Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001689

Physical Location & Seq

Genomic Coordinates Forward (+)

49582600 .. 49583457

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20278

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTTTGGTCACCCAGCCTTAAATTCTCCAAAGAATTGTGTCAAGTTTCTGGAATTTAAAAATGGTAAGAGTGGCATAGGAGAGTACAGCTTAAGCTGCTGGGCTAGTGACATCAAAGCCACCTGCAATGGTCTAATATTGCTTGACAACAATTTGAAGAAGGGAGGAGTAATAGTCTTGAATCCTGTGACTAAGAAGGTGATTGCACTTCCTGTGGGTACCTTGTGTAACCATCCACATGAAGAATCATATGGATTTGCAATGAGTGATGTAACTGGAGAGTATAAAGTAGTCCACTTGGTTTTGGATCAGTTGGGGTTTGCTTGCTGTGAGATATTTAGCCTCTATAAAAAAACATGGCGAGACGTCAATGGTCCTTCAATCGAGCTCGTTGATAATGGAGGGTTTGGACATGTACCTGTTTCAGCAATCGGAGCTTTGCACTGGCCTTTTTATCGGAGCGATTACGTAGTGTCCATGGAAGTTGATGAGGAGAAGTTTCACCATATAGAGCTCCCCAAAAGTTGCACAACTCATGATAGGATTATTGAAATTTGTGGCTGTTTAGGTTTTGTCACTCATGAGGACATGAACCACATTGACATTTGGATCTTGACGAGTTTATGTGGGGAAGAGTGGACAAAGAATCATACCATCACAGTGGAAACCACAAGAGACATGGTTCCCCTTTGCAGTTTAAGATTCAAGGGTGATATTATTTTCCATACAAGCGACGGCTCTTTCTATGCTTATGACTTCCAACAGCAACAGATGACAGAGATTATTGGTAAGATTAATAGACTACCATGGTGCCTGCCTCATGTCAATAGCCTTGTTACTTGGGATGCAAGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

285

Amino Acids

32.11

Weight (kDa)

