Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001689

Physical Location & Seq

Genomic Coordinates Forward (+)

32502880 .. 32503890

Gene Structure 1011 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002341

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGATGGTGACAAGAAGCAAGAGTTCAGGCCTATTAAAGTTAGTGGAGGAGAGGTTATTGAAGAGGGAAACAGAGGAAGAGAAAAAGCAAGCACAAATTTCATATATCCCAAAGGACTGTATCTCAAACATCCTTGCACGACTTCCTGCTGACTCTCTTCAAAGGTCGAGTTTTGTTTGCAAACCATGGTATAATGTAGTTAAAAACCCCAAATTCATTCATACTCATCTCCAACGTTCTGAATCTGTTTTGATTTTTTTAACACCAAATATAAAGGAAAGTGTGCACCCTATTTCTAAGAAGCTAAAAATGGGAGAAAATGGAAGGTTATATCCTATGGCATCTAACCTACAGGAGAAGCAAAACAAAATTCCAGTTGAATCAAAACTTTTTGACCCAAACAGTATCCCCATTTTTGGTCACCCAGCCTTAAATTCTCCAAAAAATTTTGTTCAGTTTCTGGAATTTAAAAATGGTAAGAGTGACATAGGAGAATACAGTTTAAGTTGCTTCGGCAATAATATTAGAGCCACCTGCAATGGTCTAATATTGCTTGACAACAAATTGAAGAAGGGAGGAGTCATAGTCTTGAATCCTGTGACTAGGAAGGTGATTGCACGTCCTGTGGGTACCTTGTGTCGTCTTCCACATCAAGAATCATATGGTTTCGCACTGAGTGATGTAACTGGTGAGTATAAAGTAGTCCACTTGTTTCTGGATCAGTTGGGGTTTGCTGGCTGTGAGTTATTGAGCCTTAATAAGAAAGCTTGGAGAGAGGTCAGTGGTCCTTCTTTCGGGCTCTTTGGTAATAATGGGTTTGGATATGCACCTGTTTCACCAGCCGGAGCTTTGCACTGGATTCCTCATTTTAATGGAAGCAATTACGTAGTGTCCATGGAAGTTGACAAGGAGAAGTTTCACCAAATACCGTTCCCTAAGAGTTGCAGAACTCATGATAGGATTATAGAAGCAGAACTCATGATAGGATTATTGAAATTGGTGGCTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

337

Amino Acids

37.7

Weight (kDa)

