Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001689

Physical Location & Seq

Genomic Coordinates Forward (+)

51388544 .. 51394122

Gene Structure 5579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G034620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGATGGCAAAATCAATAGGTAGCAAGAACTGGGGCCTATTGAGGCTAGTGGAGGAAAGATCATTGAGCAAGAAAACAGAGGAAGAGAAAAAACATCCACAAGAAACACAGATCCCTTATCTCCCTGAAGATTGTATCTCAAGCATCCTTGTACGACTTCCTATTGAATCTCTTCAGAGGTCAAGTTTTGTGTGCAAGCCTTGGTTTAGCATAATTAAAAGTCCCAAATTCATCGATGCTCATCTCAACCGATCTGAATCTGTTTTGATTTTTCTATCGCCAATAAGAGAGGAAATGTCATATTCTTTTTCCATGGCATCTGTTCCAGAAGAGAATCCGAATACCGTCACAGTTGAATCAAAACTTCTACCGCCAAATTGTATCCCCATTTTCAGCAACCCGTCCCTAAACTCTACAAAATTTTCTGTCCAGTTTCTTGCAATTAAAAATGGTAAGACTGAGATAGGAGGGTACAGTTTAAATTGCTTGGGAAGTATCAGAGCCACCTGCAATGGTCTAATTTTACTTGATAACAAAGTTAAGAAGGGAGGACTTATAGTCTTGAATCCTGTGACCAGGAAGCTGATTGCTCTTCCTCGTGGTACCTTACATCGCCCATATAATGAATCCTATGGTTTTGCATTGAGTGATGTCACTGGTGAATATAAAATAGTCCATTTGTTTCGGGATGACGGGTTTGTCAGCTGTGAGATTTTGAGTCTTAGAAAAAAGGCATGGAGAGGGGTCAATGGTCCTGCATTCGGGCCCTTTGGTTGGTTCGGATATGCACCTGTTTCAGCAATTGGAGCTTTGCACTGGATTCCTCAAGTTGATCGGAGCGATTACATTGTTTCGGTGGAAGTCCACATGGAGAAATTTCACCAAATAATGCTCCCCAAAAGTTGCAGAACTCATGACAGGATTATTGAAATGGGAGGCGCATTGGGTTTTGTCATTCATGAGGAGATAAACCGCATTGACGTCTGGATTTTGAAGGGTTTCTGTGGGGAAGTCTGGACAAAGAATCACAGTATCACAGTGGGTTCCATTATAGACATGGTTCCCTTTTTCAGTTTAAGGATCAAGGGAGATATTATTTTCAAGAGAGACGAAGATGGCTCGCTATATGCTTATGACTTTCAGCAAGAAGACTTGACGAAGGTTGAGATGGTAGAGGAATGTATCCCAACGTCTTCTGCTACATGCCTACCTCATGTCAATAGCCTTGTATCATGGATCGATGAAAGTTCGGACGTGCATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

421

Amino Acids

47.41

Weight (kDa)

