Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001689

Physical Location & Seq

Genomic Coordinates Reverse (-)

15498418 .. 15502990

Gene Structure 4573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001428

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGAAAGTCAAGTCAATGATCACAACCATTCTGGTTTTTAAGATGAAAATGAAAACAATTGACTTTGGATTCAGCGGAGACGAAGCCGGCCTTCCTTGTTCTTATTGGGTCTACAAAAAGGAGAAAACTTTTCAGTCTCCAGTGGTCTCATCATCATCAGGCAAGTTACTCAACGCAGAAGGTTGTGAAGTTCAGGTTTTAAGACCTTCAGCCGAAGTTGATGATGGCAAAATCAATAGCAACCCGTCCCTAAACTCTACAAAATTTTCTGTCCAGTTTCTTGCAATTAAAAATGGTAAGACCGAGATAGGAGGGTACAGTTTAAATTGCTTGGGAAGTATCAGAGCCACCTGCAATGGTCTAATTTTACTTGATAACAAAGTTAAGAAGGGAGGACTTATAGTCTTGAATCCTGTGACCAGGAAGCTGATTGCTCTTCCTCTTGGTACCGTACATCGCTCATATAATGAATCCTATGGTTTTGCATTGAGTGATGTCACCGGTGAATATAAAATAGTCCATTTGTTTCGGGATGACGGGTTTGTCAGCTGTGAGATTTTGAGTCTTAGAAAAAAGGCATGGAGAGGGGTCAATGGTCCTGCATTCGGGCCCTTTGGTTGGTTCGGATATGCACCTGTTTCAGCAATTGGAGCTTTGCACTGGATTCCTCAAGTTGATCGGAGCGATTACATTGTTTCGGTGGAAGTCCACAAGGAGAAATTTCACCAAATAATGCTCCCCAAAAGTTGCAGAACTCATGACAGGATTATTGAAATGGGAGGCGCATTGGGTTTTGTCATTCATGAGGAGATAAACCGCATTGACGTCTGGATTTTGAAGGGTTTCTGTGGGGAAGTCTGGACAAAGAATCACAGTATCACAGTGGGTTCCATTATAGACATGATTCCCTATTTCAGTTTAAGGATCAAGGGAGATATTATTTTCAAGAGAGACGAAGATGGCTCGCTATATGCTTATGACTTTCAGCAAGAAGACTTGACGAAGGTTGAGATGGTAGAGGAATGTATCCCAACGTCTTCTGCTACATGCCTACCTCATGTCAACAGCCTTGTGTCATGGATGGATGAAAGTTCGGACGTGCATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

370

Amino Acids

41.12

Weight (kDa)