5.75

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	35 - 242	4.7e-19	F-box associated beta propeller domain
FBA_1	PF07734	41 - 248	1.5e-09	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30670 FvH4_5g30670 FvH4_5g30670 FvH4_5g31300
malus_domestica	MD15G1404600.v1.1
prunus_persica	Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1
pyrus_communis	pycom15g36200
rosa_chinensis	RchiOBHm_Chr7g0218801 RchiOBHm_Chr7g0225531 RchiOBHm_Chr7g0226391 RchiOBHm_Chr7g0231221
rosa_laevigata	RLG00000001428 RLG00000001721 RLG00000001808 RLG00000002341
rosa_multiflora	Rmu_sc0003876.1_g000039 Rmu_sc0004426.1_g000001 Rmu_sc0004571.1_g000021 Rmu_sc0012403.1_g000002 Rmu_sc0025113.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229430 Rroxscaffold_3G00233700
rosa_rugosa	Rorug07G0230700 Rorug07G0237000 Rorug07G0265200
rosa_samantha	Rh7AG321300 Rh7AG322200 Rh7AG372900 Rh7AG385100 Rh7AG418400 Rh7BG365200 Rh7BG371000 Rh7BG394100 Rh7CG337800 Rh7CG391100 Rh7CG404500 Rh7CG438200 Rh7DG376000 Rh7DG384200 Rh7DG412400
rosa_wichuraiana	Rw7G031740 Rw7G032190 Rw7G032350 Rw7G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	131
AatII	GACGTC	1 cut(s)	369
Acc36I	ACCTGC	1 cut(s)	131
Acc65I	GGTACC	1 cut(s)	218
AccB1I	GGYRCC	2 cut(s)	218, 810
AclWI	GGATC	2 cut(s)	315, 617
AcsI	RAATTY	3 cut(s)	22, 53, 552
AcyI	GRCGYC	1 cut(s)	366
AfaI	GTAC	3 cut(s)	86, 220, 417
AflII	CTTAAG	1 cut(s)	91
AflIII	ACRYGT	1 cut(s)	412
AgsI	TTSAA	5 cut(s)	157, 181, 381, 551, 706
AluBI	AGCT	5 cut(s)	90, 96, 388, 437, 514
AluI	AGCT	5 cut(s)	90, 96, 388, 437, 514
Alw21I	GWGCWC	2 cut(s)	390, 516
Alw26I	GTCTC	2 cut(s)	357, 669
AlwI	GGATC	2 cut(s)	315, 617
AoxI	GGCC	1 cut(s)	446
ApeKI	GCWGC	1 cut(s)	96
ApoI	RAATTY	3 cut(s)	22, 53, 552
AseI	ATTAAT	1 cut(s)	795
Asp718I	GGTACC	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	374
AsuHPI	GGTGA	3 cut(s)	211, 494, 722
AvaII	GGWCC	1 cut(s)	374
BanI	GGYRCC	2 cut(s)	218, 810
BanII	GRGCYC	2 cut(s)	390, 516
Bbv12I	GWGCWC	2 cut(s)	390, 516
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	2 cut(s)	240, 662
BceAI	ACGGC	1 cut(s)	751
BcoDI	GTCTC	2 cut(s)	357, 669
BfaI	CTAG	1 cut(s)	105
BfrI	CTTAAG	1 cut(s)	91
BfuAI	ACCTGC	1 cut(s)	131
BisI	GCNGC	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	3 cut(s)	220, 684, 812
BmsI	GCATC	1 cut(s)	835
BpmI	CTGGAG	1 cut(s)	297
BsaAI	YACGTR	1 cut(s)	469
BsaHI	GRCGYC	1 cut(s)	366
BsaJI	CCNNGG	2 cut(s)	477, 806
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bse1I	ACTGG	2 cut(s)	280, 449
Bse3DI	GCAATG	2 cut(s)	133, 267
BseDI	CCNNGG	2 cut(s)	477, 806
BseGI	GGATG	2 cut(s)	232, 850
BseMI	GCAATG	2 cut(s)	133, 267
BseNI	ACTGG	2 cut(s)	280, 449
BseRI	GAGGAG	2 cut(s)	180, 506
BseXI	GCAGC	1 cut(s)	83
BseYI	CCCAGC	2 cut(s)	13, 99
BshFI	GGCC	1 cut(s)	448
BshNI	GGYRCC	2 cut(s)	218, 810
BsiHKAI	GWGCWC	2 cut(s)	390, 516