6.48

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	41 - 77	1.7e-07	F-box domain
FBA_3	PF08268	142 - 390	1.4e-19	F-box associated beta propeller domain
FBA_1	PF07734	169 - 410	5.9e-11	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30670 FvH4_5g30670 FvH4_5g30670 FvH4_5g31300
malus_domestica	MD15G1404600.v1.1
prunus_persica	Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1
pyrus_communis	pycom15g36200
rosa_chinensis	RchiOBHm_Chr7g0218801 RchiOBHm_Chr7g0225531 RchiOBHm_Chr7g0226391 RchiOBHm_Chr7g0231221
rosa_laevigata	RLG00000001428 RLG00000001721 RLG00000001808 RLG00000002341
rosa_multiflora	Rmu_sc0003876.1_g000039 Rmu_sc0004426.1_g000001 Rmu_sc0004571.1_g000021 Rmu_sc0012403.1_g000002 Rmu_sc0025113.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229430 Rroxscaffold_3G00233700
rosa_rugosa	Rorug07G0230700 Rorug07G0237000 Rorug07G0265200
rosa_samantha	Rh7AG321300 Rh7AG322200 Rh7AG372900 Rh7AG385100 Rh7AG418400 Rh7BG365200 Rh7BG371000 Rh7BG394100 Rh7CG337800 Rh7CG391100 Rh7CG404500 Rh7CG438200 Rh7DG376000 Rh7DG384200 Rh7DG412400
rosa_wichuraiana	Rw7G031740 Rw7G032190 Rw7G032350 Rw7G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	515
AasI	GACNNNNNNGTC	1 cut(s)	698
AatII	GACGTC	1 cut(s)	984
Acc36I	ACCTGC	1 cut(s)	515
Acc65I	GGTACC	1 cut(s)	602
AccB1I	GGYRCC	1 cut(s)	602
AciI	CCGC	2 cut(s)	371, 973
AclWI	GGATC	3 cut(s)	106, 1088, 1244
AcsI	RAATTY	3 cut(s)	227, 419, 875
AcuI	CTGAAG	2 cut(s)	147, 158
AcyI	GRCGYC	1 cut(s)	981
AfaI	GTAC	3 cut(s)	153, 473, 604
AfiI	CCNNNNNNNGG	2 cut(s)	761, 774
AgsI	TTSAA	6 cut(s)	167, 356, 565, 929, 994, 1102
AhdI	GACNNNNNGTC	1 cut(s)	557
AjiI	CACGTC	1 cut(s)	1255
AjnI	CCWGG	1 cut(s)	575
AluBI	AGCT	3 cut(s)	583, 705, 809
AluI	AGCT	3 cut(s)	583, 705, 809
Alw26I	GTCTC	1 cut(s)	1101
AlwI	GGATC	3 cut(s)	106, 1088, 1244
AoxI	GGCC	2 cut(s)	34, 764
ApaI	GGGCCC	1 cut(s)	768
ApoI	RAATTY	3 cut(s)	227, 419, 875
Asp700I	GAANNNNTTC	2 cut(s)	171, 998
Asp718I	GGTACC	1 cut(s)	602
AspLEI	GCGC	1 cut(s)	941
AspS9I	GGNCC	4 cut(s)	34, 752, 764, 765
AsuHPI	GGTGA	2 cut(s)	671, 872
AvaII	GGWCC	1 cut(s)	752
BaeGI	GKGCMC	1 cut(s)	768
BanI	GGYRCC	1 cut(s)	602
BanII	GRGCYC	1 cut(s)	768
BauI	CACGAG	1 cut(s)	597
BbsI	GAAGAC	2 cut(s)	1155, 1185
BccI	CCATC	2 cut(s)	1109, 1162
BciT130I	CCWGG	1 cut(s)	577
BciVI	GTATCC	2 cut(s)	392, 1193
BcoDI	GTCTC	1 cut(s)	1101
BfaI	CTAG	1 cut(s)	47
BfuAI	ACCTGC	1 cut(s)	515
BfuI	GTATCC	2 cut(s)	392, 1193
Bme1390I	CCNGG	1 cut(s)	577
Bme18I	GGWCC	1 cut(s)	752
BmeRI	GACNNNNNGTC	1 cut(s)	557
BmgBI	CACGTC	1 cut(s)	1255
