Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001689

Physical Location & Seq

Genomic Coordinates Reverse (-)

51909231 .. 51909875

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG404500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCATCTGTTCCAGAAAAGAATTTAAACACTGTCTCAGTTGAATCAGAACTTCTACGGCCAAATTTCATCCCCAGTTATAGCAACTCGTCCCTAAACTCAACAAAATTTTTTGTTCAGTTTCTTGCAATTAAAAATGGTAAGTCTGAGGTAGGAGGGTACAGTTTAAATTGCTTGAGAAGTATCAGAGCCACATTGCTTGATAACAAAGTTAAGAAGGGAGGACTTATAGTCTTGAATCCTGTGACCAGGAAGCTGATTGCTCTTCCTCTTGGTACCTTACATCATCCATATAATGAATCCTATGGTTTTGCATTGAGTGATGTCACCGGTGAACATAAAATAGTCCATTTGTTTCAGGATGAATTGGGGTTTGTCAGCTGTGAGATTTTGAGTCTTGGGAGAAAAGCGTGGAGAGAGGTCAATGGTCCTGGGTTTGGGCTCTTTGGTTGGTTTGGATATGCACCTATTTCAGCAATTGGTGCTTCTTTGCACTGGATTCCTCAGGTTGATTGGAGCGATTACATTGTATCTATGGAAGTCGACAAGGAGAAGTTTCACCAAATACCGCTCTCCAAAAGTTGTAGAACTCATGACAGAATTATTGAAATTGGAGACACATTGGCTAGCTTTTGTCATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

214

Amino Acids

23.8

Weight (kDa)

7.73

Isoelectric Point (pI)