9.42

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	34 - 73	7.8e-09	F-box domain
FBA_3	PF08268	173 - 317	6.6e-08	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30670 FvH4_5g30670 FvH4_5g30670 FvH4_5g31300
malus_domestica	MD15G1404600.v1.1
prunus_persica	Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1
pyrus_communis	pycom15g36200
rosa_chinensis	RchiOBHm_Chr7g0218801 RchiOBHm_Chr7g0225531 RchiOBHm_Chr7g0226391 RchiOBHm_Chr7g0231221
rosa_laevigata	RLG00000001428 RLG00000001721 RLG00000001808 RLG00000002341
rosa_multiflora	Rmu_sc0003876.1_g000039 Rmu_sc0004426.1_g000001 Rmu_sc0004571.1_g000021 Rmu_sc0012403.1_g000002 Rmu_sc0025113.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229430 Rroxscaffold_3G00233700
rosa_rugosa	Rorug07G0230700 Rorug07G0237000 Rorug07G0265200
rosa_samantha	Rh7AG321300 Rh7AG322200 Rh7AG372900 Rh7AG385100 Rh7AG418400 Rh7BG365200 Rh7BG371000 Rh7BG394100 Rh7CG337800 Rh7CG391100 Rh7CG404500 Rh7CG438200 Rh7DG376000 Rh7DG384200 Rh7DG412400
rosa_wichuraiana	Rw7G031740 Rw7G032190 Rw7G032350 Rw7G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	542
Acc36I	ACCTGC	1 cut(s)	542
Acc65I	GGTACC	1 cut(s)	629
AccB1I	GGYRCC	1 cut(s)	629
AclI	AACGTT	1 cut(s)	235
AclWI	GGATC	1 cut(s)	726
AcsI	RAATTY	6 cut(s)	96, 212, 369, 433, 445, 464
AdeI	CACNNNGTG	1 cut(s)	677
AfaI	GTAC	1 cut(s)	631
AfiI	CCNNNNNNNGG	2 cut(s)	416, 794
AgsI	TTSAA	6 cut(s)	61, 161, 380, 568, 592, 994
AjiI	CACGTC	1 cut(s)	620
AluBI	AGCT	3 cut(s)	304, 767, 848
AluI	AGCT	3 cut(s)	304, 767, 848
Alw21I	GWGCWC	1 cut(s)	288
Alw44I	GTGCAC	1 cut(s)	284
AlwI	GGATC	1 cut(s)	726
AlwNI	CAGNNNCTG	1 cut(s)	460
AoxI	GGCC	1 cut(s)	28
ApaLI	GTGCAC	1 cut(s)	284
ApoI	RAATTY	6 cut(s)	96, 212, 369, 433, 445, 464
Asp718I	GGTACC	1 cut(s)	629
AspS9I	GGNCC	1 cut(s)	785
AsuHPI	GGTGA	6 cut(s)	19, 413, 622, 701, 828, 911
AvaII	GGWCC	1 cut(s)	785
BaeGI	GKGCMC	1 cut(s)	288
BanI	GGYRCC	1 cut(s)	629
BanII	GRGCYC	1 cut(s)	801
BbsI	GAAGAC	1 cut(s)	635
Bbv12I	GWGCWC	1 cut(s)	288
BciVI	GTATCC	1 cut(s)	416
BfaI	CTAG	1 cut(s)	603
BfmI	CTRYAG	1 cut(s)	350
BfuAI	ACCTGC	1 cut(s)	542
BfuI	GTATCC	1 cut(s)	416
Bme18I	GGWCC	1 cut(s)	785
BmgBI	CACGTC	1 cut(s)	620
BmgT120I	GGNCC	1 cut(s)	785
BmiI	GGNNCC	1 cut(s)	631
BmsI	GCATC	1 cut(s)	350
BpiI	GAAGAC	1 cut(s)	635
BsaAI	YACGTR	1 cut(s)	886
BsaJI	CCNNGG	2 cut(s)	185, 894
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 68, 570, 600
Bsc4I	CCNNNNNNNGG	2 cut(s)	416, 794
Bse1I	ACTGG	3 cut(s)	374, 691, 860
Bse3DI	GCAATG	1 cut(s)	544
BseDI	CCNNGG	2 cut(s)	185, 894
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	2 cut(s)	416, 794
BseMI	GCAATG	1 cut(s)	544
BseMII	CTCAG	1 cut(s)	665
BseNI	ACTGG	3 cut(s)	374, 691, 860
BseRI	GAGGAG	2 cut(s)	62, 591