BmgT120I	GGNCC	4 cut(s)	34, 752, 764, 765
BmiI	GGNNCC	5 cut(s)	35, 604, 766, 1045, 1062
BmrFI	CCNGG	1 cut(s)	577
BmrI	ACTGGG	1 cut(s)	40
BmsI	GCATC	3 cut(s)	153, 226, 326
BmuI	ACTGGG	1 cut(s)	40
BpiI	GAAGAC	2 cut(s)	1155, 1185
BpuEI	CTTGAG	2 cut(s)	124, 810
Bsa29I	ATCGAT	2 cut(s)	234, 1239
BsaBI	GATNNNNATC	2 cut(s)	240, 256
BsaHI	GRCGYC	1 cut(s)	981
BsaJI	CCNNGG	2 cut(s)	200, 312
Bsc4I	CCNNNNNNNGG	2 cut(s)	761, 774
Bse1I	ACTGG	4 cut(s)	35, 430, 661, 821
Bse3DI	GCAATG	1 cut(s)	517
Bse8I	GATNNNNATC	2 cut(s)	240, 256
BseBI	CCWGG	1 cut(s)	577
BseCI	ATCGAT	2 cut(s)	234, 1239
BseDI	CCNNGG	2 cut(s)	200, 312
BseGI	GGATG	3 cut(s)	94, 144, 694
BseJI	GATNNNNATC	2 cut(s)	240, 256
BseLI	CCNNNNNNNGG	2 cut(s)	761, 774
BseMI	GCAATG	1 cut(s)	517
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	4 cut(s)	35, 430, 661, 821
BseRI	GAGGAG	1 cut(s)	977
BseSI	GKGCMC	1 cut(s)	768
BshFI	GGCC	2 cut(s)	36, 766
BshNI	GGYRCC	1 cut(s)	602
BshVI	ATCGAT	2 cut(s)	234, 1239
BslFI	GGGAC	2 cut(s)	207, 388
BslI	CCNNNNNNNGG	2 cut(s)	761, 774
BsmAI	GTCTC	1 cut(s)	1101
BsmBI	CGTCTC	1 cut(s)	1101
BsmFI	GGGAC	2 cut(s)	207, 388
BsmI	GAATGC	1 cut(s)	758
BsnI	GGCC	2 cut(s)	36, 766
Bsp120I	GGGCCC	1 cut(s)	764
Bsp1286I	GDGCHC	1 cut(s)	768
Bsp143I	GATC	6 cut(s)	59, 111, 251, 832, 1080, 1236
Bsp19I	CCATGG	1 cut(s)	312
BspACI	CCGC	2 cut(s)	371, 973
BspANI	GGCC	2 cut(s)	36, 766
BspCNI	CTCAG	1 cut(s)	451
BspDI	ATCGAT	2 cut(s)	234, 1239
BspHI	TCATGA	2 cut(s)	913, 958
BspLI	GGNNCC	5 cut(s)	35, 604, 766, 1045, 1062
BspMI	ACCTGC	1 cut(s)	515
BspPI	GGATC	3 cut(s)	106, 1088, 1244
BspQI	GCTCTTC	1 cut(s)	597
BspT107I	GGYRCC	1 cut(s)	602
BsrDI	GCAATG	1 cut(s)	517
BsrI	ACTGG	4 cut(s)	35, 430, 661, 821
BssECI	CCNNGG	2 cut(s)	200, 312
BssMI	GATC	6 cut(s)	59, 111, 251, 832, 1080, 1236
BssNI	GRCGYC	1 cut(s)	981
BssSI	CACGAG	1 cut(s)	597
BssT1I	CCWWGG	2 cut(s)	200, 312
Bst2BI	CACGAG	1 cut(s)	597
Bst2UI	CCWGG	1 cut(s)	577
Bst4CI	ACNGT	5 cut(s)	346, 352, 476, 1031, 1039
Bst6I	CTCTTC	4 cut(s)	78, 177, 324, 597
BstACI	GRCGYC	1 cut(s)	981
BstC8I	GCNNGC	2 cut(s)	197, 1121
BstDEI	CTNAG	2 cut(s)	459, 722
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	3 cut(s)	94, 144, 694
BstHHI	GCGC	1 cut(s)	941
BstKTI	GATC	6 cut(s)	62, 114, 254, 835, 1083, 1239
BstMAI	GTCTC	1 cut(s)	1101
BstMBI	GATC	6 cut(s)	59, 111, 251, 832, 1080, 1236
BstMWI	GCNNNNNNNGC	1 cut(s)	806
BstNI	CCWGG	1 cut(s)	577
BstNSI	RCATGY	1 cut(s)	1206
BstSCI	CCNGG	1 cut(s)	575
BstSLI	GKGCMC	1 cut(s)	768
BstV2I	GAAGAC	2 cut(s)	1155, 1185
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
