Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001689

Physical Location & Seq

Genomic Coordinates Forward (+)

36259866 .. 36261125

Gene Structure 1260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g36200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGAGAAATTAATTGGAAACAAGAATGCAGGCTTATTAAGGTCAGTGGAGGAGAGATCGTTGACCAAGAAATTAGAGGAAGGGAAAAAACAGTGGCCAGAAGCACAAGCCCCTTACCTCCATAAAGATTGTATATCAAATATCCTTGTGCGACTTCCTCTCGACTCTCTTCAAAGGTCAAGGTTTGTCTGCAAGCCTTGGTATAACATAATTAAAAACCCCAAATTCATTGATGCTCATCTCCATCGTTCTGAATCTGTTTTGATCTTTCTATCACCAATTCCAAAGGACAGTTTGTACCCTTATTCTAAGGCTTCTATACCACGAGAAAAGCCAAACACTGTCTCGGTTGAACTAAAACTTCTTCATCCAAACCCTATCCCCATTTTTGGCCACCCTCTCATAAACTCTCCAATGTATTCTGTCCAGTTTTTGGACTTCAAAAATGATAAGAGTGAGATAGGAGAGTACAATTTAAAATGCTCGGGCAAGATCAGAGCCACCTGCAATGGGCTAATTTTGCTTGATAACATGGTGAAGAAAGGAGGACTGGCAGTCATGAATCCTGTGACTAGGAAGCTGATTGCACTTCCTCTGGGTACTTTATCTCATCCACATCGTGAATCCTATGGTTTTATACTGAATGATGTTACGGGTGAATACAAAGTAGTCCACTTGTTTCGGGATGAGTTGGGGTTTGACAGCTGTGAGATTTTGAGTCTTTGGACACAAGCATGGAGAGAGGTAAATGGCCCTCCATTCAGGCTCCTTCGTTGGTTTGGATATGCACCTGTTTCAGCCATTGGAGGTCTTCACTGGATTCCTCAAGTTGACCGCAGCGATTACATAGTATCTATGGAAGTTGAGAAGGAGAAGTTTCACCAAATACCGCTCCCAAAACCCAGCCGAACTCATGACAGGATCCTTGAAATGGGTGGCCTTTTGAGTTTTGTCATTCATGAGGACGTGAACCATATCGACATTTGGATCTTGAAAGGTTTGTGTGGGGAAGTCTGGACAAAGAATCACAGTATCACAGTGGGTTCCGTCATAGACATGGTTCCTCTTTTCAGTTTAAGAATCAAGGGAGACATTATTTTCAAGAGAGACGAAGATGGCTCGTTGTATGCTTATAGTTTTCGAGACCAAGAGATGAGGAAGGTCGACATGGTAAATGGATGTATCCAGCGGTCTTACATGCCTCATGTCAACACCCTCGTTTCATGGATGGAAGCAAGTCAGGACATGTCTGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

420

Amino Acids

48.0

Weight (kDa)

