1233
Bsu36I	CCTNAGG	1 cut(s)	828
BsuI	GTATCC	1 cut(s)	392
BsuRI	GGCC	2 cut(s)	36, 404
BsuTUI	ATCGAT	2 cut(s)	234, 1233
BtgI	CCRYGG	1 cut(s)	312
BtsCI	GGATG	3 cut(s)	144, 694, 1187
BtsIMutI	CAGTG	2 cut(s)	817, 1047
BveI	ACCTGC	1 cut(s)	515
Cac8I	GCNNGC	2 cut(s)	197, 1124
CciI	TCATGA	2 cut(s)	916, 961
CfoI	GCGC	1 cut(s)	944
Cfr10I	RCCGGY	1 cut(s)	656
Cfr13I	GGNCC	2 cut(s)	403, 755
ClaI	ATCGAT	2 cut(s)	234, 1233
Csp6I	GTAC	2 cut(s)	152, 603
CspAI	ACCGGT	1 cut(s)	656
CviAII	CATG	9 cut(s)	211, 313, 738, 917, 962, 1060, 1197, 1208, 1227
CviQI	GTAC	2 cut(s)	152, 603
DdeI	CTNAG	3 cut(s)	349, 828, 1161
DpnI	GATC	5 cut(s)	61, 253, 837, 1085, 1232
DpnII	GATC	5 cut(s)	59, 251, 835, 1083, 1230
DriI	GACNNNNNGTC	1 cut(s)	557
Eam1104I	CTCTTC	3 cut(s)	78, 177, 324
Eam1105I	GACNNNNNGTC	1 cut(s)	557
EarI	CTCTTC	3 cut(s)	78, 177, 324
EciI	GGCGGA	1 cut(s)	473
Eco130I	CCWWGG	2 cut(s)	200, 312
Eco147I	AGGCCT	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	771
Eco47I	GGWCC	1 cut(s)	755
Eco57I	CTGAAG	1 cut(s)	158
Eco81I	CCTNAGG	1 cut(s)	828
EcoRII	CCWGG	1 cut(s)	575
EcoT14I	CCWWGG	2 cut(s)	200, 312
EcoT38I	GRGCYC	1 cut(s)	771
ErhI	CCWWGG	2 cut(s)	200, 312
Esp3I	CGTCTC	1 cut(s)	1104
FaeI	CATG	9 cut(s)	214, 316, 741, 920, 965, 1063, 1200, 1211, 1230
FatI	CATG	9 cut(s)	210, 312, 737, 916, 961, 1059, 1196, 1207, 1226
FbaI	TGATCA	1 cut(s)	835
FokI	GGATG	3 cut(s)	131, 701, 1194
FriOI	GRGCYC	1 cut(s)	771
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	943
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	2 cut(s)	36, 404
HapII	CCGG	1 cut(s)	657
HhaI	GCGC	1 cut(s)	944
Hin1II	CATG	9 cut(s)	214, 316, 741, 920, 965, 1063, 1200, 1211, 1230
Hin6I	GCGC	1 cut(s)	942
HinP1I	GCGC	1 cut(s)	942
HindIII	AAGCTT	1 cut(s)	362
HpaII	CCGG	1 cut(s)	657
HphI	GGTGA	3 cut(s)	646, 671, 875
Hpy166II	GTNNAC	1 cut(s)	868
Hpy188I	TCNGA	7 cut(s)	177, 256, 500, 729, 785, 840, 1246
Hpy188III	TCNNGA	8 cut(s)	326, 562, 686, 917, 962, 988, 1018, 1105
Hpy8I	GTNNAC	1 cut(s)	868
HpyAV	CCTTC	3 cut(s)	538, 991, 1112
HpyCH4III	ACNGT	2 cut(s)	372, 1042
HpyCH4V	TGCA	9 cut(s)	195, 440, 510, 590, 641, 761, 817, 909, 1252
HpyF10VI	GCNNNNNNNGC	1 cut(s)	809
HpyF3I	CTNAG	3 cut(s)	349, 828, 1161
Hsp92II	CATG	9 cut(s)	214, 316, 741, 920, 965, 1063, 1200, 1211, 1230
HspAI	GCGC	1 cut(s)	942
KpnI	GGTACC	1 cut(s)	606
Ksp22I	TGATCA	1 cut(s)	835
Kzo9I	GATC	5 cut(s)	59, 251, 835, 1083, 1230
LmnI	GCTCC	3 cut(s)	328, 809, 900
LweI	GCATC	3 cut(s)	153, 226, 326
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	4 cut(s)	395, 571, 652, 955
