Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001689

Physical Location & Seq

Genomic Coordinates Forward (+)

19604431 .. 19605373

Gene Structure 943 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001721

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCATCTGTTCCAGAAGAGAATTTAAACACTGTCTCAGTTGAATCAGAACTTCTACAACCAAATTTCATCCCCAGTTATAGCAACTCGTCCCTAAACTCAACAAAATTTTCTGTTCAGTTTCTTGCAATTAAAAATGGTAAGTCTGAGGTAGGAGGGTACAGTTTAAATTGCTTGAGAAGTATCAGAGCCACATTGCTTGATAACAAAGTTAAGAAGGGAGGACTTATAGTCTTGAATCCTGTGACCAGGATGCTGATTGCTCTTCCTCTTGGTACCTTACATCATCCATATAATAAATCCTCTGGTTTTGCATTGAGTGATGTCACCGGTGAACATAAAATAGTCCATTTGTTTCGGGATGAATTGGGGTTTGTCAGCTGTGAGATTTTGAGTCTTGGGAGAAAAGCATGGAGAGAGGTCAATGGTCCTGGGTTTGGGCTCTTTGGTTGGTTTGGATATGCACCTGTTTCAGCAATTGGTGCTTTTTACTGGATTCCTCAGGGTTTCTTTGGGGAAGTCTGGACAAAGAATCACAGTATCACAGTGGGTTCCATTATAGACATGATTCCTTATCTCTGTTTAAGAATCAAGGGAGATATTATTTTCAAGAGAGATGAAGATGGCTCGTTATATGCTTATAACTTTGAACATCAAGTAATGACAAAGGTTGAGATGGTAAAGGGGCGTATCCCAACGTCGTCTGCTACATTCCTACCTCATGTCAACAACCTTGTATCATGGATGGATGGAAGTCTGGACGTGCATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

258

Amino Acids

28.52

Weight (kDa)

7.09

Isoelectric Point (pI)