8.33

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	42 - 76	1.5e-06	F-box domain
FBA_3	PF08268	160 - 368	2.9e-18	F-box associated beta propeller domain
FBA_1	PF07734	166 - 388	3.5e-11	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30670 FvH4_5g30670 FvH4_5g30670 FvH4_5g31300
malus_domestica	MD15G1404600.v1.1
prunus_persica	Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1
pyrus_communis	pycom15g36200
rosa_chinensis	RchiOBHm_Chr7g0218801 RchiOBHm_Chr7g0225531 RchiOBHm_Chr7g0226391 RchiOBHm_Chr7g0231221
rosa_laevigata	RLG00000001428 RLG00000001721 RLG00000001808 RLG00000002341
rosa_multiflora	Rmu_sc0003876.1_g000039 Rmu_sc0004426.1_g000001 Rmu_sc0004571.1_g000021 Rmu_sc0012403.1_g000002 Rmu_sc0025113.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229430 Rroxscaffold_3G00233700
rosa_rugosa	Rorug07G0230700 Rorug07G0237000 Rorug07G0265200
rosa_samantha	Rh7AG321300 Rh7AG322200 Rh7AG372900 Rh7AG385100 Rh7AG418400 Rh7BG365200 Rh7BG371000 Rh7BG394100 Rh7CG337800 Rh7CG391100 Rh7CG404500 Rh7CG438200 Rh7DG376000 Rh7DG384200 Rh7DG412400
rosa_wichuraiana	Rw7G031740 Rw7G032190 Rw7G032350 Rw7G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	512
Acc36I	ACCTGC	1 cut(s)	512
AccB7I	CCANNNNNTGG	1 cut(s)	433
AccBSI	CCGCTC	1 cut(s)	892
AccI	GTMKAC	1 cut(s)	1164
AciI	CCGC	3 cut(s)	835, 890, 1189
AclWI	GGATC	3 cut(s)	916, 929, 995
AcoI	YGGCCR	2 cut(s)	95, 391
AcsI	RAATTY	1 cut(s)	224
AdeI	CACNNNGTG	1 cut(s)	620
AfaI	GTAC	3 cut(s)	299, 470, 601
AfiI	CCNNNNNNNGG	4 cut(s)	389, 433, 510, 931
AflIII	ACRYGT	1 cut(s)	1245
AgsI	TTSAA	6 cut(s)	173, 353, 442, 929, 994, 1102
AhdI	GACNNNNNGTC	1 cut(s)	554
AjiI	CACGTC	1 cut(s)	967
AluBI	AGCT	2 cut(s)	580, 705
AluI	AGCT	2 cut(s)	580, 705
Alw26I	GTCTC	4 cut(s)	349, 1083, 1101, 1137
AlwI	GGATC	3 cut(s)	916, 929, 995
Ama87I	CYCGRG	1 cut(s)	484
AoxI	GGCC	4 cut(s)	95, 391, 751, 937
ApeKI	GCWGC	1 cut(s)	837
ApoI	RAATTY	1 cut(s)	224
AseI	ATTAAT	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	752
AsuHPI	GGTGA	4 cut(s)	267, 547, 668, 872
AvaI	CYCGRG	1 cut(s)	484
BalI	TGGCCA	2 cut(s)	97, 393
BamHI	GGATCC	1 cut(s)	921
BauI	CACGAG	1 cut(s)	324
BbsI	GAAGAC	1 cut(s)	803
BbvI	GCAGC	1 cut(s)	849
BccI	CCATC	3 cut(s)	252, 1109, 1222
BciVI	GTATCC	1 cut(s)	1193
BcoDI	GTCTC	4 cut(s)	349, 1083, 1101, 1137
BfaI	CTAG	1 cut(s)	573
BfuAI	ACCTGC	1 cut(s)	512
BfuI	GTATCC	1 cut(s)	1193
BisI	GCNGC	1 cut(s)	838
BlsI	GCNGC	1 cut(s)	839
BmeRI	GACNNNNNGTC	1 cut(s)	554
BmeT110I	CYCGRG	1 cut(s)	484
BmgBI	CACGTC	1 cut(s)	967
BmgT120I	GGNCC	1 cut(s)	752
BmiI	GGNNCC	4 cut(s)	767, 923, 1045, 1062
BmsI	GCATC	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	803
BpuEI	CTTGAG	1 cut(s)	810
BsaBI	GATNNNNATC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	1137
BsaJI	CCNNGG	1 cut(s)	197
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	4 cut(s)	389, 433, 510, 931
Bse1I	ACTGG	3 cut(s)	427, 555, 821
Bse3DI	GCAATG	1 cut(s)	514
Bse8I	GATNNNNATC	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	197
BseGI	GGATG	5 cut(s)	367, 610, 691, 1184, 1233