MalI	GATC	5 cut(s)	61, 253, 837, 1085, 1232
MbiI	CCGCTC	1 cut(s)	895
MboI	GATC	5 cut(s)	59, 251, 835, 1083, 1230
MboII	GAAGA	8 cut(s)	95, 164, 297, 300, 306, 341, 716, 1127
MfeI	CAATTG	1 cut(s)	804
MhlI	GDGCHC	1 cut(s)	771
MluCI	AATT	7 cut(s)	227, 267, 376, 419, 441, 519, 804
MlyI	GAGTC	1 cut(s)	730
MroXI	GAANNNNTTC	2 cut(s)	171, 1001
MseI	TTAA	8 cut(s)	216, 266, 444, 479, 518, 540, 750, 1079
MslI	CAYNNNNRTG	1 cut(s)	1040
MspA1I	CMGCKG	1 cut(s)	708
MspI	CCGG	1 cut(s)	657
MspR9I	CCNGG	1 cut(s)	577
MunI	CAATTG	1 cut(s)	804
MvaI	CCWGG	1 cut(s)	577
MwoI	GCNNNNNNNGC	1 cut(s)	809
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	5 cut(s)	59, 251, 835, 1083, 1230
NlaIII	CATG	9 cut(s)	214, 316, 741, 920, 965, 1063, 1200, 1211, 1230
NlaIV	GGNNCC	2 cut(s)	604, 1048
NmeAIII	GCCGAG	1 cut(s)	380
NmuCI	GTSAC	3 cut(s)	571, 652, 955
PagI	TCATGA	2 cut(s)	916, 961
PceI	AGGCCT	1 cut(s)	36
PdmI	GAANNNNTTC	2 cut(s)	171, 1001
PfeI	GAWTC	9 cut(s)	167, 257, 334, 356, 565, 626, 823, 1027, 1063
PinAI	ACCGGT	1 cut(s)	656
PleI	GAGTC	1 cut(s)	729
PpsI	GAGTC	1 cut(s)	729
Psp6I	CCWGG	1 cut(s)	575
PspGI	CCWGG	1 cut(s)	575
PspN4I	GGNNCC	2 cut(s)	604, 1048
PspPI	GGNCC	2 cut(s)	403, 755
PvuII	CAGCTG	1 cut(s)	708
RsaI	GTAC	2 cut(s)	153, 604
RsaNI	GTAC	2 cut(s)	152, 603
RseI	CAYNNNNRTG	1 cut(s)	1040
SaqAI	TTAA	8 cut(s)	216, 266, 444, 479, 518, 540, 750, 1079
Sau3AI	GATC	5 cut(s)	59, 251, 835, 1083, 1230
Sau96I	GGNCC	2 cut(s)	403, 755
SchI	GAGTC	1 cut(s)	730
ScrFI	CCNGG	1 cut(s)	577
SduI	GDGCHC	1 cut(s)	771
SfaNI	GCATC	3 cut(s)	153, 226, 326
SgrAI	CRCCGGYG	1 cut(s)	656
SinI	GGWCC	1 cut(s)	755
SmiMI	CAYNNNNRTG	1 cut(s)	1040
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	7 cut(s)	227, 267, 376, 419, 441, 519, 804
SseBI	AGGCCT	1 cut(s)	36
SsiI	CCGC	3 cut(s)	458, 893, 976
SspMI	CTAG	1 cut(s)	47
StuI	AGGCCT	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	575
StyI	CCWWGG	2 cut(s)	200, 312
TaaI	ACNGT	2 cut(s)	372, 1042
TaqI	TCGA	2 cut(s)	234, 1233
TasI	AATT	7 cut(s)	227, 267, 376, 419, 441, 519, 804
TfiI	GAWTC	9 cut(s)	167, 257, 334, 356, 565, 626, 823, 1027, 1063
Tru1I	TTAA	8 cut(s)	216, 266, 444, 479, 518, 540, 750, 1079
Tru9I	TTAA	8 cut(s)	216, 266, 444, 479, 518, 540, 750, 1079
TscAI	CASTG	2 cut(s)	824, 1047
TseFI	GTSAC	3 cut(s)	571, 652, 955
Tsp45I	GTSAC	3 cut(s)	571, 652, 955
TspDTI	ATGAA	5 cut(s)	220, 639, 804, 1185, 1251
TspRI	CASTG	2 cut(s)	824, 1047
VpaK11BI	GGWCC	1 cut(s)	755
XapI	RAATTY	2 cut(s)	227, 419
XmnI	GAANNNNTTC	2 cut(s)	171, 1001
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.