BsmAI	GTCTC	2 cut(s)	357, 669
BsmBI	CGTCTC	1 cut(s)	357
BsnI	GGCC	1 cut(s)	448
Bsp1286I	GDGCHC	2 cut(s)	390, 516
Bsp143I	GATC	2 cut(s)	307, 609
Bsp19I	CCATGG	2 cut(s)	477, 806
BspANI	GGCC	1 cut(s)	448
BspHI	TCATGA	2 cut(s)	535, 580
BspLI	GGNNCC	3 cut(s)	220, 684, 812
BspMI	ACCTGC	1 cut(s)	131
BspPI	GGATC	2 cut(s)	315, 617
BspT107I	GGYRCC	2 cut(s)	218, 810
BspTI	CTTAAG	1 cut(s)	91
BsrDI	GCAATG	2 cut(s)	133, 267
BsrI	ACTGG	2 cut(s)	280, 449
BssECI	CCNNGG	2 cut(s)	477, 806
BssMI	GATC	2 cut(s)	307, 609
BssNI	GRCGYC	1 cut(s)	366
BssT1I	CCWWGG	2 cut(s)	477, 806
Bst4CI	ACNGT	1 cut(s)	661
Bst6I	CTCTTC	1 cut(s)	627
BstACI	GRCGYC	1 cut(s)	366
BstAFI	CTTAAG	1 cut(s)	91
BstBAI	YACGTR	1 cut(s)	469
BstC8I	GCNNGC	2 cut(s)	325, 815
BstDEI	CTNAG	1 cut(s)	192
BstDSI	CCRYGG	2 cut(s)	477, 806
BstEII	GGTNACC	1 cut(s)	8
BstF5I	GGATG	2 cut(s)	232, 850
BstKTI	GATC	2 cut(s)	310, 612
BstMAI	GTCTC	2 cut(s)	357, 669
BstMBI	GATC	2 cut(s)	307, 609
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 434
BstNSI	RCATGY	1 cut(s)	416
BstPI	GGTNACC	1 cut(s)	8
BstSNI	TACGTA	1 cut(s)	469
BstV1I	GCAGC	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	609
BstXI	CCANNNNNNTGG	1 cut(s)	661
BstYI	RGATCY	1 cut(s)	609
BsuRI	GGCC	1 cut(s)	448
BtgI	CCRYGG	2 cut(s)	477, 806
BtsCI	GGATG	2 cut(s)	232, 850
BtsIMutI	CAGTG	2 cut(s)	442, 666
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	2 cut(s)	325, 815
CciI	TCATGA	2 cut(s)	535, 580
Cfr13I	GGNCC	1 cut(s)	374
Csp6I	GTAC	3 cut(s)	85, 219, 416
CviQI	GTAC	3 cut(s)	85, 219, 416
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	2 cut(s)	309, 611
DpnII	GATC	2 cut(s)	307, 609
DraI	TTTAAA	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	627
EarI	CTCTTC	1 cut(s)	627
Ecl136II	GAGCTC	2 cut(s)	388, 514
Eco105I	TACGTA	1 cut(s)	469
Eco130I	CCWWGG	2 cut(s)	477, 806
Eco24I	GRGCYC	2 cut(s)	390, 516
Eco47I	GGWCC	1 cut(s)	374
Eco53kI	GAGCTC	2 cut(s)	388, 514
Eco91I	GGTNACC	1 cut(s)	8
EcoICRI	GAGCTC	2 cut(s)	388, 514
EcoO65I	GGTNACC	1 cut(s)	8
EcoT14I	CCWWGG	2 cut(s)	477, 806
EcoT38I	GRGCYC	2 cut(s)	390, 516
ErhI	CCWWGG	2 cut(s)	477, 806
Esp3I	CGTCTC	1 cut(s)	357
FauNDI	CATATG	1 cut(s)	250
Fnu4HI	GCNGC	1 cut(s)	97
FokI	GGATG	1 cut(s)	219
FriOI	GRGCYC	2 cut(s)	390, 516
Fsp4HI	GCNGC	1 cut(s)	97
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	1 cut(s)	97
GsaI	CCCAGC	2 cut(s)	17, 103
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	448
Hin1I	GRCGYC	1 cut(s)	366
HinfI	GANTC	4 cut(s)	181, 245, 646, 702
HphI	GGTGA	3 cut(s)	211, 494, 722
Hpy166II	GTNNAC	2 cut(s)	295, 639
Hpy188I	TCNGA	2 cut(s)	434, 459
Hpy188III	TCNNGA	5 cut(s)	50, 178, 536, 581, 613
Hpy8I	GTNNAC	2 cut(s)	295, 639
Hpy99I	CGWCG	1 cut(s)	737
HpyAV	CCTTC	3 cut(s)	154, 190, 387
HpyCH4III	ACNGT	1 cut(s)	661
HpyCH4IV	ACGT	2 cut(s)	366, 468