6.8

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	101 - 338	4.1e-19	F-box associated beta propeller domain
FBA_1	PF07734	116 - 358	3.6e-11	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30670 FvH4_5g30670 FvH4_5g30670 FvH4_5g31300
malus_domestica	MD15G1404600.v1.1
prunus_persica	Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1
pyrus_communis	pycom15g36200
rosa_chinensis	RchiOBHm_Chr7g0218801 RchiOBHm_Chr7g0225531 RchiOBHm_Chr7g0226391 RchiOBHm_Chr7g0231221
rosa_laevigata	RLG00000001428 RLG00000001721 RLG00000001808 RLG00000002341
rosa_multiflora	Rmu_sc0003876.1_g000039 Rmu_sc0004426.1_g000001 Rmu_sc0004571.1_g000021 Rmu_sc0012403.1_g000002 Rmu_sc0025113.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229430 Rroxscaffold_3G00233700
rosa_rugosa	Rorug07G0230700 Rorug07G0237000 Rorug07G0265200
rosa_samantha	Rh7AG321300 Rh7AG322200 Rh7AG372900 Rh7AG385100 Rh7AG418400 Rh7BG365200 Rh7BG371000 Rh7BG394100 Rh7CG337800 Rh7CG391100 Rh7CG404500 Rh7CG438200 Rh7DG376000 Rh7DG384200 Rh7DG412400
rosa_wichuraiana	Rw7G031740 Rw7G032190 Rw7G032350 Rw7G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	359
AasI	GACNNNNNNGTC	1 cut(s)	542
AatII	GACGTC	1 cut(s)	828
Acc36I	ACCTGC	1 cut(s)	359
Acc65I	GGTACC	1 cut(s)	446
AccB1I	GGYRCC	1 cut(s)	446
AccI	GTMKAC	1 cut(s)	111
AciI	CCGC	2 cut(s)	75, 817
AclWI	GGATC	1 cut(s)	932
AcsI	RAATTY	2 cut(s)	263, 719
AcuI	CTGAAG	1 cut(s)	192
AcyI	GRCGYC	1 cut(s)	825
AfaI	GTAC	3 cut(s)	317, 448, 453
AfiI	CCNNNNNNNGG	2 cut(s)	605, 618
AgeI	ACCGGT	1 cut(s)	500
AgsI	TTSAA	4 cut(s)	409, 773, 838, 946
AhdI	GACNNNNNGTC	1 cut(s)	401
AjiI	CACGTC	1 cut(s)	1099
AjnI	CCWGG	1 cut(s)	419
AluBI	AGCT	3 cut(s)	427, 549, 653
AluI	AGCT	3 cut(s)	427, 549, 653
Alw26I	GTCTC	4 cut(s)	72, 141, 151, 945
AlwI	GGATC	1 cut(s)	932
AoxI	GGCC	2 cut(s)	88, 608
ApaI	GGGCCC	1 cut(s)	612
ApoI	RAATTY	2 cut(s)	263, 719
AsiGI	ACCGGT	1 cut(s)	500
Asp700I	GAANNNNTTC	1 cut(s)	842
Asp718I	GGTACC	1 cut(s)	446
AspLEI	GCGC	1 cut(s)	785
AspS9I	GGNCC	3 cut(s)	596, 608, 609
AsuHPI	GGTGA	3 cut(s)	490, 515, 716
AvaII	GGWCC	1 cut(s)	596
BaeGI	GKGCMC	1 cut(s)	612
BanI	GGYRCC	1 cut(s)	446
BanII	GRGCYC	1 cut(s)	612
BbsI	GAAGAC	2 cut(s)	999, 1029
BccI	CCATC	4 cut(s)	218, 953, 1006, 1075
BciT130I	CCWGG	1 cut(s)	421
BciVI	GTATCC	1 cut(s)	1037
BclI	TGATCA	1 cut(s)	18
BcoDI	GTCTC	4 cut(s)	72, 141, 151, 945
BfuAI	ACCTGC	1 cut(s)	359
BfuI	GTATCC	1 cut(s)	1037
Bme1390I	CCNGG	1 cut(s)	421
Bme18I	GGWCC	1 cut(s)	596
