Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004571.1

Orthogroup ID

OG0001689

Physical Location & Seq

Genomic Coordinates Reverse (-)

112996 .. 114261

Gene Structure 1266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004571.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

atgatggcaaaatcaataggtagcaagaactggggcctattgaggctagtggaggaaagatcattgagcaagaaaacagaggaagagaaaaaacatccacaagaaacacagatcccttatctccctgaagattgtatctcaagcatccttgtacgacttcctattgaatctcttcagaggtcaagttttgtgtgcaagccttggtttagcataattaaaagtcccaaattcatcgatgctcatctcaaccgatctgaatctgttttgatttttctatcgccaataagagaggaaatgtcatattctttttccatggcatctgttccagaagagaatccgaacaccgtctcagttgaatcaaaacttctaccgccaaattgtatccccattttcagcaacccgtccctaaactctacaaaattttctgtccagtttcttgcaattaaaaatggtaagactgagataggagggtacagtttaaattgcttgggaagtatcagagccacctgcaatggtctaattttacttgataacaaagttaagaagggaggacttatagtcttgaatcctgtgaccaggaagctgattgctcttcctcttggtaccttacatcgcccatataatgaatcctatggttttgcattgagtgatgtcaccggtgaatataaaatagtccatttgtttcgggatgacgggtttgtcagctgtgagattttgagtcttagaaaaaaggcatggagaggggtcaatggtcctgcattcggggcctttggttggttcggatatgcacctgtttcagcaattggagctttgcactggattcctcaagttgatcggagcgattacattgtttcagtggaagtccacaaggagaaatttcaccaaataatgctccccaaaagttgcagaactcatgacaggattattgaaatgggaggcgcattgggttttgtcattcatgaggagataaaccacattgacgtctggattttgaagggtttctgtggggaagtctggacaaagaatcacagtatcacagtgggttccattatagacatgattccctatttcagtttaaggatcaagggagatattattttcaagagagacgaagatggctcgctatatgcttatgactttcagcaagaagacttgacgaaggttgagatggtagaggaatgtatcccaacgtcttctgctacatgcctacctcatgtcaacagccttgtatcatggatggatgaaagtttggacgtgcatgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

421

Amino Acids

47.38

Weight (kDa)

6.37

Isoelectric Point (pI)