BseSI	GKGCMC	1 cut(s)	288
BseYI	CCCAGC	1 cut(s)	424
BshFI	GGCC	1 cut(s)	30
BshNI	GGYRCC	1 cut(s)	629
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	843
BslI	CCNNNNNNNGG	2 cut(s)	416, 794
BsnI	GGCC	1 cut(s)	30
Bsp1286I	GDGCHC	2 cut(s)	288, 801
Bsp143I	GATC	1 cut(s)	718
Bsp19I	CCATGG	2 cut(s)	185, 894
BspANI	GGCC	1 cut(s)	30
BspCNI	CTCAG	1 cut(s)	666
BspHI	TCATGA	2 cut(s)	952, 978
BspLI	GGNNCC	1 cut(s)	631
BspMI	ACCTGC	1 cut(s)	542
BspPI	GGATC	1 cut(s)	726
BspT107I	GGYRCC	1 cut(s)	629
BsrDI	GCAATG	1 cut(s)	544
BsrI	ACTGG	3 cut(s)	374, 691, 860
BssECI	CCNNGG	2 cut(s)	185, 894
BssMI	GATC	1 cut(s)	718
BssT1I	CCWWGG	2 cut(s)	185, 894
Bst4CI	ACNGT	4 cut(s)	119, 404, 500, 930
Bst6I	CTCTTC	3 cut(s)	56, 72, 162
BstBAI	YACGTR	1 cut(s)	886
BstC8I	GCNNGC	2 cut(s)	90, 736
BstDEI	CTNAG	3 cut(s)	297, 674, 936
BstDSI	CCRYGG	2 cut(s)	185, 894
BstEII	GGTNACC	1 cut(s)	419
BstF5I	GGATG	1 cut(s)	129
BstKTI	GATC	1 cut(s)	721
BstMBI	GATC	1 cut(s)	718
BstPI	GGTNACC	1 cut(s)	419
BstSFI	CTRYAG	1 cut(s)	350
BstSLI	GKGCMC	1 cut(s)	288
BstSNI	TACGTA	1 cut(s)	886
BstV2I	GAAGAC	1 cut(s)	635
BsuI	GTATCC	1 cut(s)	416
BsuRI	GGCC	1 cut(s)	30
BtgI	CCRYGG	2 cut(s)	185, 894
BtrI	CACGTC	1 cut(s)	620
BtsCI	GGATG	1 cut(s)	129
BtsIMutI	CAGTG	3 cut(s)	671, 787, 853
BveI	ACCTGC	1 cut(s)	542
Cac8I	GCNNGC	2 cut(s)	90, 736
CaiI	CAGNNNCTG	1 cut(s)	460
CciI	TCATGA	2 cut(s)	952, 978
Cfr13I	GGNCC	1 cut(s)	785
Csp6I	GTAC	1 cut(s)	630
CviAII	CATG	4 cut(s)	186, 895, 953, 979
CviQI	GTAC	1 cut(s)	630
DdeI	CTNAG	3 cut(s)	297, 674, 936
DpnI	GATC	1 cut(s)	720
DpnII	GATC	1 cut(s)	718
DraI	TTTAAA	1 cut(s)	469
DraIII	CACNNNGTG	1 cut(s)	677
Eam1104I	CTCTTC	3 cut(s)	56, 72, 162
EarI	CTCTTC	3 cut(s)	56, 72, 162
Eco105I	TACGTA	1 cut(s)	886
Eco130I	CCWWGG	2 cut(s)	185, 894
Eco147I	AGGCCT	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	801
Eco47I	GGWCC	1 cut(s)	785
Eco91I	GGTNACC	1 cut(s)	419
EcoO65I	GGTNACC	1 cut(s)	419
EcoT14I	CCWWGG	2 cut(s)	185, 894
EcoT38I	GRGCYC	1 cut(s)	801
ErhI	CCWWGG	2 cut(s)	185, 894
FaeI	CATG	4 cut(s)	189, 898, 956, 982
FatI	CATG	4 cut(s)	185, 894, 952, 978
FauNDI	CATATG	1 cut(s)	661
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	801
FspBI	CTAG	1 cut(s)	603
GsaI	CCCAGC	1 cut(s)	428
HaeIII	GGCC	1 cut(s)	30
HapII	CCGG	1 cut(s)	843
Hin1II	CATG	4 cut(s)	189, 898, 956, 982
HincII	GTYRAC	1 cut(s)	904
HindII	GTYRAC	1 cut(s)	904
HindIII	AAGCTT	1 cut(s)	765
HinfI	GANTC	7 cut(s)	152, 242, 380, 579, 592, 656, 859
HpaII	CCGG	1 cut(s)	843
HphI	GGTGA	6 cut(s)	19, 413, 622, 701, 828, 911
Hpy166II	GTNNAC	3 cut(s)	286, 706, 904
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	6 cut(s)	461, 589, 653, 716, 953, 979
Hpy8I	GTNNAC	3 cut(s)	286, 706, 904
HpyAV	CCTTC	4 cut(s)	318, 565, 601, 798
