Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001689

Physical Location & Seq

Genomic Coordinates Forward (+)

36327477 .. 36331055

Gene Structure 3579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG321300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGATGGTGACAAGAAGCAAGAGTTCAGGCCTATTAAAGTTAGTGGAGGAGAGGTTATTGAAGAGGAAAACAGAGGAAGAGAAAAGGCAAGCACAAATTGCATATATCCCGAAGGACTGTATCTCAAACATCCTTGCACGACTTCCTGCTGACTCTCTTCAAAGGTCAAGGTTTGTTTGCAAACCATGGTATAATGTAGTTAAAAACCCCAAATTCATTCGTGCTCATCTCCAACGTTCTGAATCTGTTTTGATTTTTTTAACACCAAATGTAAAGGAAAGTTTGCACCCTATTTCTAAGAAGCTAAAAGTGGGAGAAAATGGAAGGTCATATCCTATGGCATCTAACCTACAGGAGAAGCAAAACAAAATTCCAGTTGAATCAAAACTTTTTGACCCAAACAGTATCCCCATTTTTGGTCACCCAGCCTTAAATTCTCCAAAAAATTTTGTTCAGTTTCTGGAATTTAAAAATGGTAAGAGTGACATAGGAGAATACGGTTTAAGTTGCTTGGGCAATAATATTAGAGCCACCTGGAATGGTCTAATATTGCTTGACAACAAATTGAAGAAGGGAGGAGTCATAGTCTTGAATCCTGTGACTAGGAAAGTGATTGCACTTCCTGTGGGTACCTTGTGTCGTCTTCCACATCAAGAATCATATGGTTTCGCACTGAGTGATGTAATTGGTGAGTATAAAGTAGTCCACTTGTTTCTGGATCAGTTGGGGTTGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

245

Amino Acids

27.65

Weight (kDa)