45.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30670 FvH4_5g30670 FvH4_5g30670 FvH4_5g31300
malus_domestica	MD15G1404600.v1.1
prunus_persica	Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1
pyrus_communis	pycom15g36200
rosa_chinensis	RchiOBHm_Chr7g0218801 RchiOBHm_Chr7g0225531 RchiOBHm_Chr7g0226391 RchiOBHm_Chr7g0231221
rosa_laevigata	RLG00000001428 RLG00000001721 RLG00000001808 RLG00000002341
rosa_multiflora	Rmu_sc0003876.1_g000039 Rmu_sc0004426.1_g000001 Rmu_sc0004571.1_g000021 Rmu_sc0012403.1_g000002 Rmu_sc0025113.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229430 Rroxscaffold_3G00233700
rosa_rugosa	Rorug07G0230700 Rorug07G0237000 Rorug07G0265200
rosa_samantha	Rh7AG321300 Rh7AG322200 Rh7AG372900 Rh7AG385100 Rh7AG418400 Rh7BG365200 Rh7BG371000 Rh7BG394100 Rh7CG337800 Rh7CG391100 Rh7CG404500 Rh7CG438200 Rh7DG376000 Rh7DG384200 Rh7DG412400
rosa_wichuraiana	Rw7G031740 Rw7G032190 Rw7G032350 Rw7G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	515
AasI	GACNNNNNNGTC	1 cut(s)	698
AatII	GACGTC	1 cut(s)	984
Acc36I	ACCTGC	1 cut(s)	515
Acc65I	GGTACC	1 cut(s)	602
AccB1I	GGYRCC	1 cut(s)	602
AciI	CCGC	1 cut(s)	371
AclWI	GGATC	2 cut(s)	106, 1088
AcsI	RAATTY	3 cut(s)	227, 419, 875
AcuI	CTGAAG	2 cut(s)	147, 158
AcyI	GRCGYC	1 cut(s)	981
AfaI	GTAC	3 cut(s)	153, 473, 604
AfiI	CCNNNNNNNGG	2 cut(s)	761, 774
AgeI	ACCGGT	1 cut(s)	656
AgsI	TTSAA	6 cut(s)	167, 356, 565, 929, 994, 1102
AhdI	GACNNNNNGTC	1 cut(s)	557
AjiI	CACGTC	1 cut(s)	1255
AjnI	CCWGG	1 cut(s)	575
AluBI	AGCT	3 cut(s)	583, 705, 809
AluI	AGCT	3 cut(s)	583, 705, 809
Alw26I	GTCTC	2 cut(s)	352, 1101
AlwI	GGATC	2 cut(s)	106, 1088
AoxI	GGCC	2 cut(s)	34, 765
ApoI	RAATTY	3 cut(s)	227, 419, 875
AsiGI	ACCGGT	1 cut(s)	656
Asp700I	GAANNNNTTC	2 cut(s)	171, 998
Asp718I	GGTACC	1 cut(s)	602
AspLEI	GCGC	1 cut(s)	941
AspS9I	GGNCC	3 cut(s)	34, 752, 765
AsuHPI	GGTGA	3 cut(s)	646, 671, 872
AvaII	GGWCC	1 cut(s)	752
BanI	GGYRCC	1 cut(s)	602
BbsI	GAAGAC	2 cut(s)	1155, 1185
BccI	CCATC	3 cut(s)	1109, 1162, 1231
BciT130I	CCWGG	1 cut(s)	577
BciVI	GTATCC	2 cut(s)	392, 1193
BcoDI	GTCTC	2 cut(s)	352, 1101
BfaI	CTAG	1 cut(s)	47
BfuAI	ACCTGC	1 cut(s)	515
BfuI	GTATCC	2 cut(s)	392, 1193
Bme1390I	CCNGG	1 cut(s)	577
Bme18I	GGWCC	1 cut(s)	752
BmeRI	GACNNNNNGTC	1 cut(s)	557
BmgBI	CACGTC	1 cut(s)	1255
BmgT120I	GGNCC	3 cut(s)	34, 752, 765
BmiI	GGNNCC	4 cut(s)	35, 604, 766, 1045
BmrFI	CCNGG	1 cut(s)	577
BmrI	ACTGGG	1 cut(s)	40
BmsI	GCATC	3 cut(s)	153, 226, 326
BmuI	ACTGGG	1 cut(s)	40
BpiI	GAAGAC	2 cut(s)	1155, 1185
BpuEI	CTTGAG	2 cut(s)	124, 810