29.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30670 FvH4_5g30670 FvH4_5g30670 FvH4_5g31300
malus_domestica	MD15G1404600.v1.1
prunus_persica	Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1
pyrus_communis	pycom15g36200
rosa_chinensis	RchiOBHm_Chr7g0218801 RchiOBHm_Chr7g0225531 RchiOBHm_Chr7g0226391 RchiOBHm_Chr7g0231221
rosa_laevigata	RLG00000001428 RLG00000001721 RLG00000001808 RLG00000002341
rosa_multiflora	Rmu_sc0003876.1_g000039 Rmu_sc0004426.1_g000001 Rmu_sc0004571.1_g000021 Rmu_sc0012403.1_g000002 Rmu_sc0025113.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229430 Rroxscaffold_3G00233700
rosa_rugosa	Rorug07G0230700 Rorug07G0237000 Rorug07G0265200
rosa_samantha	Rh7AG321300 Rh7AG322200 Rh7AG372900 Rh7AG385100 Rh7AG418400 Rh7BG365200 Rh7BG371000 Rh7BG394100 Rh7CG337800 Rh7CG391100 Rh7CG404500 Rh7CG438200 Rh7DG376000 Rh7DG384200 Rh7DG412400
rosa_wichuraiana	Rw7G031740 Rw7G032190 Rw7G032350 Rw7G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	642
Acc65I	GGTACC	1 cut(s)	275
AccB1I	GGYRCC	1 cut(s)	275
AcsI	RAATTY	3 cut(s)	22, 64, 107
AfaI	GTAC	2 cut(s)	161, 277
AfiI	CCNNNNNNNGG	1 cut(s)	437
AgeI	ACCGGT	1 cut(s)	329
AgsI	TTSAA	4 cut(s)	44, 238, 610, 650
AhdI	GACNNNNNGTC	1 cut(s)	230
AjiI	CACGTC	1 cut(s)	763
AjnI	CCWGG	2 cut(s)	248, 430
AluBI	AGCT	1 cut(s)	381
AluI	AGCT	1 cut(s)	381
Alw26I	GTCTC	1 cut(s)	40
ApoI	RAATTY	3 cut(s)	22, 64, 107
AsiGI	ACCGGT	1 cut(s)	329
Asp718I	GGTACC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	428
AsuHPI	GGTGA	2 cut(s)	319, 344
AvaII	GGWCC	1 cut(s)	428
AxyI	CCTNAGG	1 cut(s)	501
BanI	GGYRCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	444
BccI	CCATC	4 cut(s)	617, 670, 739, 743
BciT130I	CCWGG	2 cut(s)	250, 432
BciVI	GTATCC	1 cut(s)	701
BcoDI	GTCTC	1 cut(s)	40
BfuI	GTATCC	1 cut(s)	701
Bme1390I	CCNGG	2 cut(s)	250, 432
Bme18I	GGWCC	1 cut(s)	428
BmeRI	GACNNNNNGTC	1 cut(s)	230
BmgBI	CACGTC	1 cut(s)	763
BmgT120I	GGNCC	1 cut(s)	428
BmiI	GGNNCC	2 cut(s)	277, 553
BmrFI	CCNGG	2 cut(s)	250, 432
BmrI	ACTGGG	1 cut(s)	69
BmsI	GCATC	2 cut(s)	14, 243
BmuI	ACTGGG	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	431
BsaWI	WCCGGW	1 cut(s)	329
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse118I	RCCGGY	1 cut(s)	329
Bse1I	ACTGG	2 cut(s)	75, 497
Bse21I	CCTNAGG	1 cut(s)	501
Bse3DI	GCAATG	1 cut(s)	194
BseBI	CCWGG	2 cut(s)	250, 432
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	6 cut(s)	69, 258, 286, 367, 750, 754
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMI	GCAATG	1 cut(s)	194
BseMII	CTCAG	3 cut(s)	51, 138, 515
BseNI	ACTGG	2 cut(s)	75, 497
BshNI	GGYRCC	1 cut(s)	275
BshTI	ACCGGT	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	1 cut(s)	437
BsmAI	GTCTC	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	444
BspCNI	CTCAG	3 cut(s)	50, 139, 514
BspLI	GGNNCC	2 cut(s)	277, 553
BspQI	GCTCTTC	1 cut(s)	270
BspT107I	GGYRCC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	329
BsrI	ACTGG	2 cut(s)	75, 497
BssAI	RCCGGY	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	431
Bst2UI	CCWGG	2 cut(s)	250, 432
Bst4CI	ACNGT	4 cut(s)	34, 164, 539, 547
Bst6I	CTCTTC	2 cut(s)	12, 270
BstAPI	GCANNNNNTGC	1 cut(s)	482
BstDEI	CTNAG	3 cut(s)	37, 147, 501
BstF5I	GGATG	6 cut(s)	69, 258, 286, 367, 750, 754
BstMAI	GTCTC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstNI	CCWGG	2 cut(s)	250, 432
BstSCI	CCNGG	2 cut(s)	248, 430
Bsu36I	CCTNAGG	1 cut(s)	501
BsuI	GTATCC	1 cut(s)	701
BtrI	CACGTC	1 cut(s)	763
BtsCI	GGATG	6 cut(s)	69, 258, 286, 367, 750, 754
BtsIMutI	CAGTG	2 cut(s)	30, 552
Cfr10I	RCCGGY	1 cut(s)	329