9.79

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	36 - 73	1.5e-08	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30670 FvH4_5g30670 FvH4_5g30670 FvH4_5g31300
malus_domestica	MD15G1404600.v1.1
prunus_persica	Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1
pyrus_communis	pycom15g36200
rosa_chinensis	RchiOBHm_Chr7g0218801 RchiOBHm_Chr7g0225531 RchiOBHm_Chr7g0226391 RchiOBHm_Chr7g0231221
rosa_laevigata	RLG00000001428 RLG00000001721 RLG00000001808 RLG00000002341
rosa_multiflora	Rmu_sc0003876.1_g000039 Rmu_sc0004426.1_g000001 Rmu_sc0004571.1_g000021 Rmu_sc0012403.1_g000002 Rmu_sc0025113.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229430 Rroxscaffold_3G00233700
rosa_rugosa	Rorug07G0230700 Rorug07G0237000 Rorug07G0265200
rosa_samantha	Rh7AG321300 Rh7AG322200 Rh7AG372900 Rh7AG385100 Rh7AG418400 Rh7BG365200 Rh7BG371000 Rh7BG394100 Rh7CG337800 Rh7CG391100 Rh7CG404500 Rh7CG438200 Rh7DG376000 Rh7DG384200 Rh7DG412400
rosa_wichuraiana	Rw7G031740 Rw7G032190 Rw7G032350 Rw7G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	629
AccB1I	GGYRCC	1 cut(s)	629
AclI	AACGTT	1 cut(s)	235
AclWI	GGATC	1 cut(s)	726
AcsI	RAATTY	5 cut(s)	212, 369, 433, 445, 464
AdeI	CACNNNGTG	1 cut(s)	677
AfaI	GTAC	1 cut(s)	631
AfiI	CCNNNNNNNGG	1 cut(s)	416
AgsI	TTSAA	5 cut(s)	61, 161, 380, 568, 592
AjnI	CCWGG	1 cut(s)	533
AluBI	AGCT	1 cut(s)	304
AluI	AGCT	1 cut(s)	304
Alw21I	GWGCWC	1 cut(s)	226
AlwI	GGATC	1 cut(s)	726
AlwNI	CAGNNNCTG	1 cut(s)	460
AoxI	GGCC	1 cut(s)	28
ApoI	RAATTY	5 cut(s)	212, 369, 433, 445, 464
Asp718I	GGTACC	1 cut(s)	629
AsuHPI	GGTGA	3 cut(s)	19, 413, 701
BanI	GGYRCC	1 cut(s)	629
BbsI	GAAGAC	1 cut(s)	635
Bbv12I	GWGCWC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	535
BciVI	GTATCC	1 cut(s)	416
BfaI	CTAG	1 cut(s)	603
BfmI	CTRYAG	1 cut(s)	350
BfuI	GTATCC	1 cut(s)	416
Bme1390I	CCNGG	1 cut(s)	535
BmiI	GGNNCC	1 cut(s)	631
BmrFI	CCNGG	1 cut(s)	535
BmsI	GCATC	1 cut(s)	350
BpiI	GAAGAC	1 cut(s)	635
BsaJI	CCNNGG	1 cut(s)	185
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 68, 570, 600
Bsc4I	CCNNNNNNNGG	1 cut(s)	416
Bse1I	ACTGG	1 cut(s)	374
BseBI	CCWGG	1 cut(s)	535
BseDI	CCNNGG	1 cut(s)	185
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	416
BseMII	CTCAG	1 cut(s)	665
BseNI	ACTGG	1 cut(s)	374
BseRI	GAGGAG	2 cut(s)	62, 591
BseYI	CCCAGC	1 cut(s)	424
BshFI	GGCC	1 cut(s)	30
BshNI	GGYRCC	1 cut(s)	629
BsiHKAI	GWGCWC	1 cut(s)	226
BslI	CCNNNNNNNGG	1 cut(s)	416
BsnI	GGCC	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	718
Bsp19I	CCATGG	1 cut(s)	185
BspANI	GGCC	1 cut(s)	30
BspCNI	CTCAG	1 cut(s)	666
BspLI	GGNNCC	1 cut(s)	631
BspPI	GGATC	1 cut(s)	726
BspT107I	GGYRCC	1 cut(s)	629
BsrI	ACTGG	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	1 cut(s)	718
BssT1I	CCWWGG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	535
Bst4CI	ACNGT	3 cut(s)	119, 404, 500
Bst6I	CTCTTC	3 cut(s)	56, 72, 162
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	2 cut(s)	297, 674
BstDSI	CCRYGG	1 cut(s)	185
BstEII	GGTNACC	1 cut(s)	419
BstF5I	GGATG	1 cut(s)	129
BstKTI	GATC	1 cut(s)	721
BstMBI	GATC	1 cut(s)	718
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	1 cut(s)	535
BstPI	GGTNACC	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	533
BstSFI	CTRYAG	1 cut(s)	350
BstV2I	GAAGAC	1 cut(s)	635
BsuI	GTATCC	1 cut(s)	416
BsuRI	GGCC	1 cut(s)	30
BtgI	CCRYGG	1 cut(s)	185
BtsCI	GGATG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	671
Cac8I	GCNNGC	1 cut(s)	90
CaiI	CAGNNNCTG	1 cut(s)	460
Csp6I	GTAC	1 cut(s)	630