BmeRI	GACNNNNNGTC	1 cut(s)	401
BmgBI	CACGTC	1 cut(s)	1099
BmgT120I	GGNCC	3 cut(s)	596, 608, 609
BmiI	GGNNCC	3 cut(s)	448, 610, 889
BmrFI	CCNGG	1 cut(s)	421
BpiI	GAAGAC	2 cut(s)	999, 1029
BpmI	CTGGAG	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	654
BsaHI	GRCGYC	1 cut(s)	825
BsaI	GGTCTC	1 cut(s)	151
BsaWI	WCCGGW	1 cut(s)	500
Bsc4I	CCNNNNNNNGG	2 cut(s)	605, 618
Bse118I	RCCGGY	2 cut(s)	86, 500
Bse1I	ACTGG	3 cut(s)	140, 274, 665
Bse3DI	GCAATG	1 cut(s)	361
BseBI	CCWGG	1 cut(s)	421
BseGI	GGATG	3 cut(s)	538, 1086, 1090
BseLI	CCNNNNNNNGG	2 cut(s)	605, 618
BseMI	GCAATG	1 cut(s)	361
BseNI	ACTGG	3 cut(s)	140, 274, 665
BseRI	GAGGAG	1 cut(s)	821
BseSI	GKGCMC	1 cut(s)	612
BshFI	GGCC	2 cut(s)	90, 610
BshNI	GGYRCC	1 cut(s)	446
BshTI	ACCGGT	1 cut(s)	500
BsiSI	CCGG	2 cut(s)	87, 501
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	2 cut(s)	605, 618
BsmAI	GTCTC	4 cut(s)	72, 141, 151, 945
BsmBI	CGTCTC	2 cut(s)	72, 945
BsmFI	GGGAC	1 cut(s)	232
BsmI	GAATGC	1 cut(s)	602
BsnI	GGCC	2 cut(s)	90, 610
Bso31I	GGTCTC	1 cut(s)	151
Bsp120I	GGGCCC	1 cut(s)	608
Bsp1286I	GDGCHC	1 cut(s)	612
Bsp143I	GATC	3 cut(s)	18, 676, 924
BspACI	CCGC	2 cut(s)	75, 817
BspANI	GGCC	2 cut(s)	90, 610
BspHI	TCATGA	2 cut(s)	757, 802
BspLI	GGNNCC	3 cut(s)	448, 610, 889
BspMI	ACCTGC	1 cut(s)	359
BspPI	GGATC	1 cut(s)	932
BspQI	GCTCTTC	1 cut(s)	441
BspT107I	GGYRCC	1 cut(s)	446
BspTNI	GGTCTC	1 cut(s)	151
BsrDI	GCAATG	1 cut(s)	361
BsrFI	RCCGGY	2 cut(s)	86, 500
BsrI	ACTGG	3 cut(s)	140, 274, 665
BssAI	RCCGGY	2 cut(s)	86, 500
BssMI	GATC	3 cut(s)	18, 676, 924
BssNI	GRCGYC	1 cut(s)	825
Bst2UI	CCWGG	1 cut(s)	421
Bst4CI	ACNGT	4 cut(s)	320, 451, 875, 883
Bst6I	CTCTTC	1 cut(s)	441
BstACI	GRCGYC	1 cut(s)	825
BstC8I	GCNNGC	2 cut(s)	88, 965
BstDEI	CTNAG	1 cut(s)	566
BstF5I	GGATG	3 cut(s)	538, 1086, 1090
BstHHI	GCGC	1 cut(s)	785
BstKTI	GATC	3 cut(s)	21, 679, 927
BstMAI	GTCTC	4 cut(s)	72, 141, 151, 945
BstMBI	GATC	3 cut(s)	18, 676, 924
BstMWI	GCNNNNNNNGC	1 cut(s)	650
BstNI	CCWGG	1 cut(s)	421
BstNSI	RCATGY	1 cut(s)	1050
BstSCI	CCNGG	1 cut(s)	419
BstSLI	GKGCMC	1 cut(s)	612
BstV2I	GAAGAC	2 cut(s)	999, 1029
BsuI	GTATCC	1 cut(s)	1037
BsuRI	GGCC	2 cut(s)	90, 610
BtgZI	GCGATG	1 cut(s)	440
BtrI	CACGTC	1 cut(s)	1099
BtsCI	GGATG	3 cut(s)	538, 1086, 1090
BtsIMutI	CAGTG	3 cut(s)	147, 658, 888
BveI	ACCTGC	1 cut(s)	359
Cac8I	GCNNGC	2 cut(s)	88, 965
CciI	TCATGA	2 cut(s)	757, 802
CfoI	GCGC	1 cut(s)	785
Cfr10I	RCCGGY	2 cut(s)	86, 500
Cfr13I	GGNCC	3 cut(s)	596, 608, 609