Bsa29I	ATCGAT	1 cut(s)	234
BsaBI	GATNNNNATC	2 cut(s)	240, 256
BsaHI	GRCGYC	1 cut(s)	981
BsaJI	CCNNGG	2 cut(s)	200, 312
BsaWI	WCCGGW	1 cut(s)	656
Bsc4I	CCNNNNNNNGG	2 cut(s)	761, 774
Bse118I	RCCGGY	1 cut(s)	656
Bse1I	ACTGG	3 cut(s)	35, 430, 821
Bse3DI	GCAATG	1 cut(s)	517
Bse8I	GATNNNNATC	2 cut(s)	240, 256
BseBI	CCWGG	1 cut(s)	577
BseCI	ATCGAT	1 cut(s)	234
BseDI	CCNNGG	2 cut(s)	200, 312
BseGI	GGATG	5 cut(s)	94, 144, 694, 1242, 1246
BseJI	GATNNNNATC	2 cut(s)	240, 256
BseLI	CCNNNNNNNGG	2 cut(s)	761, 774
BseMI	GCAATG	1 cut(s)	517
BseMII	CTCAG	2 cut(s)	363, 450
BseNI	ACTGG	3 cut(s)	35, 430, 821
BseRI	GAGGAG	1 cut(s)	977
BshFI	GGCC	2 cut(s)	36, 767
BshNI	GGYRCC	1 cut(s)	602
BshTI	ACCGGT	1 cut(s)	656
BshVI	ATCGAT	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	657
BslFI	GGGAC	2 cut(s)	207, 388
BslI	CCNNNNNNNGG	2 cut(s)	761, 774
BsmAI	GTCTC	2 cut(s)	352, 1101
BsmBI	CGTCTC	2 cut(s)	352, 1101
BsmFI	GGGAC	2 cut(s)	207, 388
BsmI	GAATGC	1 cut(s)	758
BsnI	GGCC	2 cut(s)	36, 767
Bsp143I	GATC	5 cut(s)	59, 111, 251, 832, 1080
Bsp19I	CCATGG	1 cut(s)	312
BspACI	CCGC	1 cut(s)	371
BspANI	GGCC	2 cut(s)	36, 767
BspCNI	CTCAG	2 cut(s)	362, 451
BspDI	ATCGAT	1 cut(s)	234
BspHI	TCATGA	2 cut(s)	913, 958
BspLI	GGNNCC	4 cut(s)	35, 604, 766, 1045
BspMI	ACCTGC	1 cut(s)	515
BspPI	GGATC	2 cut(s)	106, 1088
BspQI	GCTCTTC	1 cut(s)	597
BspT107I	GGYRCC	1 cut(s)	602
BsrDI	GCAATG	1 cut(s)	517
BsrFI	RCCGGY	1 cut(s)	656
BsrI	ACTGG	3 cut(s)	35, 430, 821
BssAI	RCCGGY	1 cut(s)	656
BssECI	CCNNGG	2 cut(s)	200, 312
BssMI	GATC	5 cut(s)	59, 111, 251, 832, 1080
BssNI	GRCGYC	1 cut(s)	981
BssT1I	CCWWGG	2 cut(s)	200, 312
Bst2UI	CCWGG	1 cut(s)	577
Bst4CI	ACNGT	4 cut(s)	346, 476, 1031, 1039
Bst6I	CTCTTC	4 cut(s)	78, 177, 324, 597
BstACI	GRCGYC	1 cut(s)	981
BstC8I	GCNNGC	2 cut(s)	197, 1121
BstDEI	CTNAG	3 cut(s)	349, 459, 722
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	5 cut(s)	94, 144, 694, 1242, 1246
BstHHI	GCGC	1 cut(s)	941
BstKTI	GATC	5 cut(s)	62, 114, 254, 835, 1083
BstMAI	GTCTC	2 cut(s)	352, 1101
BstMBI	GATC	5 cut(s)	59, 111, 251, 832, 1080
BstMWI	GCNNNNNNNGC	2 cut(s)	764, 806
BstNI	CCWGG	1 cut(s)	577
BstNSI	RCATGY	1 cut(s)	1206
BstSCI	CCNGG	1 cut(s)	575
BstV2I	GAAGAC	2 cut(s)	1155, 1185
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
Bsu15I	ATCGAT	1 cut(s)	234
BsuI	GTATCC	2 cut(s)	392, 1193
BsuRI	GGCC	2 cut(s)	36, 767
BsuTUI	ATCGAT	1 cut(s)	234
BtgI	CCRYGG	1 cut(s)	312
BtgZI	GCGATG	1 cut(s)	596
BtrI	CACGTC	1 cut(s)	1255
BtsCI	GGATG	5 cut(s)	94, 144, 694, 1242, 1246
BtsIMutI	CAGTG	3 cut(s)	814, 861, 1044