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	4 cut(s)	389, 433, 510, 931
BseMI	GCAATG	1 cut(s)	514
BseNI	ACTGG	3 cut(s)	427, 555, 821
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	849
BseYI	CCCAGC	1 cut(s)	902
BshFI	GGCC	4 cut(s)	97, 393, 753, 939
BsiHKCI	CYCGRG	1 cut(s)	484
BslI	CCNNNNNNNGG	4 cut(s)	389, 433, 510, 931
BsmAI	GTCTC	4 cut(s)	349, 1083, 1101, 1137
BsmBI	CGTCTC	1 cut(s)	1101
BsmI	GAATGC	1 cut(s)	31
BsnI	GGCC	4 cut(s)	97, 393, 753, 939
Bso31I	GGTCTC	1 cut(s)	1137
BsoBI	CYCGRG	1 cut(s)	484
Bsp143I	GATC	5 cut(s)	56, 264, 492, 921, 987
BspACI	CCGC	3 cut(s)	835, 890, 1189
BspANI	GGCC	4 cut(s)	97, 393, 753, 939
BspHI	TCATGA	3 cut(s)	558, 913, 958
BspLI	GGNNCC	4 cut(s)	767, 923, 1045, 1062
BspMI	ACCTGC	1 cut(s)	512
BspPI	GGATC	3 cut(s)	916, 929, 995
BspTNI	GGTCTC	1 cut(s)	1137
BsrBI	CCGCTC	1 cut(s)	892
BsrDI	GCAATG	1 cut(s)	514
BsrI	ACTGG	3 cut(s)	427, 555, 821
BssECI	CCNNGG	1 cut(s)	197
BssMI	GATC	5 cut(s)	56, 264, 492, 921, 987
BssSI	CACGAG	1 cut(s)	324
BssT1I	CCWWGG	1 cut(s)	197
Bst2BI	CACGAG	1 cut(s)	324
Bst4CI	ACNGT	5 cut(s)	93, 293, 343, 1031, 1039
Bst6I	CTCTTC	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	31, 194
BstDEI	CTNAG	1 cut(s)	309
BstF5I	GGATG	5 cut(s)	367, 610, 691, 1184, 1233
BstKTI	GATC	5 cut(s)	59, 267, 495, 924, 990
BstMAI	GTCTC	4 cut(s)	349, 1083, 1101, 1137
BstMBI	GATC	5 cut(s)	56, 264, 492, 921, 987
BstMWI	GCNNNNNNNGC	1 cut(s)	520
BstNSI	RCATGY	2 cut(s)	1201, 1249
BstV1I	GCAGC	1 cut(s)	849
BstV2I	GAAGAC	1 cut(s)	803
BstX2I	RGATCY	2 cut(s)	921, 987
BstYI	RGATCY	2 cut(s)	921, 987
BsuI	GTATCC	1 cut(s)	1193
BsuRI	GGCC	4 cut(s)	97, 393, 753, 939
BtrI	CACGTC	1 cut(s)	967
BtsCI	GGATG	5 cut(s)	367, 610, 691, 1184, 1233
BtsIMutI	CAGTG	5 cut(s)	51, 98, 339, 814, 1044
BveI	ACCTGC	1 cut(s)	512
Cac8I	GCNNGC	2 cut(s)	31, 194
CciI	TCATGA	3 cut(s)	558, 913, 958
Cfr13I	GGNCC	1 cut(s)	752
Csp6I	GTAC	3 cut(s)	298, 469, 600
CviQI	GTAC	3 cut(s)	298, 469, 600
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	5 cut(s)	58, 266, 494, 923, 989
DpnII	GATC	5 cut(s)	56, 264, 492, 921, 987
DraI	TTTAAA	1 cut(s)	477
DraIII	CACNNNGTG	1 cut(s)	620
DriI	GACNNNNNGTC	1 cut(s)	554
EaeI	YGGCCR	2 cut(s)	95, 391
Eam1104I	CTCTTC	1 cut(s)	174
Eam1105I	GACNNNNNGTC	1 cut(s)	554
EarI	CTCTTC	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	197
Eco31I	GGTCTC	1 cut(s)	1137
Eco88I	CYCGRG	1 cut(s)	484
EcoT14I	CCWWGG	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	197
Esp3I	CGTCTC	1 cut(s)	1101
FblI	GTMKAC	1 cut(s)	1164
Fnu4HI	GCNGC	1 cut(s)	838
FokI	GGATG	5 cut(s)	354, 597, 698, 1191, 1240
Fsp4HI	GCNGC	1 cut(s)	838
FspBI	CTAG	1 cut(s)	573
GluI	GCNGC	1 cut(s)	838
GsaI	CCCAGC	1 cut(s)	906
HaeIII	GGCC	4 cut(s)	97, 393, 753, 939
HincII	GTYRAC	4 cut(s)	63, 832, 1165, 1210
HindII	GTYRAC	4 cut(s)	63, 832, 1165, 1210
HinfI	GANTC	8 cut(s)	164, 254, 562, 623, 718, 820, 1024, 1080
HphI	GGTGA	4 cut(s)	267, 547, 668, 872
Hpy166II	GTNNAC	6 cut(s)	63, 673, 832, 970, 1165, 1210
Hpy188I	TCNGA	3 cut(s)	253, 497, 1252
Hpy8I	GTNNAC	6 cut(s)	63, 673, 832, 970, 1165, 1210
