Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001689

Physical Location & Seq

Genomic Coordinates Forward (+)

54778484 .. 54784189

Gene Structure 5706 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20720

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGATGGCAAAATCAATAGGTAGCAAGAACTGGGGCCTATTGAGGCTAGTGGAGGAAAGATCATTGAGCAAGAAAACAGAGGAAGAGAAAAAACATCCACAAGAAACACAGATCCCTTATCTCCCTAAAGATTGTATCTCAAGCATCCTTGTACGACTTCCTATTGAATCTCTTCAGAGGTCAAGTTTTGTGTGCAAGCCTTGGTTTAGCATAATTAAAAGTCCCAAATTCATCGATGCTCATCTCAACCGATCTGAATCTGTTTTGATTTTTCTATCGCCAATAACAGAGGAAAGGTCATATTCTTTTTCCATGGCATCTGTTCCAGAAGAGAATCCGAACACTGTCTCAGTTGAATCAAAACTTCTACAGCCAAATTGTATCCCCATTTTCAGCAACTCGTCCCTAAACTCTACAAAATTTTCTGTTCAGTTTCTTACAATTAAAAATGGTAAGACTGAGATAGGAGGGTACAGTTTAAATTGCTTGGGAAGTATCAGAGCCACCTGCAATGGTCTAATTTTACTTGATAACAAAGTTAAGAAGGGAGGACTTATAGTCTTGAATCCTGTGACCAGGAAGCTGATTGCTCTTCCTCTCGGTACCTTACATCGCCCATATAATGAATCCTATGGTTTTGCATTGAGTGATGTCACCGGTGAATATAAAATAGTCCATTTGTTTCGGGATGAGTCGGGGTTTGTCAGCTGTGAAATTTTGAGTCTTAGGAAAAAAGCATGGAGAGCAGTCAATGGTCTTGCATCCGGGATCTTTGGTTGGTTCGGATATACACCTGTTTCAGCAATCGGAGCTTTGCACTGGATTCCTCAAGTTGATCGGAGCGATTACATTGTTTCTGTGGAAGTCCACAAGGAGAAGTTTCACCAAATACCGCTCCCCAAAAGTTGCAGAACTCATGACAGGATTATTGAAATGGGAGGTGCATTGGGTTTTGTCATTCATGAGGAGATAAACCGCATTGACGTCTGGATTTTGAAGGGTTTCTGTGGGGAAGTCTGGACAAAGAATCACAGTATCACAGTGGGTTCCATTATAGACATGATTCCTTATTTCAGTTTAAGGATCAAGGGAGATATTATTTTCAAGAGAGACGAAGATGGCTCGCTATATGCTTATGACTTTCAGCAAGAAGACTTGACGAAGGTTGAGATGGTAGAGGAATGTATCCCAACGTCTTCTGCTACATGCCTACCTCATGTCAACAGCCTTGTATCATGGATGGATGAAAGTTCGGACGTGCATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

422

Amino Acids

47.51

Weight (kDa)

