Rh7CG438200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001689
Physical Location & Seq
Forward (+)
57321982 .. 57326077
4096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG438200.1

Sequence Viewer

Length: 264 bp
ATGAAAGTCAAGTCAATGGTCACAACCATTTTGGTTTTTAAGATGAAAATAAAAACAATTGACTTTGGATTCAGCGGAGACGAAGCCGGCCTTTCTTGTTCTTATTGGGTCTACAAAAAGGAGAAAACTTTTCAGTCTCCAGTGGTCTCATCATCATCAGGCAAGTTACTCAACAGGAATGTGCAAGCTTTACAGGCAAAAGGTTGTGAAGTTCAGGTTTTAAGACCTTCAGCTGAAGTTGATGATGGCAAAATCAATAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.65

Weight (kDa)

9.55

Isoelectric Point (pI)

34.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 111
AciI CCGC 1 cut(s) 75
AcuI CTGAAG 2 cut(s) 213, 255
AluBI AGCT 2 cut(s) 188, 233
AluI AGCT 2 cut(s) 188, 233
Alw26I GTCTC 3 cut(s) 72, 141, 151
AoxI GGCC 1 cut(s) 88
BccI CCATC 1 cut(s) 239
BcoDI GTCTC 3 cut(s) 72, 141, 151
BpmI CTGGAG 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 151
Bse118I RCCGGY 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 140
BseNI ACTGG 1 cut(s) 140
BshFI GGCC 1 cut(s) 90
BsiSI CCGG 1 cut(s) 87
BsmAI GTCTC 3 cut(s) 72, 141, 151
BsmBI CGTCTC 1 cut(s) 72
BsnI GGCC 1 cut(s) 90
Bso31I GGTCTC 1 cut(s) 151
BspACI CCGC 1 cut(s) 75
BspANI GGCC 1 cut(s) 90
BspTNI GGTCTC 1 cut(s) 151
BsrFI RCCGGY 1 cut(s) 86
BsrI ACTGG 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 86
BstC8I GCNNGC 2 cut(s) 88, 186
BstMAI GTCTC 3 cut(s) 72, 141, 151
BstMWI GCNNNNNNNGC 1 cut(s) 194
BsuRI GGCC 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 2 cut(s) 88, 186
Cfr10I RCCGGY 1 cut(s) 86
CviJI RGCY 4 cut(s) 86, 90, 188, 233
CviKI_1 RGCY 4 cut(s) 86, 90, 188, 233
Eco31I GGTCTC 1 cut(s) 151
Eco57I CTGAAG 2 cut(s) 213, 255
Esp3I CGTCTC 1 cut(s) 72
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FblI GTMKAC 1 cut(s) 111
GsuI CTGGAG 1 cut(s) 123
HaeIII GGCC 1 cut(s) 90
HapII CCGG 1 cut(s) 87
HindIII AAGCTT 1 cut(s) 186
HinfI GANTC 1 cut(s) 69
HpaII CCGG 1 cut(s) 87
Hpy166II GTNNAC 1 cut(s) 112
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 1 cut(s) 237
HpyCH4V TGCA 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
KroI GCCGGC 1 cut(s) 86
KroNI GCCGGC 1 cut(s) 88
LpnPI CCDG 6 cut(s) 100, 144, 153, 160, 179, 200
MaeIII GTNAC 2 cut(s) 19, 165
MfeI CAATTG 1 cut(s) 57
MluCI AATT 1 cut(s) 57
MroNI GCCGGC 1 cut(s) 86
MseI TTAA 2 cut(s) 39, 221
MspA1I CMGCKG 2 cut(s) 75, 233
MspI CCGG 1 cut(s) 87
MunI CAATTG 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 194
NaeI GCCGGC 1 cut(s) 88
NgoMIV GCCGGC 1 cut(s) 86
NmuCI GTSAC 1 cut(s) 19
PdiI GCCGGC 1 cut(s) 88
PfeI GAWTC 1 cut(s) 69
PvuII CAGCTG 1 cut(s) 233
SaqAI TTAA 2 cut(s) 39, 221
SetI ASST 6 cut(s) 190, 205, 219, 229, 235, 263
Sse9I AATT 1 cut(s) 57
SsiI CCGC 1 cut(s) 75
TasI AATT 1 cut(s) 57
TfiI GAWTC 1 cut(s) 69
Tru1I TTAA 2 cut(s) 39, 221
Tru9I TTAA 2 cut(s) 39, 221
TscAI CASTG 1 cut(s) 147
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 2 cut(s) 17, 59
TspRI CASTG 1 cut(s) 147
XmiI GTMKAC 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.