HpyAV	CCTTC	4 cut(s)	74, 779, 862, 1153
HpyCH4III	ACNGT	5 cut(s)	93, 293, 343, 1031, 1039
HpyCH4IV	ACGT	1 cut(s)	966
HpyCH4V	TGCA	5 cut(s)	29, 192, 507, 587, 788
HpyF10VI	GCNNNNNNNGC	1 cut(s)	520
HpyF3I	CTNAG	1 cut(s)	309
HpySE526I	ACGT	1 cut(s)	966
Kzo9I	GATC	5 cut(s)	56, 264, 492, 921, 987
LmnI	GCTCC	2 cut(s)	771, 897
Lsp1109I	GCAGC	1 cut(s)	849
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	1 cut(s)	573
MaeII	ACGT	1 cut(s)	966
MaeIII	GTNAC	2 cut(s)	568, 649
MalI	GATC	5 cut(s)	58, 266, 494, 923, 989
MbiI	CCGCTC	1 cut(s)	892
MboI	GATC	5 cut(s)	56, 264, 492, 921, 987
MboII	GAAGA	5 cut(s)	161, 356, 550, 803, 1124
MflI	RGATCY	2 cut(s)	921, 987
MlsI	TGGCCA	2 cut(s)	97, 393
MluCI	AATT	8 cut(s)	8, 12, 71, 210, 224, 279, 472, 516
MluNI	TGGCCA	2 cut(s)	97, 393
MlyI	GAGTC	2 cut(s)	158, 727
Mox20I	TGGCCA	2 cut(s)	97, 393
MscI	TGGCCA	2 cut(s)	97, 393
MseI	TTAA	5 cut(s)	11, 38, 213, 476, 1076
MslI	CAYNNNNRTG	2 cut(s)	733, 1055
Msp20I	TGGCCA	2 cut(s)	97, 393
MspA1I	CMGCKG	2 cut(s)	705, 1189
Mva1269I	GAATGC	1 cut(s)	31
MwoI	GCNNNNNNNGC	1 cut(s)	520
NdeII	GATC	5 cut(s)	56, 264, 492, 921, 987
NlaIV	GGNNCC	4 cut(s)	767, 923, 1045, 1062
NmuCI	GTSAC	1 cut(s)	568
NspI	RCATGY	2 cut(s)	1201, 1249
PagI	TCATGA	3 cut(s)	558, 913, 958
PaqCI	CACCTGC	1 cut(s)	512
PciI	ACATGT	1 cut(s)	1245
PctI	GAATGC	1 cut(s)	31
PfeI	GAWTC	6 cut(s)	254, 562, 623, 820, 1024, 1080
PflMI	CCANNNNNTGG	1 cut(s)	433
PkrI	GCNGC	1 cut(s)	839
PleI	GAGTC	2 cut(s)	158, 726
PpsI	GAGTC	2 cut(s)	158, 726
PscI	ACATGT	1 cut(s)	1245
PshBI	ATTAAT	1 cut(s)	11
PspFI	CCCAGC	1 cut(s)	902
PspN4I	GGNNCC	4 cut(s)	767, 923, 1045, 1062
PspPI	GGNCC	1 cut(s)	752
PsuI	RGATCY	2 cut(s)	921, 987
PvuII	CAGCTG	1 cut(s)	705
RsaI	GTAC	3 cut(s)	299, 470, 601
RsaNI	GTAC	3 cut(s)	298, 469, 600
RseI	CAYNNNNRTG	2 cut(s)	733, 1055
SalI	GTCGAC	1 cut(s)	1163
SaqAI	TTAA	5 cut(s)	11, 38, 213, 476, 1076
SatI	GCNGC	1 cut(s)	838
Sau3AI	GATC	5 cut(s)	56, 264, 492, 921, 987
Sau96I	GGNCC	1 cut(s)	752
SchI	GAGTC	2 cut(s)	158, 727
SfaNI	GCATC	1 cut(s)	223
SmiMI	CAYNNNNRTG	2 cut(s)	733, 1055
SmlI	CTYRAG	1 cut(s)	825
SmoI	CTYRAG	1 cut(s)	825
Sse9I	AATT	8 cut(s)	8, 12, 71, 210, 224, 279, 472, 516
SsiI	CCGC	3 cut(s)	835, 890, 1189
SspMI	CTAG	1 cut(s)	573
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	5 cut(s)	93, 293, 343, 1031, 1039
TaiI	ACGT	1 cut(s)	969
TaqI	TCGA	4 cut(s)	162, 978, 1141, 1164
TasI	AATT	8 cut(s)	8, 12, 71, 210, 224, 279, 472, 516
TatI	WGTACW	1 cut(s)	468
TfiI	GAWTC	6 cut(s)	254, 562, 623, 820, 1024, 1080
Tru1I	TTAA	5 cut(s)	11, 38, 213, 476, 1076
Tru9I	TTAA	5 cut(s)	11, 38, 213, 476, 1076
TscAI	CASTG	5 cut(s)	51, 98, 346, 821, 1044
TseFI	GTSAC	1 cut(s)	568
TseI	GCWGC	1 cut(s)	837
Tsp45I	GTSAC	1 cut(s)	568
TspDTI	ATGAA	5 cut(s)	217, 356, 575, 947, 1212
TspGWI	ACGGA	1 cut(s)	1036
TspRI	CASTG	5 cut(s)	51, 98, 346, 821, 1044
Van91I	CCANNNNNTGG	1 cut(s)	433
VspI	ATTAAT	1 cut(s)	11
XapI	RAATTY	1 cut(s)	224
XceI	RCATGY	2 cut(s)	1201, 1249
XmiI	GTMKAC	1 cut(s)	1164
XspI	CTAG	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.