BveI	ACCTGC	1 cut(s)	515
Cac8I	GCNNGC	2 cut(s)	197, 1121
CciI	TCATGA	2 cut(s)	913, 958
CfoI	GCGC	1 cut(s)	941
Cfr10I	RCCGGY	1 cut(s)	656
Cfr13I	GGNCC	3 cut(s)	34, 752, 765
ClaI	ATCGAT	1 cut(s)	234
Csp6I	GTAC	3 cut(s)	152, 472, 603
CspAI	ACCGGT	1 cut(s)	656
CviAII	CATG	9 cut(s)	313, 735, 914, 959, 1057, 1203, 1214, 1233, 1259
CviQI	GTAC	3 cut(s)	152, 472, 603
DdeI	CTNAG	3 cut(s)	349, 459, 722
DpnI	GATC	5 cut(s)	61, 113, 253, 834, 1082
DpnII	GATC	5 cut(s)	59, 111, 251, 832, 1080
DraI	TTTAAA	1 cut(s)	480
DrdI	GACNNNNNNGTC	1 cut(s)	698
DriI	GACNNNNNGTC	1 cut(s)	557
DseDI	GACNNNNNNGTC	1 cut(s)	698
Eam1104I	CTCTTC	4 cut(s)	78, 177, 324, 597
Eam1105I	GACNNNNNGTC	1 cut(s)	557
EarI	CTCTTC	4 cut(s)	78, 177, 324, 597
Eco130I	CCWWGG	2 cut(s)	200, 312
Eco47I	GGWCC	1 cut(s)	752
Eco57I	CTGAAG	2 cut(s)	147, 158
EcoO109I	RGGNCCY	2 cut(s)	34, 765
EcoRII	CCWGG	1 cut(s)	575
EcoT14I	CCWWGG	2 cut(s)	200, 312
ErhI	CCWWGG	2 cut(s)	200, 312
Esp3I	CGTCTC	2 cut(s)	352, 1101
FaeI	CATG	9 cut(s)	316, 738, 917, 962, 1060, 1206, 1217, 1236, 1262
FaqI	GGGAC	2 cut(s)	207, 388
FatI	CATG	9 cut(s)	312, 734, 913, 958, 1056, 1202, 1213, 1232, 1258
FokI	GGATG	5 cut(s)	81, 131, 701, 1249, 1253
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	940
HaeIII	GGCC	2 cut(s)	36, 767
HapII	CCGG	1 cut(s)	657
HhaI	GCGC	1 cut(s)	941
Hin1I	GRCGYC	1 cut(s)	981
Hin1II	CATG	9 cut(s)	316, 738, 917, 962, 1060, 1206, 1217, 1236, 1262
Hin6I	GCGC	1 cut(s)	939
HinP1I	GCGC	1 cut(s)	939
HincII	GTYRAC	1 cut(s)	1219
HindII	GTYRAC	1 cut(s)	1219
HpaII	CCGG	1 cut(s)	657
HphI	GGTGA	3 cut(s)	646, 671, 872
Hpy166II	GTNNAC	2 cut(s)	865, 1219
Hpy188I	TCNGA	6 cut(s)	177, 256, 339, 500, 782, 837
Hpy188III	TCNNGA	8 cut(s)	326, 562, 686, 914, 959, 985, 1015, 1102
Hpy8I	GTNNAC	2 cut(s)	865, 1219
HpyAV	CCTTC	3 cut(s)	538, 988, 1153
HpyCH4III	ACNGT	4 cut(s)	346, 476, 1031, 1039
HpyCH4IV	ACGT	3 cut(s)	981, 1190, 1254
HpyCH4V	TGCA	9 cut(s)	195, 440, 510, 641, 758, 788, 814, 906, 1258
HpyF10VI	GCNNNNNNNGC	2 cut(s)	764, 806
HpyF3I	CTNAG	3 cut(s)	349, 459, 722
HpySE526I	ACGT	3 cut(s)	981, 1190, 1254
Hsp92I	GRCGYC	1 cut(s)	981
Hsp92II	CATG	9 cut(s)	316, 738, 917, 962, 1060, 1206, 1217, 1236, 1262
HspAI	GCGC	1 cut(s)	939
KpnI	GGTACC	1 cut(s)	606
Kzo9I	GATC	5 cut(s)	59, 111, 251, 832, 1080
LguI	GCTCTTC	1 cut(s)	597
LmnI	GCTCC	3 cut(s)	806, 837, 897
LweI	GCATC	3 cut(s)	153, 226, 326
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	3 cut(s)	981, 1190, 1254
MaeIII	GTNAC	2 cut(s)	571, 652
MalI	GATC	5 cut(s)	61, 113, 253, 834, 1082