HpyCH4III	ACNGT	4 cut(s)	119, 404, 500, 930
HpyCH4IV	ACGT	3 cut(s)	235, 619, 885
HpyCH4V	TGCA	8 cut(s)	137, 180, 286, 537, 617, 827, 853, 945
HpyF3I	CTNAG	3 cut(s)	297, 674, 936
HpySE526I	ACGT	3 cut(s)	235, 619, 885
Hsp92II	CATG	4 cut(s)	189, 898, 956, 982
KpnI	GGTACC	1 cut(s)	633
Kzo9I	GATC	1 cut(s)	718
LmnI	GCTCC	1 cut(s)	845
LweI	GCATC	1 cut(s)	350
MaeI	CTAG	1 cut(s)	603
MaeII	ACGT	3 cut(s)	235, 619, 885
MaeIII	GTNAC	5 cut(s)	7, 419, 482, 598, 682
MalI	GATC	1 cut(s)	720
MboI	GATC	1 cut(s)	718
MboII	GAAGA	5 cut(s)	73, 89, 149, 580, 635
MhlI	GDGCHC	2 cut(s)	288, 801
MluCI	AATT	9 cut(s)	96, 212, 369, 433, 445, 464, 563, 880, 995
MlyI	GAGTC	2 cut(s)	146, 588
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	7 cut(s)	40, 45, 57, 67, 569, 769, 873
MseI	TTAA	8 cut(s)	35, 201, 260, 431, 468, 503, 756, 870
MslI	CAYNNNNRTG	1 cut(s)	870
MspI	CCGG	1 cut(s)	843
NcoI	CCATGG	2 cut(s)	185, 894
NdeI	CATATG	1 cut(s)	661
NdeII	GATC	1 cut(s)	718
NlaIII	CATG	4 cut(s)	189, 898, 956, 982
NlaIV	GGNNCC	1 cut(s)	631
NmuCI	GTSAC	4 cut(s)	7, 419, 482, 598
PagI	TCATGA	2 cut(s)	952, 978
PaqCI	CACCTGC	1 cut(s)	542
PceI	AGGCCT	1 cut(s)	30
PfeI	GAWTC	5 cut(s)	242, 380, 592, 656, 859
PleI	GAGTC	2 cut(s)	146, 587
PpsI	GAGTC	2 cut(s)	146, 587
Ppu21I	YACGTR	1 cut(s)	886
Psp1406I	AACGTT	1 cut(s)	235
PspEI	GGTNACC	1 cut(s)	419
PspFI	CCCAGC	1 cut(s)	424
PspN4I	GGNNCC	1 cut(s)	631
PspPI	GGNCC	1 cut(s)	785
PstNI	CAGNNNCTG	1 cut(s)	460
RsaI	GTAC	1 cut(s)	631
RsaNI	GTAC	1 cut(s)	630
RseI	CAYNNNNRTG	1 cut(s)	870
SaqAI	TTAA	8 cut(s)	35, 201, 260, 431, 468, 503, 756, 870
Sau3AI	GATC	1 cut(s)	718
Sau96I	GGNCC	1 cut(s)	785
SchI	GAGTC	2 cut(s)	146, 588
SduI	GDGCHC	2 cut(s)	288, 801
SfaNI	GCATC	1 cut(s)	350
SfcI	CTRYAG	1 cut(s)	350
SinI	GGWCC	1 cut(s)	785
SmiMI	CAYNNNNRTG	1 cut(s)	870
SnaBI	TACGTA	1 cut(s)	886
Sse9I	AATT	9 cut(s)	96, 212, 369, 433, 445, 464, 563, 880, 995
SseBI	AGGCCT	1 cut(s)	30
SspI	AATATT	2 cut(s)	523, 549
SspMI	CTAG	1 cut(s)	603
StuI	AGGCCT	1 cut(s)	30
StyI	CCWWGG	2 cut(s)	185, 894
TaaI	ACNGT	4 cut(s)	119, 404, 500, 930
TaiI	ACGT	3 cut(s)	238, 622, 888
TaqI	TCGA	1 cut(s)	167
TasI	AATT	9 cut(s)	96, 212, 369, 433, 445, 464, 563, 880, 995
TfiI	GAWTC	5 cut(s)	242, 380, 592, 656, 859
Tru1I	TTAA	8 cut(s)	35, 201, 260, 431, 468, 503, 756, 870
Tru9I	TTAA	8 cut(s)	35, 201, 260, 431, 468, 503, 756, 870
TscAI	CASTG	3 cut(s)	678, 787, 860
TseFI	GTSAC	4 cut(s)	7, 419, 482, 598
Tsp45I	GTSAC	4 cut(s)	7, 419, 482, 598
TspDTI	ATGAA	3 cut(s)	90, 205, 209
TspRI	CASTG	3 cut(s)	678, 787, 860
VneI	GTGCAC	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	785
XapI	RAATTY	6 cut(s)	96, 212, 369, 433, 445, 464
XspI	CTAG	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.