Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001689

Physical Location & Seq

Genomic Coordinates Reverse (-)

13901055 .. 13906231

Gene Structure 5177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00229430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGACGGGGTTTGTCAGCTGTGAGATTTTGAGTCTTAGAAAAAAGGCATGGAGAGGGGTCAATGGTCCTGCATTCGGGCCCTTTGGTTGGTTCGGATATACACCTGTTTCAGCAATGGGAGCTTTGCACTGGATTCCTCAAGTTGATCGGAGCGATTACATTGTTTCTGTGGAAGTCCACAAGGAGAAATTTCACCAAATAAGGCTCCCCAAAAGTTGCAGAACTCATGACAGGATTATTGAAATGGGAGGCGCATTGGGTTTTGTCATTCATGAGGAGATAAACCGCATTGATGTCTGGATTTTGAAGGGTTTCTGTGGGGAAGTCTGGACAAAGAATCACAGTATCAAAGTGGGTTCCATTATAGACATGATTCCCTATTTCAGTTTAAGGATCAAGGGAGATATTATTTTCAAGAGAGACGAAGATGGCTCGCTATATGCTTATGACTTTCAGCAAGAAGACTTGACGAAGGTTGAGATGGTAGAGGAATGTATCCCAACGTCTTTCTGCTACATGCCTACCTCATGTCAACAGCCTTGTATCATGGATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

185

Amino Acids

21.18

Weight (kDa)