Csp6I	GTAC	3 cut(s)	316, 447, 452
CspAI	ACCGGT	1 cut(s)	500
CviAII	CATG	8 cut(s)	579, 758, 803, 901, 1047, 1058, 1077, 1103
CviQI	GTAC	3 cut(s)	316, 447, 452
DdeI	CTNAG	1 cut(s)	566
DpnI	GATC	3 cut(s)	20, 678, 926
DpnII	GATC	3 cut(s)	18, 676, 924
DraI	TTTAAA	1 cut(s)	324
DrdI	GACNNNNNNGTC	1 cut(s)	542
DriI	GACNNNNNGTC	1 cut(s)	401
DseDI	GACNNNNNNGTC	1 cut(s)	542
Eam1104I	CTCTTC	1 cut(s)	441
Eam1105I	GACNNNNNGTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	441
Eco24I	GRGCYC	1 cut(s)	612
Eco31I	GGTCTC	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	596
Eco57I	CTGAAG	1 cut(s)	192
EcoO109I	RGGNCCY	1 cut(s)	609
EcoRII	CCWGG	1 cut(s)	419
EcoT38I	GRGCYC	1 cut(s)	612
Esp3I	CGTCTC	2 cut(s)	72, 945
FaeI	CATG	8 cut(s)	582, 761, 806, 904, 1050, 1061, 1080, 1106
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	8 cut(s)	578, 757, 802, 900, 1046, 1057, 1076, 1102
FbaI	TGATCA	1 cut(s)	18
FblI	GTMKAC	1 cut(s)	111
FokI	GGATG	3 cut(s)	545, 1093, 1097
FriOI	GRGCYC	1 cut(s)	612
GlaI	GCGC	1 cut(s)	784
GsuI	CTGGAG	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	90, 610
HapII	CCGG	2 cut(s)	87, 501
HhaI	GCGC	1 cut(s)	785
Hin1I	GRCGYC	1 cut(s)	825
Hin1II	CATG	8 cut(s)	582, 761, 806, 904, 1050, 1061, 1080, 1106
Hin6I	GCGC	1 cut(s)	783
HinP1I	GCGC	1 cut(s)	783
HincII	GTYRAC	1 cut(s)	1063
HindII	GTYRAC	1 cut(s)	1063
HinfI	GANTC	7 cut(s)	69, 409, 470, 562, 664, 868, 904
HpaII	CCGG	2 cut(s)	87, 501
HphI	GGTGA	3 cut(s)	490, 515, 716
Hpy166II	GTNNAC	3 cut(s)	112, 709, 1063
Hpy188I	TCNGA	4 cut(s)	344, 626, 681, 1096
Hpy188III	TCNNGA	7 cut(s)	406, 530, 758, 803, 829, 859, 946
Hpy8I	GTNNAC	3 cut(s)	112, 709, 1063
HpyAV	CCTTC	6 cut(s)	101, 173, 216, 382, 832, 997
HpyCH4III	ACNGT	4 cut(s)	320, 451, 875, 883
HpyCH4IV	ACGT	3 cut(s)	825, 1034, 1098
HpyCH4V	TGCA	8 cut(s)	284, 354, 485, 602, 632, 658, 750, 1102
HpyF10VI	GCNNNNNNNGC	1 cut(s)	650
HpyF3I	CTNAG	1 cut(s)	566
HpySE526I	ACGT	3 cut(s)	825, 1034, 1098
Hsp92I	GRCGYC	1 cut(s)	825
Hsp92II	CATG	8 cut(s)	582, 761, 806, 904, 1050, 1061, 1080, 1106
HspAI	GCGC	1 cut(s)	783
KpnI	GGTACC	1 cut(s)	450
KroI	GCCGGC	1 cut(s)	86
KroNI	GCCGGC	1 cut(s)	88
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	3 cut(s)	18, 676, 924
LguI	GCTCTTC	1 cut(s)	441
LmnI	GCTCC	3 cut(s)	650, 681, 741
MaeII	ACGT	3 cut(s)	825, 1034, 1098
MaeIII	GTNAC	3 cut(s)	165, 415, 496
MalI	GATC	3 cut(s)	20, 678, 926
MboI	GATC	3 cut(s)	18, 676, 924
MboII	GAAGA	4 cut(s)	428, 968, 1004, 1029