6.87

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	41 - 77	1e-06	F-box domain
FBA_3	PF08268	147 - 391	2.1e-19	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30670 FvH4_5g30670 FvH4_5g30670 FvH4_5g31300
malus_domestica	MD15G1404600.v1.1
prunus_persica	Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1
pyrus_communis	pycom15g36200
rosa_chinensis	RchiOBHm_Chr7g0218801 RchiOBHm_Chr7g0225531 RchiOBHm_Chr7g0226391 RchiOBHm_Chr7g0231221
rosa_laevigata	RLG00000001428 RLG00000001721 RLG00000001808 RLG00000002341
rosa_multiflora	Rmu_sc0003876.1_g000039 Rmu_sc0004426.1_g000001 Rmu_sc0004571.1_g000021 Rmu_sc0012403.1_g000002 Rmu_sc0025113.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229430 Rroxscaffold_3G00233700
rosa_rugosa	Rorug07G0230700 Rorug07G0237000 Rorug07G0265200
rosa_samantha	Rh7AG321300 Rh7AG322200 Rh7AG372900 Rh7AG385100 Rh7AG418400 Rh7BG365200 Rh7BG371000 Rh7BG394100 Rh7CG337800 Rh7CG391100 Rh7CG404500 Rh7CG438200 Rh7DG376000 Rh7DG384200 Rh7DG412400
rosa_wichuraiana	Rw7G031740 Rw7G032190 Rw7G032350 Rw7G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	515
AatII	GACGTC	1 cut(s)	987
Acc36I	ACCTGC	1 cut(s)	515
Acc65I	GGTACC	1 cut(s)	602
AccB1I	GGYRCC	1 cut(s)	602
AccBSI	CCGCTC	1 cut(s)	895
AciI	CCGC	2 cut(s)	893, 976
AclWI	GGATC	3 cut(s)	106, 776, 1091
AcsI	RAATTY	3 cut(s)	227, 419, 714
AcuI	CTGAAG	1 cut(s)	158
AcyI	GRCGYC	1 cut(s)	984
AfaI	GTAC	3 cut(s)	153, 473, 604
AgeI	ACCGGT	1 cut(s)	656
AgsI	TTSAA	6 cut(s)	167, 356, 565, 932, 997, 1105
AhdI	GACNNNNNGTC	1 cut(s)	557
AjiI	CACGTC	1 cut(s)	1258
AjnI	CCWGG	1 cut(s)	575
AluBI	AGCT	3 cut(s)	583, 708, 812
AluI	AGCT	3 cut(s)	583, 708, 812
Alw26I	GTCTC	2 cut(s)	352, 1104
AlwI	GGATC	3 cut(s)	106, 776, 1091
AoxI	GGCC	1 cut(s)	34
ApoI	RAATTY	3 cut(s)	227, 419, 714
AsiGI	ACCGGT	1 cut(s)	656
Asp700I	GAANNNNTTC	2 cut(s)	171, 1001
Asp718I	GGTACC	1 cut(s)	602
AspS9I	GGNCC	1 cut(s)	34
AsuC2I	CCSGG	1 cut(s)	766
AsuHPI	GGTGA	3 cut(s)	646, 671, 875
BanI	GGYRCC	1 cut(s)	602
BbsI	GAAGAC	2 cut(s)	1158, 1188
BccI	CCATC	3 cut(s)	1112, 1165, 1234
BciT130I	CCWGG	1 cut(s)	577
BciVI	GTATCC	2 cut(s)	392, 1196
BcnI	CCSGG	1 cut(s)	766
BcoDI	GTCTC	2 cut(s)	352, 1104
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	1 cut(s)	368
BfuAI	ACCTGC	1 cut(s)	515
BfuI	GTATCC	2 cut(s)	392, 1196
Bme1390I	CCNGG	2 cut(s)	577, 766
BmeRI	GACNNNNNGTC	1 cut(s)	557
BmgBI	CACGTC	1 cut(s)	1258
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	3 cut(s)	35, 604, 1048
BmrFI	CCNGG	2 cut(s)	577, 766