6.06

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	6 - 161	9e-10	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30670 FvH4_5g30670 FvH4_5g30670 FvH4_5g31300
malus_domestica	MD15G1404600.v1.1
prunus_persica	Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1
pyrus_communis	pycom15g36200
rosa_chinensis	RchiOBHm_Chr7g0218801 RchiOBHm_Chr7g0225531 RchiOBHm_Chr7g0226391 RchiOBHm_Chr7g0231221
rosa_laevigata	RLG00000001428 RLG00000001721 RLG00000001808 RLG00000002341
rosa_multiflora	Rmu_sc0003876.1_g000039 Rmu_sc0004426.1_g000001 Rmu_sc0004571.1_g000021 Rmu_sc0012403.1_g000002 Rmu_sc0025113.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229430 Rroxscaffold_3G00233700
rosa_rugosa	Rorug07G0230700 Rorug07G0237000 Rorug07G0265200
rosa_samantha	Rh7AG321300 Rh7AG322200 Rh7AG372900 Rh7AG385100 Rh7AG418400 Rh7BG365200 Rh7BG371000 Rh7BG394100 Rh7CG337800 Rh7CG391100 Rh7CG404500 Rh7CG438200 Rh7DG376000 Rh7DG384200 Rh7DG412400
rosa_wichuraiana	Rw7G031740 Rw7G032190 Rw7G032350 Rw7G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	286
AclWI	GGATC	1 cut(s)	401
AcsI	RAATTY	1 cut(s)	188
AfiI	CCNNNNNNNGG	2 cut(s)	74, 87
AgsI	TTSAA	3 cut(s)	242, 307, 415
AluBI	AGCT	2 cut(s)	18, 122
AluI	AGCT	2 cut(s)	18, 122
Alw26I	GTCTC	1 cut(s)	414
AlwI	GGATC	1 cut(s)	401
AoxI	GGCC	1 cut(s)	77
ApaI	GGGCCC	1 cut(s)	81
ApoI	RAATTY	1 cut(s)	188
Asp700I	GAANNNNTTC	1 cut(s)	311
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	3 cut(s)	65, 77, 78
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	81
BanII	GRGCYC	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	468
BccI	CCATC	3 cut(s)	422, 475, 545
BciVI	GTATCC	1 cut(s)	506
BcoDI	GTCTC	1 cut(s)	414
BfuI	GTATCC	1 cut(s)	506
Bme18I	GGWCC	1 cut(s)	65
BmgT120I	GGNCC	3 cut(s)	65, 77, 78
BmiI	GGNNCC	3 cut(s)	79, 206, 358
BpiI	GAAGAC	1 cut(s)	468
BpuEI	CTTGAG	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 87
Bse1I	ACTGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	556
BseLI	CCNNNNNNNGG	2 cut(s)	74, 87
BseMI	GCAATG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	1 cut(s)	290
BseSI	GKGCMC	1 cut(s)	81
BshFI	GGCC	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	74, 87
BsmAI	GTCTC	1 cut(s)	414
BsmBI	CGTCTC	1 cut(s)	414
BsmI	GAATGC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	79
Bsp120I	GGGCCC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	145, 393
BspACI	CCGC	1 cut(s)	286
BspANI	GGCC	1 cut(s)	79
BspHI	TCATGA	2 cut(s)	226, 271
BspLI	GGNNCC	3 cut(s)	79, 206, 358
BspPI	GGATC	1 cut(s)	401
BsrDI	GCAATG	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	134
BssMI	GATC	2 cut(s)	145, 393
Bst4CI	ACNGT	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	434
BstDEI	CTNAG	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	556
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	2 cut(s)	148, 396
BstMAI	GTCTC	1 cut(s)	414
BstMBI	GATC	2 cut(s)	145, 393
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	520
BstSLI	GKGCMC	1 cut(s)	81
BstV2I	GAAGAC	1 cut(s)	468
BsuI	GTATCC	1 cut(s)	506
BsuRI	GGCC	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	556
BtsIMutI	CAGTG	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	434
CciI	TCATGA	2 cut(s)	226, 271
CfoI	GCGC	1 cut(s)	254
Cfr13I	GGNCC	3 cut(s)	65, 77, 78
CviAII	CATG	7 cut(s)	48, 227, 272, 370, 517, 528, 547
CviJI	RGCY	6 cut(s)	18, 79, 122, 205, 432, 538
CviKI_1	RGCY	6 cut(s)	18, 79, 122, 205, 432, 538
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	2 cut(s)	147, 395
DpnII	GATC	2 cut(s)	145, 393
Eco24I	GRGCYC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	81
Esp3I	CGTCTC	1 cut(s)	414
FaeI	CATG	7 cut(s)	51, 230, 275, 373, 520, 531, 550
FatI	CATG	7 cut(s)	47, 226, 271, 369, 516, 527, 546
FriOI	GRGCYC	1 cut(s)	81
GlaI	GCGC	1 cut(s)	253
HaeIII	GGCC	1 cut(s)	79
HhaI	GCGC	1 cut(s)	254
Hin1II	CATG	7 cut(s)	51, 230, 275, 373, 520, 531, 550
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HincII	GTYRAC	1 cut(s)	533
HindII	GTYRAC	1 cut(s)	533
HinfI	GANTC	4 cut(s)	31, 133, 337, 373
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	2 cut(s)	178, 533
Hpy188I	TCNGA	2 cut(s)	95, 150
Hpy188III	TCNNGA	5 cut(s)	227, 272, 298, 328, 415
Hpy8I	GTNNAC	2 cut(s)	178, 533
HpyAV	CCTTC	2 cut(s)	301, 466
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4IV	ACGT	1 cut(s)	503
HpyCH4V	TGCA	3 cut(s)	71, 127, 219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	35
HpySE526I	ACGT	1 cut(s)	503
Hsp92II	CATG	7 cut(s)	51, 230, 275, 373, 520, 531, 550
HspAI	GCGC	1 cut(s)	252
Kzo9I	GATC	2 cut(s)	145, 393
LmnI	GCTCC	3 cut(s)	119, 150, 210
LpnPI	CCDG	6 cut(s)	81, 115, 117, 217, 283, 313
MaeII	ACGT	1 cut(s)	503
MalI	GATC	2 cut(s)	147, 395
MboI	GATC	2 cut(s)	145, 393
MboII	GAAGA	2 cut(s)	437, 473
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	1 cut(s)	188
MlyI	GAGTC	1 cut(s)	40
MnlI	CCTC	6 cut(s)	47, 147, 242, 268, 481, 535
MroXI	GAANNNNTTC	1 cut(s)	311
MseI	TTAA	1 cut(s)	389
MspA1I	CMGCKG	1 cut(s)	18
Mva1269I	GAATGC	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	2 cut(s)	145, 393
NlaIII	CATG	7 cut(s)	51, 230, 275, 373, 520, 531, 550
NlaIV	GGNNCC	3 cut(s)	79, 206, 358
NspI	RCATGY	1 cut(s)	520
PagI	TCATGA	2 cut(s)	226, 271
PctI	GAATGC	1 cut(s)	71
PdmI	GAANNNNTTC	1 cut(s)	311
PfeI	GAWTC	3 cut(s)	133, 337, 373
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
PspN4I	GGNNCC	3 cut(s)	79, 206, 358
PspOMI	GGGCCC	1 cut(s)	77
PspPI	GGNCC	3 cut(s)	65, 77, 78
PvuII	CAGCTG	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	389
Sau3AI	GATC	2 cut(s)	145, 393
Sau96I	GGNCC	3 cut(s)	65, 77, 78
SchI	GAGTC	1 cut(s)	40
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	6 cut(s)	20, 106, 124, 477, 506, 527
SinI	GGWCC	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
Sse9I	AATT	1 cut(s)	188
SsiI	CCGC	1 cut(s)	286
TaaI	ACNGT	1 cut(s)	344
TaiI	ACGT	1 cut(s)	506
TasI	AATT	1 cut(s)	188
TfiI	GAWTC	3 cut(s)	133, 337, 373
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TscAI	CASTG	1 cut(s)	134
TspDTI	ATGAA	1 cut(s)	260
TspRI	CASTG	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	65
XapI	RAATTY	1 cut(s)	188
XceI	RCATGY	1 cut(s)	520
XmnI	GAANNNNTTC	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.