MfeI	CAATTG	2 cut(s)	57, 645
MhlI	GDGCHC	1 cut(s)	612
MluCI	AATT	7 cut(s)	57, 263, 285, 325, 363, 645, 719
MlyI	GAGTC	1 cut(s)	571
MnlI	CCTC	9 cut(s)	305, 386, 450, 578, 678, 773, 799, 1012, 1065
MroNI	GCCGGC	1 cut(s)	86
MroXI	GAANNNNTTC	1 cut(s)	842
MseI	TTAA	6 cut(s)	39, 200, 288, 323, 384, 920
MspA1I	CMGCKG	2 cut(s)	75, 549
MspI	CCGG	2 cut(s)	87, 501
MspR9I	CCNGG	1 cut(s)	421
MunI	CAATTG	2 cut(s)	57, 645
Mva1269I	GAATGC	1 cut(s)	602
MvaI	CCWGG	1 cut(s)	421
MwoI	GCNNNNNNNGC	1 cut(s)	650
NaeI	GCCGGC	1 cut(s)	88
NdeII	GATC	3 cut(s)	18, 676, 924
NgoMIV	GCCGGC	1 cut(s)	86
NlaIII	CATG	8 cut(s)	582, 761, 806, 904, 1050, 1061, 1080, 1106
NlaIV	GGNNCC	3 cut(s)	448, 610, 889
NmuCI	GTSAC	2 cut(s)	415, 496
NspI	RCATGY	1 cut(s)	1050
PagI	TCATGA	2 cut(s)	757, 802
PaqCI	CACCTGC	1 cut(s)	359
PciSI	GCTCTTC	1 cut(s)	441
PctI	GAATGC	1 cut(s)	602
PdiI	GCCGGC	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	842
PfeI	GAWTC	6 cut(s)	69, 409, 470, 664, 868, 904
PinAI	ACCGGT	1 cut(s)	500
PleI	GAGTC	1 cut(s)	570
PpsI	GAGTC	1 cut(s)	570
Psp6I	CCWGG	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	419
PspN4I	GGNNCC	3 cut(s)	448, 610, 889
PspOMI	GGGCCC	1 cut(s)	608
PspPI	GGNCC	3 cut(s)	596, 608, 609
PvuII	CAGCTG	1 cut(s)	549
RsaI	GTAC	3 cut(s)	317, 448, 453
RsaNI	GTAC	3 cut(s)	316, 447, 452
SapI	GCTCTTC	1 cut(s)	441
SaqAI	TTAA	6 cut(s)	39, 200, 288, 323, 384, 920
Sau3AI	GATC	3 cut(s)	18, 676, 924
Sau96I	GGNCC	3 cut(s)	596, 608, 609
SchI	GAGTC	1 cut(s)	571
ScrFI	CCNGG	1 cut(s)	421
SduI	GDGCHC	1 cut(s)	612
SgrAI	CRCCGGYG	1 cut(s)	500
SinI	GGWCC	1 cut(s)	596
SmlI	CTYRAG	1 cut(s)	669
SmoI	CTYRAG	1 cut(s)	669
Sse9I	AATT	7 cut(s)	57, 263, 285, 325, 363, 645, 719
SsiI	CCGC	2 cut(s)	75, 817
StyD4I	CCNGG	1 cut(s)	419
TaaI	ACNGT	4 cut(s)	320, 451, 875, 883
TaiI	ACGT	3 cut(s)	828, 1037, 1101
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	7 cut(s)	57, 263, 285, 325, 363, 645, 719
TfiI	GAWTC	6 cut(s)	69, 409, 470, 664, 868, 904
Tru1I	TTAA	6 cut(s)	39, 200, 288, 323, 384, 920
Tru9I	TTAA	6 cut(s)	39, 200, 288, 323, 384, 920
TscAI	CASTG	3 cut(s)	147, 665, 888
TseFI	GTSAC	2 cut(s)	415, 496
Tsp45I	GTSAC	2 cut(s)	415, 496
TspDTI	ATGAA	6 cut(s)	17, 59, 65, 483, 791, 1101
TspRI	CASTG	3 cut(s)	147, 665, 888
VpaK11BI	GGWCC	1 cut(s)	596
XapI	RAATTY	2 cut(s)	263, 719
XceI	RCATGY	1 cut(s)	1050
XmiI	GTMKAC	1 cut(s)	111
XmnI	GAANNNNTTC	1 cut(s)	842
ZraI	GACGTC	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.