Bsu15I	ATCGAT	2 cut(s)	234, 1239
BsuI	GTATCC	2 cut(s)	392, 1193
BsuRI	GGCC	2 cut(s)	36, 766
BsuTUI	ATCGAT	2 cut(s)	234, 1239
BtgI	CCRYGG	1 cut(s)	312
BtgZI	GCGATG	1 cut(s)	596
BtrI	CACGTC	1 cut(s)	1255
BtsCI	GGATG	3 cut(s)	94, 144, 694
BtsIMutI	CAGTG	3 cut(s)	654, 814, 1044
BveI	ACCTGC	1 cut(s)	515
Cac8I	GCNNGC	2 cut(s)	197, 1121
CciI	TCATGA	2 cut(s)	913, 958
CfoI	GCGC	1 cut(s)	941
Cfr13I	GGNCC	4 cut(s)	34, 752, 764, 765
ClaI	ATCGAT	2 cut(s)	234, 1239
Csp6I	GTAC	3 cut(s)	152, 472, 603
CviQI	GTAC	3 cut(s)	152, 472, 603
DdeI	CTNAG	2 cut(s)	459, 722
DpnI	GATC	6 cut(s)	61, 113, 253, 834, 1082, 1238
DpnII	GATC	6 cut(s)	59, 111, 251, 832, 1080, 1236
DraI	TTTAAA	1 cut(s)	480
DrdI	GACNNNNNNGTC	1 cut(s)	698
DriI	GACNNNNNGTC	1 cut(s)	557
DseDI	GACNNNNNNGTC	1 cut(s)	698
Eam1104I	CTCTTC	4 cut(s)	78, 177, 324, 597
Eam1105I	GACNNNNNGTC	1 cut(s)	557
EarI	CTCTTC	4 cut(s)	78, 177, 324, 597
Eco130I	CCWWGG	2 cut(s)	200, 312
Eco24I	GRGCYC	1 cut(s)	768
Eco47I	GGWCC	1 cut(s)	752
Eco57I	CTGAAG	2 cut(s)	147, 158
EcoO109I	RGGNCCY	2 cut(s)	34, 765
EcoRII	CCWGG	1 cut(s)	575
EcoT14I	CCWWGG	2 cut(s)	200, 312
EcoT38I	GRGCYC	1 cut(s)	768
ErhI	CCWWGG	2 cut(s)	200, 312
Esp3I	CGTCTC	1 cut(s)	1101
FaqI	GGGAC	2 cut(s)	207, 388
FokI	GGATG	3 cut(s)	81, 131, 701
FriOI	GRGCYC	1 cut(s)	768
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	940
HaeIII	GGCC	2 cut(s)	36, 766
HhaI	GCGC	1 cut(s)	941
Hin1I	GRCGYC	1 cut(s)	981
Hin6I	GCGC	1 cut(s)	939
HinP1I	GCGC	1 cut(s)	939
HinfI	GANTC	9 cut(s)	167, 257, 334, 356, 565, 626, 718, 820, 1024
HphI	GGTGA	2 cut(s)	671, 872
Hpy166II	GTNNAC	1 cut(s)	865
Hpy188I	TCNGA	7 cut(s)	177, 256, 339, 500, 782, 837, 1252
Hpy188III	TCNNGA	8 cut(s)	326, 562, 686, 914, 959, 985, 1015, 1102
Hpy8I	GTNNAC	1 cut(s)	865
HpyAV	CCTTC	3 cut(s)	538, 988, 1153
HpyCH4III	ACNGT	5 cut(s)	346, 352, 476, 1031, 1039
HpyCH4IV	ACGT	3 cut(s)	981, 1190, 1254
HpyCH4V	TGCA	9 cut(s)	195, 440, 510, 641, 758, 788, 814, 906, 1258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	806
HpyF3I	CTNAG	2 cut(s)	459, 722
HpySE526I	ACGT	3 cut(s)	981, 1190, 1254
Hsp92I	GRCGYC	1 cut(s)	981
HspAI	GCGC	1 cut(s)	939
KpnI	GGTACC	1 cut(s)	606
Kzo9I	GATC	6 cut(s)	59, 111, 251, 832, 1080, 1236
LguI	GCTCTTC	1 cut(s)	597
LmnI	GCTCC	3 cut(s)	806, 837, 897
LweI	GCATC	3 cut(s)	153, 226, 326
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	3 cut(s)	981, 1190, 1254
MaeIII	GTNAC	3 cut(s)	346, 571, 652
MalI	GATC	6 cut(s)	61, 113, 253, 834, 1082, 1238
MboI	GATC	6 cut(s)	59, 111, 251, 832, 1080, 1236