Cfr13I	GGNCC	1 cut(s)	428
Csp6I	GTAC	2 cut(s)	160, 276
CspAI	ACCGGT	1 cut(s)	329
CspCI	CAANNNNNGTGG	2 cut(s)	181, 216
CviAII	CATG	5 cut(s)	411, 565, 722, 741, 767
CviJI	RGCY	4 cut(s)	191, 381, 442, 627
CviKI_1	RGCY	4 cut(s)	191, 381, 442, 627
CviQI	GTAC	2 cut(s)	160, 276
DdeI	CTNAG	3 cut(s)	37, 147, 501
DraI	TTTAAA	2 cut(s)	27, 168
DriI	GACNNNNNGTC	1 cut(s)	230
Eam1104I	CTCTTC	2 cut(s)	12, 270
Eam1105I	GACNNNNNGTC	1 cut(s)	230
EarI	CTCTTC	2 cut(s)	12, 270
Eco24I	GRGCYC	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	428
Eco81I	CCTNAGG	1 cut(s)	501
EcoRII	CCWGG	2 cut(s)	248, 430
EcoT38I	GRGCYC	1 cut(s)	444
FaeI	CATG	5 cut(s)	414, 568, 725, 744, 770
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	5 cut(s)	410, 564, 721, 740, 766
FokI	GGATG	6 cut(s)	56, 265, 273, 374, 757, 761
FriOI	GRGCYC	1 cut(s)	444
HapII	CCGG	1 cut(s)	330
Hin1II	CATG	5 cut(s)	414, 568, 725, 744, 770
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HinfI	GANTC	7 cut(s)	44, 238, 394, 496, 532, 568, 588
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	2 cut(s)	319, 344
Hpy166II	GTNNAC	2 cut(s)	335, 727
Hpy188I	TCNGA	3 cut(s)	49, 148, 188
Hpy188III	TCNNGA	6 cut(s)	14, 235, 359, 523, 610, 758
Hpy8I	GTNNAC	2 cut(s)	335, 727
Hpy99I	CGWCG	1 cut(s)	703
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	4 cut(s)	34, 164, 539, 547
HpyCH4IV	ACGT	2 cut(s)	698, 762
HpyCH4V	TGCA	4 cut(s)	128, 314, 464, 766
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	3 cut(s)	37, 147, 501
HpySE526I	ACGT	2 cut(s)	698, 762
Hsp92II	CATG	5 cut(s)	414, 568, 725, 744, 770
KpnI	GGTACC	1 cut(s)	279
LguI	GCTCTTC	1 cut(s)	270
LweI	GCATC	2 cut(s)	14, 243
MaeII	ACGT	2 cut(s)	698, 762
MaeIII	GTNAC	2 cut(s)	244, 325
MboII	GAAGA	3 cut(s)	29, 257, 632
MfeI	CAATTG	1 cut(s)	477
MhlI	GDGCHC	1 cut(s)	444
MluCI	AATT	7 cut(s)	22, 64, 107, 129, 169, 365, 477
MlyI	GAGTC	1 cut(s)	403
MnlI	CCTC	8 cut(s)	142, 149, 215, 279, 313, 412, 510, 729
MseI	TTAA	5 cut(s)	26, 132, 167, 213, 584
MspA1I	CMGCKG	1 cut(s)	381
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	2 cut(s)	250, 432
MunI	CAATTG	1 cut(s)	477
MvaI	CCWGG	2 cut(s)	250, 432
MwoI	GCNNNNNNNGC	1 cut(s)	482
NlaIII	CATG	5 cut(s)	414, 568, 725, 744, 770
NlaIV	GGNNCC	2 cut(s)	277, 553
NmuCI	GTSAC	2 cut(s)	244, 325
PciSI	GCTCTTC	1 cut(s)	270
PfeI	GAWTC	6 cut(s)	44, 238, 496, 532, 568, 588
PinAI	ACCGGT	1 cut(s)	329
PleI	GAGTC	1 cut(s)	402
PpsI	GAGTC	1 cut(s)	402
PsiI	TTATAA	1 cut(s)	642
Psp6I	CCWGG	2 cut(s)	248, 430
PspGI	CCWGG	2 cut(s)	248, 430
PspN4I	GGNNCC	2 cut(s)	277, 553
PspPI	GGNCC	1 cut(s)	428
PvuII	CAGCTG	1 cut(s)	381
RsaI	GTAC	2 cut(s)	161, 277
RsaNI	GTAC	2 cut(s)	160, 276
SapI	GCTCTTC	1 cut(s)	270
SaqAI	TTAA	5 cut(s)	26, 132, 167, 213, 584
Sau96I	GGNCC	1 cut(s)	428
SchI	GAGTC	1 cut(s)	403
ScrFI	CCNGG	2 cut(s)	250, 432
SduI	GDGCHC	1 cut(s)	444
SfaNI	GCATC	2 cut(s)	14, 243
SgrAI	CRCCGGYG	1 cut(s)	329
SinI	GGWCC	1 cut(s)	428
SmlI	CTYRAG	1 cut(s)	175
SmoI	CTYRAG	1 cut(s)	175
Sse9I	AATT	7 cut(s)	22, 64, 107, 129, 169, 365, 477
StyD4I	CCNGG	2 cut(s)	248, 430
TaaI	ACNGT	4 cut(s)	34, 164, 539, 547
TaiI	ACGT	2 cut(s)	701, 765
TasI	AATT	7 cut(s)	22, 64, 107, 129, 169, 365, 477
TfiI	GAWTC	6 cut(s)	44, 238, 496, 532, 568, 588
Tru1I	TTAA	5 cut(s)	26, 132, 167, 213, 584
Tru9I	TTAA	5 cut(s)	26, 132, 167, 213, 584
TscAI	CASTG	2 cut(s)	37, 552
TseFI	GTSAC	2 cut(s)	244, 325
Tsp45I	GTSAC	2 cut(s)	244, 325
TspDTI	ATGAA	3 cut(s)	58, 378, 633
TspRI	CASTG	2 cut(s)	37, 552
VpaK11BI	GGWCC	1 cut(s)	428
XapI	RAATTY	3 cut(s)	22, 64, 107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.