BmrI	ACTGGG	1 cut(s)	40
BmsI	GCATC	4 cut(s)	153, 226, 326, 770
BmuI	ACTGGG	1 cut(s)	40
BpiI	GAAGAC	2 cut(s)	1158, 1188
BpuEI	CTTGAG	2 cut(s)	124, 813
BpuMI	CCSGG	1 cut(s)	766
Bsa29I	ATCGAT	1 cut(s)	234
BsaBI	GATNNNNATC	2 cut(s)	240, 256
BsaHI	GRCGYC	1 cut(s)	984
BsaJI	CCNNGG	2 cut(s)	200, 312
BsaWI	WCCGGW	1 cut(s)	656
Bse118I	RCCGGY	1 cut(s)	656
Bse1I	ACTGG	2 cut(s)	35, 824
Bse3DI	GCAATG	1 cut(s)	517
Bse8I	GATNNNNATC	2 cut(s)	240, 256
BseBI	CCWGG	1 cut(s)	577
BseCI	ATCGAT	1 cut(s)	234
BseDI	CCNNGG	2 cut(s)	200, 312
BseGI	GGATG	6 cut(s)	94, 144, 694, 761, 1245, 1249
BseJI	GATNNNNATC	2 cut(s)	240, 256
BseMI	GCAATG	1 cut(s)	517
BseMII	CTCAG	2 cut(s)	363, 450
BseNI	ACTGG	2 cut(s)	35, 824
BseRI	GAGGAG	1 cut(s)	980
BshFI	GGCC	1 cut(s)	36
BshNI	GGYRCC	1 cut(s)	602
BshTI	ACCGGT	1 cut(s)	656
BshVI	ATCGAT	1 cut(s)	234
BsiSI	CCGG	2 cut(s)	657, 765
BslFI	GGGAC	2 cut(s)	207, 388
BsmAI	GTCTC	2 cut(s)	352, 1104
BsmBI	CGTCTC	1 cut(s)	1104
BsmFI	GGGAC	2 cut(s)	207, 388
BsnI	GGCC	1 cut(s)	36
Bsp143I	GATC	6 cut(s)	59, 111, 251, 768, 835, 1083
Bsp19I	CCATGG	1 cut(s)	312
BspACI	CCGC	2 cut(s)	893, 976
BspANI	GGCC	1 cut(s)	36
BspCNI	CTCAG	2 cut(s)	362, 451
BspDI	ATCGAT	1 cut(s)	234
BspHI	TCATGA	2 cut(s)	916, 961
BspLI	GGNNCC	3 cut(s)	35, 604, 1048
BspMI	ACCTGC	1 cut(s)	515
BspPI	GGATC	3 cut(s)	106, 776, 1091
BspQI	GCTCTTC	1 cut(s)	597
BspT107I	GGYRCC	1 cut(s)	602
BsrBI	CCGCTC	1 cut(s)	895
BsrDI	GCAATG	1 cut(s)	517
BsrFI	RCCGGY	1 cut(s)	656
BsrI	ACTGG	2 cut(s)	35, 824
BssAI	RCCGGY	1 cut(s)	656
BssECI	CCNNGG	2 cut(s)	200, 312
BssMI	GATC	6 cut(s)	59, 111, 251, 768, 835, 1083
BssNI	GRCGYC	1 cut(s)	984
BssT1I	CCWWGG	2 cut(s)	200, 312
Bst2UI	CCWGG	1 cut(s)	577
Bst4CI	ACNGT	4 cut(s)	346, 476, 1034, 1042
Bst6I	CTCTTC	4 cut(s)	78, 177, 324, 597
BstACI	GRCGYC	1 cut(s)	984
BstC8I	GCNNGC	2 cut(s)	197, 1124
BstDEI	CTNAG	3 cut(s)	349, 459, 725
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	6 cut(s)	94, 144, 694, 761, 1245, 1249
BstKTI	GATC	6 cut(s)	62, 114, 254, 771, 838, 1086
BstMAI	GTCTC	2 cut(s)	352, 1104
BstMBI	GATC	6 cut(s)	59, 111, 251, 768, 835, 1083
BstMWI	GCNNNNNNNGC	2 cut(s)	743, 809
BstNI	CCWGG	1 cut(s)	577
BstNSI	RCATGY	1 cut(s)	1209
BstSCI	CCNGG	2 cut(s)	575, 764
BstSFI	CTRYAG	1 cut(s)	368
BstV2I	GAAGAC	2 cut(s)	1158, 1188
BstX2I	RGATCY	2 cut(s)	111, 768
BstYI	RGATCY	2 cut(s)	111, 768
Bsu15I	ATCGAT	1 cut(s)	234
BsuI	GTATCC	2 cut(s)	392, 1196
BsuRI	GGCC	1 cut(s)	36
BsuTUI	ATCGAT	1 cut(s)	234
BtgI	CCRYGG	1 cut(s)	312
BtgZI	GCGATG	1 cut(s)	596