MboI	GATC	5 cut(s)	59, 111, 251, 832, 1080
MboII	GAAGA	8 cut(s)	95, 140, 164, 341, 584, 1124, 1160, 1185
MfeI	CAATTG	1 cut(s)	801
MflI	RGATCY	1 cut(s)	111
MluCI	AATT	9 cut(s)	213, 227, 376, 419, 441, 481, 519, 801, 875
MlyI	GAGTC	1 cut(s)	727
MroXI	GAANNNNTTC	2 cut(s)	171, 998
MseI	TTAA	5 cut(s)	216, 444, 479, 540, 1076
MspA1I	CMGCKG	1 cut(s)	705
MspI	CCGG	1 cut(s)	657
MspR9I	CCNGG	1 cut(s)	577
MunI	CAATTG	1 cut(s)	801
Mva1269I	GAATGC	1 cut(s)	758
MvaI	CCWGG	1 cut(s)	577
MwoI	GCNNNNNNNGC	2 cut(s)	764, 806
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	5 cut(s)	59, 111, 251, 832, 1080
NlaIII	CATG	9 cut(s)	316, 738, 917, 962, 1060, 1206, 1217, 1236, 1262
NlaIV	GGNNCC	4 cut(s)	35, 604, 766, 1045
NmuCI	GTSAC	2 cut(s)	571, 652
NspI	RCATGY	1 cut(s)	1206
PagI	TCATGA	2 cut(s)	913, 958
PaqCI	CACCTGC	1 cut(s)	515
PciSI	GCTCTTC	1 cut(s)	597
PctI	GAATGC	1 cut(s)	758
PdmI	GAANNNNTTC	2 cut(s)	171, 998
PfeI	GAWTC	9 cut(s)	167, 257, 334, 356, 565, 626, 820, 1024, 1060
PinAI	ACCGGT	1 cut(s)	656
PleI	GAGTC	1 cut(s)	726
PpsI	GAGTC	1 cut(s)	726
Psp6I	CCWGG	1 cut(s)	575
PspGI	CCWGG	1 cut(s)	575
PspN4I	GGNNCC	4 cut(s)	35, 604, 766, 1045
PspPI	GGNCC	3 cut(s)	34, 752, 765
PsuI	RGATCY	1 cut(s)	111
PvuII	CAGCTG	1 cut(s)	705
RsaI	GTAC	3 cut(s)	153, 473, 604
RsaNI	GTAC	3 cut(s)	152, 472, 603
SapI	GCTCTTC	1 cut(s)	597
SaqAI	TTAA	5 cut(s)	216, 444, 479, 540, 1076
Sau3AI	GATC	5 cut(s)	59, 111, 251, 832, 1080
Sau96I	GGNCC	3 cut(s)	34, 752, 765
SchI	GAGTC	1 cut(s)	727
ScrFI	CCNGG	1 cut(s)	577
SfaNI	GCATC	3 cut(s)	153, 226, 326
SgrAI	CRCCGGYG	1 cut(s)	656
SinI	GGWCC	1 cut(s)	752
SmlI	CTYRAG	2 cut(s)	139, 825
SmoI	CTYRAG	2 cut(s)	139, 825
Sse9I	AATT	9 cut(s)	213, 227, 376, 419, 441, 481, 519, 801, 875
SsiI	CCGC	1 cut(s)	371
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	575
StyI	CCWWGG	2 cut(s)	200, 312
TaaI	ACNGT	4 cut(s)	346, 476, 1031, 1039
TaiI	ACGT	3 cut(s)	984, 1193, 1257
TaqI	TCGA	1 cut(s)	234
TasI	AATT	9 cut(s)	213, 227, 376, 419, 441, 481, 519, 801, 875
TfiI	GAWTC	9 cut(s)	167, 257, 334, 356, 565, 626, 820, 1024, 1060
Tru1I	TTAA	5 cut(s)	216, 444, 479, 540, 1076
Tru9I	TTAA	5 cut(s)	216, 444, 479, 540, 1076
TscAI	CASTG	3 cut(s)	821, 861, 1044
TseFI	GTSAC	2 cut(s)	571, 652
Tsp45I	GTSAC	2 cut(s)	571, 652
TspDTI	ATGAA	4 cut(s)	220, 639, 947, 1257
TspRI	CASTG	3 cut(s)	821, 861, 1044
VpaK11BI	GGWCC	1 cut(s)	752
XapI	RAATTY	3 cut(s)	227, 419, 875
XceI	RCATGY	1 cut(s)	1206
XmnI	GAANNNNTTC	2 cut(s)	171, 998
XspI	CTAG	1 cut(s)	47
ZraI	GACGTC	1 cut(s)	982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.