HpyCH4V	TGCA	7 cut(s)	126, 206, 260, 442, 528, 693, 848
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 434
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	2 cut(s)	366, 468
Hsp92I	GRCGYC	1 cut(s)	366
KpnI	GGTACC	1 cut(s)	222
Kzo9I	GATC	2 cut(s)	307, 609
LmnI	GCTCC	3 cut(s)	434, 459, 519
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	1 cut(s)	835
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	2 cut(s)	366, 468
MaeIII	GTNAC	7 cut(s)	8, 107, 187, 227, 271, 574, 835
MalI	GATC	2 cut(s)	309, 611
MboI	GATC	2 cut(s)	307, 609
MboII	GAAGA	3 cut(s)	169, 254, 644
MflI	RGATCY	1 cut(s)	609
MhlI	GDGCHC	2 cut(s)	390, 516
MluCI	AATT	5 cut(s)	22, 34, 53, 151, 552
MmeI	TCCRAC	1 cut(s)	784
MnlI	CCTC	6 cut(s)	158, 353, 395, 484, 577, 828
MseI	TTAA	5 cut(s)	20, 57, 92, 698, 795
MslI	CAYNNNNRTG	2 cut(s)	237, 659
MspCI	CTTAAG	1 cut(s)	91
MwoI	GCNNNNNNNGC	2 cut(s)	96, 434
NcoI	CCATGG	2 cut(s)	477, 806
NdeI	CATATG	1 cut(s)	250
NdeII	GATC	2 cut(s)	307, 609
NlaIV	GGNNCC	3 cut(s)	220, 684, 812
NmuCI	GTSAC	4 cut(s)	8, 107, 187, 574
NspI	RCATGY	1 cut(s)	416
PagI	TCATGA	2 cut(s)	535, 580
PaqCI	CACCTGC	1 cut(s)	131
PciI	ACATGT	1 cut(s)	412
PfeI	GAWTC	4 cut(s)	181, 245, 646, 702
PkrI	GCNGC	1 cut(s)	98
Ppu21I	YACGTR	1 cut(s)	469
PscI	ACATGT	1 cut(s)	412
PshBI	ATTAAT	1 cut(s)	795
Psp124BI	GAGCTC	2 cut(s)	390, 516
PspEI	GGTNACC	1 cut(s)	8
PspFI	CCCAGC	2 cut(s)	13, 99
PspN4I	GGNNCC	3 cut(s)	220, 684, 812
PspPI	GGNCC	1 cut(s)	374
PsuI	RGATCY	1 cut(s)	609
RsaI	GTAC	3 cut(s)	86, 220, 417
RsaNI	GTAC	3 cut(s)	85, 219, 416
RseI	CAYNNNNRTG	2 cut(s)	237, 659
SacI	GAGCTC	2 cut(s)	390, 516
SaqAI	TTAA	5 cut(s)	20, 57, 92, 698, 795
SatI	GCNGC	1 cut(s)	97
Sau3AI	GATC	2 cut(s)	307, 609
Sau96I	GGNCC	1 cut(s)	374
SduI	GDGCHC	2 cut(s)	390, 516
SfaNI	GCATC	1 cut(s)	835
SinI	GGWCC	1 cut(s)	374
SmiMI	CAYNNNNRTG	2 cut(s)	237, 659
SmlI	CTYRAG	1 cut(s)	91
SmoI	CTYRAG	1 cut(s)	91
SnaBI	TACGTA	1 cut(s)	469
Sse9I	AATT	5 cut(s)	22, 34, 53, 151, 552
SspI	AATATT	1 cut(s)	138
SspMI	CTAG	1 cut(s)	105
SstI	GAGCTC	2 cut(s)	390, 516
StyI	CCWWGG	2 cut(s)	477, 806
TaaI	ACNGT	1 cut(s)	661
TaiI	ACGT	2 cut(s)	369, 471
TaqI	TCGA	1 cut(s)	384
TasI	AATT	5 cut(s)	22, 34, 53, 151, 552
TatI	WGTACW	1 cut(s)	84
TfiI	GAWTC	4 cut(s)	181, 245, 646, 702
Tru1I	TTAA	5 cut(s)	20, 57, 92, 698, 795
Tru9I	TTAA	5 cut(s)	20, 57, 92, 698, 795
TscAI	CASTG	2 cut(s)	449, 666
TseFI	GTSAC	4 cut(s)	8, 107, 187, 574
TseI	GCWGC	1 cut(s)	96
Tsp45I	GTSAC	4 cut(s)	8, 107, 187, 574
TspDTI	ATGAA	2 cut(s)	255, 605
TspRI	CASTG	2 cut(s)	449, 666
Vha464I	CTTAAG	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	374
VspI	ATTAAT	1 cut(s)	795
XapI	RAATTY	3 cut(s)	22, 53, 552
XceI	RCATGY	1 cut(s)	416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	676
XspI	CTAG	1 cut(s)	105
ZraI	GACGTC	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.