CviAII	CATG	1 cut(s)	186
CviJI	RGCY	4 cut(s)	30, 304, 428, 530
CviKI_1	RGCY	4 cut(s)	30, 304, 428, 530
CviQI	GTAC	1 cut(s)	630
DdeI	CTNAG	2 cut(s)	297, 674
DpnI	GATC	1 cut(s)	720
DpnII	GATC	1 cut(s)	718
DraI	TTTAAA	1 cut(s)	469
DraIII	CACNNNGTG	1 cut(s)	677
Eam1104I	CTCTTC	3 cut(s)	56, 72, 162
EarI	CTCTTC	3 cut(s)	56, 72, 162
Eco130I	CCWWGG	1 cut(s)	185
Eco147I	AGGCCT	1 cut(s)	30
Eco91I	GGTNACC	1 cut(s)	419
EcoO65I	GGTNACC	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	533
EcoT14I	CCWWGG	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	185
FaeI	CATG	1 cut(s)	189
FatI	CATG	1 cut(s)	185
FauNDI	CATATG	1 cut(s)	661
FokI	GGATG	1 cut(s)	116
FspBI	CTAG	1 cut(s)	603
GsaI	CCCAGC	1 cut(s)	428
HaeIII	GGCC	1 cut(s)	30
Hin1II	CATG	1 cut(s)	189
HinfI	GANTC	6 cut(s)	152, 242, 380, 579, 592, 656
HphI	GGTGA	3 cut(s)	19, 413, 701
Hpy166II	GTNNAC	1 cut(s)	706
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	5 cut(s)	109, 461, 589, 653, 716
Hpy8I	GTNNAC	1 cut(s)	706
HpyAV	CCTTC	3 cut(s)	106, 318, 565
HpyCH4III	ACNGT	3 cut(s)	119, 404, 500
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	5 cut(s)	101, 137, 180, 286, 617
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	2 cut(s)	297, 674
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	1 cut(s)	189
KpnI	GGTACC	1 cut(s)	633
Kzo9I	GATC	1 cut(s)	718
LweI	GCATC	1 cut(s)	350
MaeI	CTAG	1 cut(s)	603
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	4 cut(s)	7, 419, 482, 598
MalI	GATC	1 cut(s)	720
MboI	GATC	1 cut(s)	718
MboII	GAAGA	5 cut(s)	73, 89, 149, 580, 635
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	8 cut(s)	96, 212, 369, 433, 445, 464, 563, 684
MlyI	GAGTC	2 cut(s)	146, 588
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	5 cut(s)	40, 45, 57, 67, 569
MseI	TTAA	6 cut(s)	35, 201, 260, 431, 468, 503
MspR9I	CCNGG	1 cut(s)	535
MvaI	CCWGG	1 cut(s)	535
MwoI	GCNNNNNNNGC	1 cut(s)	98
NcoI	CCATGG	1 cut(s)	185
NdeI	CATATG	1 cut(s)	661
NdeII	GATC	1 cut(s)	718
NlaIII	CATG	1 cut(s)	189
NlaIV	GGNNCC	1 cut(s)	631
NmuCI	GTSAC	4 cut(s)	7, 419, 482, 598
PceI	AGGCCT	1 cut(s)	30
PfeI	GAWTC	4 cut(s)	242, 380, 592, 656
PleI	GAGTC	2 cut(s)	146, 587
PpsI	GAGTC	2 cut(s)	146, 587
Psp1406I	AACGTT	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	533
PspEI	GGTNACC	1 cut(s)	419
PspFI	CCCAGC	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	533
PspN4I	GGNNCC	1 cut(s)	631
PstNI	CAGNNNCTG	1 cut(s)	460
RsaI	GTAC	1 cut(s)	631
RsaNI	GTAC	1 cut(s)	630
SaqAI	TTAA	6 cut(s)	35, 201, 260, 431, 468, 503
Sau3AI	GATC	1 cut(s)	718
SchI	GAGTC	2 cut(s)	146, 588
ScrFI	CCNGG	1 cut(s)	535
SduI	GDGCHC	1 cut(s)	226
SetI	ASST	9 cut(s)	56, 167, 173, 238, 306, 329, 351, 536, 635
SfaNI	GCATC	1 cut(s)	350
SfcI	CTRYAG	1 cut(s)	350
Sse9I	AATT	8 cut(s)	96, 212, 369, 433, 445, 464, 563, 684
SseBI	AGGCCT	1 cut(s)	30
SspI	AATATT	2 cut(s)	523, 549
SspMI	CTAG	1 cut(s)	603
StuI	AGGCCT	1 cut(s)	30
StyD4I	CCNGG	1 cut(s)	533
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	3 cut(s)	119, 404, 500
TaiI	ACGT	1 cut(s)	238
TasI	AATT	8 cut(s)	96, 212, 369, 433, 445, 464, 563, 684
TfiI	GAWTC	4 cut(s)	242, 380, 592, 656
Tru1I	TTAA	6 cut(s)	35, 201, 260, 431, 468, 503
Tru9I	TTAA	6 cut(s)	35, 201, 260, 431, 468, 503
TscAI	CASTG	1 cut(s)	678
TseFI	GTSAC	4 cut(s)	7, 419, 482, 598
Tsp45I	GTSAC	4 cut(s)	7, 419, 482, 598
TspDTI	ATGAA	1 cut(s)	205
TspRI	CASTG	1 cut(s)	678
XapI	RAATTY	5 cut(s)	212, 369, 433, 445, 464
XspI	CTAG	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.