BtrI	CACGTC	1 cut(s)	1258
BtsCI	GGATG	6 cut(s)	94, 144, 694, 761, 1245, 1249
BtsIMutI	CAGTG	3 cut(s)	342, 817, 1047
BveI	ACCTGC	1 cut(s)	515
Cac8I	GCNNGC	2 cut(s)	197, 1124
CciI	TCATGA	2 cut(s)	916, 961
Cfr10I	RCCGGY	1 cut(s)	656
Cfr13I	GGNCC	1 cut(s)	34
ClaI	ATCGAT	1 cut(s)	234
Csp6I	GTAC	3 cut(s)	152, 472, 603
CspAI	ACCGGT	1 cut(s)	656
CviAII	CATG	9 cut(s)	313, 738, 917, 962, 1060, 1206, 1217, 1236, 1262
CviQI	GTAC	3 cut(s)	152, 472, 603
DdeI	CTNAG	3 cut(s)	349, 459, 725
DpnI	GATC	6 cut(s)	61, 113, 253, 770, 837, 1085
DpnII	GATC	6 cut(s)	59, 111, 251, 768, 835, 1083
DraI	TTTAAA	1 cut(s)	480
DriI	GACNNNNNGTC	1 cut(s)	557
Eam1104I	CTCTTC	4 cut(s)	78, 177, 324, 597
Eam1105I	GACNNNNNGTC	1 cut(s)	557
EarI	CTCTTC	4 cut(s)	78, 177, 324, 597
Eco130I	CCWWGG	2 cut(s)	200, 312
Eco57I	CTGAAG	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	575
EcoT14I	CCWWGG	2 cut(s)	200, 312
ErhI	CCWWGG	2 cut(s)	200, 312
Esp3I	CGTCTC	1 cut(s)	1104
FaeI	CATG	9 cut(s)	316, 741, 920, 965, 1063, 1209, 1220, 1239, 1265
FaqI	GGGAC	2 cut(s)	207, 388
FatI	CATG	9 cut(s)	312, 737, 916, 961, 1059, 1205, 1216, 1235, 1261
FokI	GGATG	6 cut(s)	81, 131, 701, 748, 1252, 1256
FspBI	CTAG	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	36
HapII	CCGG	2 cut(s)	657, 765
Hin1I	GRCGYC	1 cut(s)	984
Hin1II	CATG	9 cut(s)	316, 741, 920, 965, 1063, 1209, 1220, 1239, 1265
HincII	GTYRAC	1 cut(s)	1222
HindII	GTYRAC	1 cut(s)	1222
HpaII	CCGG	2 cut(s)	657, 765
HphI	GGTGA	3 cut(s)	646, 671, 875
Hpy166II	GTNNAC	2 cut(s)	868, 1222
Hpy188I	TCNGA	8 cut(s)	177, 256, 339, 500, 785, 809, 840, 1255
Hpy188III	TCNNGA	8 cut(s)	326, 562, 686, 917, 962, 988, 1018, 1105
Hpy8I	GTNNAC	2 cut(s)	868, 1222
HpyAV	CCTTC	3 cut(s)	538, 991, 1156
HpyCH4III	ACNGT	4 cut(s)	346, 476, 1034, 1042
HpyCH4IV	ACGT	3 cut(s)	984, 1193, 1257
HpyCH4V	TGCA	8 cut(s)	195, 510, 641, 761, 817, 909, 944, 1261
HpyF10VI	GCNNNNNNNGC	2 cut(s)	743, 809
HpyF3I	CTNAG	3 cut(s)	349, 459, 725
HpySE526I	ACGT	3 cut(s)	984, 1193, 1257
Hsp92I	GRCGYC	1 cut(s)	984
Hsp92II	CATG	9 cut(s)	316, 741, 920, 965, 1063, 1209, 1220, 1239, 1265
KpnI	GGTACC	1 cut(s)	606
Kzo9I	GATC	6 cut(s)	59, 111, 251, 768, 835, 1083
LguI	GCTCTTC	1 cut(s)	597
LmnI	GCTCC	3 cut(s)	809, 840, 900
LweI	GCATC	4 cut(s)	153, 226, 326, 770
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	3 cut(s)	984, 1193, 1257
MaeIII	GTNAC	2 cut(s)	571, 652
MalI	GATC	6 cut(s)	61, 113, 253, 770, 837, 1085
MbiI	CCGCTC	1 cut(s)	895
MboI	GATC	6 cut(s)	59, 111, 251, 768, 835, 1083