MboII	GAAGA	8 cut(s)	95, 140, 164, 341, 584, 1124, 1160, 1185
MfeI	CAATTG	1 cut(s)	801
MflI	RGATCY	1 cut(s)	111
MhlI	GDGCHC	1 cut(s)	768
MluCI	AATT	9 cut(s)	213, 227, 376, 419, 441, 481, 519, 801, 875
MlyI	GAGTC	1 cut(s)	727
MroXI	GAANNNNTTC	2 cut(s)	171, 998
MseI	TTAA	5 cut(s)	216, 444, 479, 540, 1076
MspA1I	CMGCKG	1 cut(s)	705
MspR9I	CCNGG	1 cut(s)	577
MunI	CAATTG	1 cut(s)	801
Mva1269I	GAATGC	1 cut(s)	758
MvaI	CCWGG	1 cut(s)	577
MwoI	GCNNNNNNNGC	1 cut(s)	806
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	6 cut(s)	59, 111, 251, 832, 1080, 1236
NlaIV	GGNNCC	5 cut(s)	35, 604, 766, 1045, 1062
NmuCI	GTSAC	3 cut(s)	346, 571, 652
NspI	RCATGY	1 cut(s)	1206
PagI	TCATGA	2 cut(s)	913, 958
PaqCI	CACCTGC	1 cut(s)	515
PciSI	GCTCTTC	1 cut(s)	597
PctI	GAATGC	1 cut(s)	758
PdmI	GAANNNNTTC	2 cut(s)	171, 998
PfeI	GAWTC	8 cut(s)	167, 257, 334, 356, 565, 626, 820, 1024
PleI	GAGTC	1 cut(s)	726
PpsI	GAGTC	1 cut(s)	726
Psp6I	CCWGG	1 cut(s)	575
PspGI	CCWGG	1 cut(s)	575
PspN4I	GGNNCC	5 cut(s)	35, 604, 766, 1045, 1062
PspOMI	GGGCCC	1 cut(s)	764
PspPI	GGNCC	4 cut(s)	34, 752, 764, 765
PsuI	RGATCY	1 cut(s)	111
PvuII	CAGCTG	1 cut(s)	705
RsaI	GTAC	3 cut(s)	153, 473, 604
RsaNI	GTAC	3 cut(s)	152, 472, 603
SapI	GCTCTTC	1 cut(s)	597
SaqAI	TTAA	5 cut(s)	216, 444, 479, 540, 1076
Sau3AI	GATC	6 cut(s)	59, 111, 251, 832, 1080, 1236
Sau96I	GGNCC	4 cut(s)	34, 752, 764, 765
SchI	GAGTC	1 cut(s)	727
ScrFI	CCNGG	1 cut(s)	577
SduI	GDGCHC	1 cut(s)	768
SfaNI	GCATC	3 cut(s)	153, 226, 326
SinI	GGWCC	1 cut(s)	752
SmlI	CTYRAG	2 cut(s)	139, 825
SmoI	CTYRAG	2 cut(s)	139, 825
Sse9I	AATT	9 cut(s)	213, 227, 376, 419, 441, 481, 519, 801, 875
SsiI	CCGC	2 cut(s)	371, 973
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	575
StyI	CCWWGG	2 cut(s)	200, 312
TaaI	ACNGT	5 cut(s)	346, 352, 476, 1031, 1039
TaiI	ACGT	3 cut(s)	984, 1193, 1257
TaqI	TCGA	2 cut(s)	234, 1239
TasI	AATT	9 cut(s)	213, 227, 376, 419, 441, 481, 519, 801, 875
TfiI	GAWTC	8 cut(s)	167, 257, 334, 356, 565, 626, 820, 1024
Tru1I	TTAA	5 cut(s)	216, 444, 479, 540, 1076
Tru9I	TTAA	5 cut(s)	216, 444, 479, 540, 1076
TscAI	CASTG	3 cut(s)	661, 821, 1044
TseFI	GTSAC	3 cut(s)	346, 571, 652
Tsp45I	GTSAC	3 cut(s)	346, 571, 652
TspDTI	ATGAA	4 cut(s)	220, 639, 947, 1257
TspRI	CASTG	3 cut(s)	661, 821, 1044
VpaK11BI	GGWCC	1 cut(s)	752
XapI	RAATTY	3 cut(s)	227, 419, 875
XceI	RCATGY	1 cut(s)	1206
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1054
XmnI	GAANNNNTTC	2 cut(s)	171, 998
XspI	CTAG	1 cut(s)	47
ZraI	GACGTC	1 cut(s)	982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.