MboII	GAAGA	7 cut(s)	95, 164, 341, 584, 1127, 1163, 1188
MflI	RGATCY	2 cut(s)	111, 768
MluCI	AATT	8 cut(s)	213, 227, 376, 419, 441, 481, 519, 714
MlyI	GAGTC	2 cut(s)	701, 730
MroXI	GAANNNNTTC	2 cut(s)	171, 1001
MseI	TTAA	5 cut(s)	216, 444, 479, 540, 1079
MspA1I	CMGCKG	1 cut(s)	708
MspI	CCGG	2 cut(s)	657, 765
MspR9I	CCNGG	2 cut(s)	577, 766
MvaI	CCWGG	1 cut(s)	577
MwoI	GCNNNNNNNGC	2 cut(s)	743, 809
NciI	CCSGG	1 cut(s)	766
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	6 cut(s)	59, 111, 251, 768, 835, 1083
NlaIII	CATG	9 cut(s)	316, 741, 920, 965, 1063, 1209, 1220, 1239, 1265
NlaIV	GGNNCC	3 cut(s)	35, 604, 1048
NmuCI	GTSAC	2 cut(s)	571, 652
NspI	RCATGY	1 cut(s)	1209
PagI	TCATGA	2 cut(s)	916, 961
PaqCI	CACCTGC	1 cut(s)	515
PciSI	GCTCTTC	1 cut(s)	597
PdmI	GAANNNNTTC	2 cut(s)	171, 1001
PfeI	GAWTC	9 cut(s)	167, 257, 334, 356, 565, 626, 823, 1027, 1063
PfoI	TCCNGGA	1 cut(s)	764
PinAI	ACCGGT	1 cut(s)	656
PleI	GAGTC	2 cut(s)	700, 729
PpsI	GAGTC	2 cut(s)	700, 729
Psp6I	CCWGG	1 cut(s)	575
PspGI	CCWGG	1 cut(s)	575
PspN4I	GGNNCC	3 cut(s)	35, 604, 1048
PspPI	GGNCC	1 cut(s)	34
PsuI	RGATCY	2 cut(s)	111, 768
PvuII	CAGCTG	1 cut(s)	708
RsaI	GTAC	3 cut(s)	153, 473, 604
RsaNI	GTAC	3 cut(s)	152, 472, 603
SapI	GCTCTTC	1 cut(s)	597
SaqAI	TTAA	5 cut(s)	216, 444, 479, 540, 1079
Sau3AI	GATC	6 cut(s)	59, 111, 251, 768, 835, 1083
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	2 cut(s)	701, 730
ScrFI	CCNGG	2 cut(s)	577, 766
SfaNI	GCATC	4 cut(s)	153, 226, 326, 770
SfcI	CTRYAG	1 cut(s)	368
SgrAI	CRCCGGYG	1 cut(s)	656
SmlI	CTYRAG	2 cut(s)	139, 828
SmoI	CTYRAG	2 cut(s)	139, 828
Sse9I	AATT	8 cut(s)	213, 227, 376, 419, 441, 481, 519, 714
SsiI	CCGC	2 cut(s)	893, 976
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	2 cut(s)	575, 764
StyI	CCWWGG	2 cut(s)	200, 312
TaaI	ACNGT	4 cut(s)	346, 476, 1034, 1042
TaiI	ACGT	3 cut(s)	987, 1196, 1260
TaqI	TCGA	1 cut(s)	234
TasI	AATT	8 cut(s)	213, 227, 376, 419, 441, 481, 519, 714
TfiI	GAWTC	9 cut(s)	167, 257, 334, 356, 565, 626, 823, 1027, 1063
Tru1I	TTAA	5 cut(s)	216, 444, 479, 540, 1079
Tru9I	TTAA	5 cut(s)	216, 444, 479, 540, 1079
TscAI	CASTG	3 cut(s)	349, 824, 1047
TseFI	GTSAC	2 cut(s)	571, 652
Tsp45I	GTSAC	2 cut(s)	571, 652
TspDTI	ATGAA	4 cut(s)	220, 639, 950, 1260
TspRI	CASTG	3 cut(s)	349, 824, 1047
XapI	RAATTY	3 cut(s)	227, 419, 714
XceI	RCATGY	1 cut(s)	1209
XmnI	GAANNNNTTC	2 cut(s)	171, 1001
XspI	CTAG	1 cut(s)	47
ZraI	GACGTC	1 cut(s)	985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.