27.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	75 - 198	1.2e-07	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30670 FvH4_5g30670 FvH4_5g30670 FvH4_5g31300
malus_domestica	MD15G1404600.v1.1
prunus_persica	Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1
pyrus_communis	pycom15g36200
rosa_chinensis	RchiOBHm_Chr7g0218801 RchiOBHm_Chr7g0225531 RchiOBHm_Chr7g0226391 RchiOBHm_Chr7g0231221
rosa_laevigata	RLG00000001428 RLG00000001721 RLG00000001808 RLG00000002341
rosa_multiflora	Rmu_sc0003876.1_g000039 Rmu_sc0004426.1_g000001 Rmu_sc0004571.1_g000021 Rmu_sc0012403.1_g000002 Rmu_sc0025113.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229430 Rroxscaffold_3G00233700
rosa_rugosa	Rorug07G0230700 Rorug07G0237000 Rorug07G0265200
rosa_samantha	Rh7AG321300 Rh7AG322200 Rh7AG372900 Rh7AG385100 Rh7AG418400 Rh7BG365200 Rh7BG371000 Rh7BG394100 Rh7CG337800 Rh7CG391100 Rh7CG404500 Rh7CG438200 Rh7DG376000 Rh7DG384200 Rh7DG412400
rosa_wichuraiana	Rw7G031740 Rw7G032190 Rw7G032350 Rw7G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	275
AccB1I	GGYRCC	1 cut(s)	275
AccBSI	CCGCTC	1 cut(s)	571
AccI	GTMKAC	1 cut(s)	543
AciI	CCGC	1 cut(s)	569
AcoI	YGGCCR	1 cut(s)	59
AcsI	RAATTY	3 cut(s)	22, 64, 107
AfaI	GTAC	2 cut(s)	161, 277
AfiI	CCNNNNNNNGG	1 cut(s)	437
AgeI	ACCGGT	1 cut(s)	329
AgsI	TTSAA	3 cut(s)	44, 238, 608
AhdI	GACNNNNNGTC	1 cut(s)	230
AjnI	CCWGG	2 cut(s)	248, 430
AluBI	AGCT	3 cut(s)	256, 381, 630
AluI	AGCT	3 cut(s)	256, 381, 630
Alw26I	GTCTC	2 cut(s)	40, 609
AoxI	GGCC	1 cut(s)	59
ApoI	RAATTY	3 cut(s)	22, 64, 107
AsiGI	ACCGGT	1 cut(s)	329
Asp718I	GGTACC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	428
AsuHPI	GGTGA	3 cut(s)	319, 344, 551
AsuNHI	GCTAGC	1 cut(s)	626
AvaII	GGWCC	1 cut(s)	428
AxyI	CCTNAGG	1 cut(s)	504
BanI	GGYRCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	444
BceAI	ACGGC	1 cut(s)	74
BciT130I	CCWGG	2 cut(s)	250, 432
BcoDI	GTCTC	2 cut(s)	40, 609
BfaI	CTAG	1 cut(s)	627
Bme1390I	CCNGG	2 cut(s)	250, 432
Bme18I	GGWCC	1 cut(s)	428
BmeRI	GACNNNNNGTC	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	428
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	2 cut(s)	250, 432
BmrI	ACTGGG	1 cut(s)	69
BmsI	GCATC	1 cut(s)	14
BmtI	GCTAGC	1 cut(s)	630
BmuI	ACTGGG	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	431
BsaWI	WCCGGW	1 cut(s)	329
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse118I	RCCGGY	1 cut(s)	329
Bse1I	ACTGG	2 cut(s)	75, 500
Bse21I	CCTNAGG	1 cut(s)	504
Bse3DI	GCAATG	1 cut(s)	194
BseBI	CCWGG	2 cut(s)	250, 432
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	3 cut(s)	69, 286, 367
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMI	GCAATG	1 cut(s)	194
BseMII	CTCAG	3 cut(s)	51, 138, 518
BseNI	ACTGG	2 cut(s)	75, 500
BshFI	GGCC	1 cut(s)	61
BshNI	GGYRCC	1 cut(s)	275
BshTI	ACCGGT	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	1 cut(s)	437
BsmAI	GTCTC	2 cut(s)	40, 609
BsmFI	GGGAC	1 cut(s)	76
BsnI	GGCC	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	444
BspACI	CCGC	1 cut(s)	569
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	3 cut(s)	50, 139, 517
BspHI	TCATGA	2 cut(s)	592, 641
BspLI	GGNNCC	1 cut(s)	277
BspOI	GCTAGC	1 cut(s)	630
BspQI	GCTCTTC	1 cut(s)	270
BspT107I	GGYRCC	1 cut(s)	275
BsrBI	CCGCTC	1 cut(s)	571
BsrDI	GCAATG	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	329
BsrI	ACTGG	2 cut(s)	75, 500
BssAI	RCCGGY	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	431
Bst2UI	CCWGG	2 cut(s)	250, 432
Bst4CI	ACNGT	2 cut(s)	34, 164
Bst6I	CTCTTC	1 cut(s)	270
BstAPI	GCANNNNNTGC	1 cut(s)	482
BstC8I	GCNNGC	1 cut(s)	628
BstDEI	CTNAG	3 cut(s)	37, 147, 504
BstF5I	GGATG	3 cut(s)	69, 286, 367
BstMAI	GTCTC	2 cut(s)	40, 609
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstNI	CCWGG	2 cut(s)	250, 432
BstSCI	CCNGG	2 cut(s)	248, 430
Bsu36I	CCTNAGG	1 cut(s)	504
BsuRI	GGCC	1 cut(s)	61
BtsCI	GGATG	3 cut(s)	69, 286, 367
BtsIMutI	CAGTG	2 cut(s)	30, 493
Cac8I	GCNNGC	1 cut(s)	628
CciI	TCATGA	2 cut(s)	592, 641
Cfr10I	RCCGGY	1 cut(s)	329
Cfr13I	GGNCC	1 cut(s)	428
Csp6I	GTAC	2 cut(s)	160, 276
CspAI	ACCGGT	1 cut(s)	329
CspCI	CAANNNNNGTGG	2 cut(s)	181, 216
CviAII	CATG	2 cut(s)	593, 642
CviJI	RGCY	7 cut(s)	61, 191, 256, 381, 442, 626, 630
CviKI_1	RGCY	7 cut(s)	61, 191, 256, 381, 442, 626, 630
CviQI	GTAC	2 cut(s)	160, 276
DdeI	CTNAG	3 cut(s)	37, 147, 504
DraI	TTTAAA	2 cut(s)	27, 168
DriI	GACNNNNNGTC	1 cut(s)	230
EaeI	YGGCCR	1 cut(s)	59
Eam1104I	CTCTTC	1 cut(s)	270
Eam1105I	GACNNNNNGTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	428
Eco81I	CCTNAGG	1 cut(s)	504
EcoRII	CCWGG	2 cut(s)	248, 430
EcoT38I	GRGCYC	1 cut(s)	444
FaeI	CATG	2 cut(s)	596, 645
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	2 cut(s)	592, 641
FblI	GTMKAC	1 cut(s)	543
FokI	GGATG	3 cut(s)	56, 273, 374
FriOI	GRGCYC	1 cut(s)	444
FspBI	CTAG	1 cut(s)	627
HaeIII	GGCC	1 cut(s)	61
HapII	CCGG	1 cut(s)	330
Hin1II	CATG	2 cut(s)	596, 645
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HinfI	GANTC	5 cut(s)	44, 238, 299, 394, 499
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	3 cut(s)	319, 344, 551
Hpy166II	GTNNAC	2 cut(s)	335, 544
Hpy188I	TCNGA	3 cut(s)	49, 148, 188
Hpy188III	TCNNGA	5 cut(s)	14, 235, 359, 593, 642
Hpy8I	GTNNAC	2 cut(s)	335, 544
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	2 cut(s)	34, 164
HpyCH4V	TGCA	4 cut(s)	128, 314, 464, 493
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	3 cut(s)	37, 147, 504
Hsp92II	CATG	2 cut(s)	596, 645
KpnI	GGTACC	1 cut(s)	279
LguI	GCTCTTC	1 cut(s)	270
LmnI	GCTCC	1 cut(s)	516
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	627
MaeIII	GTNAC	2 cut(s)	244, 325
MbiI	CCGCTC	1 cut(s)	571
MboII	GAAGA	1 cut(s)	257
MfeI	CAATTG	1 cut(s)	477
MhlI	GDGCHC	1 cut(s)	444
MluCI	AATT	9 cut(s)	22, 64, 107, 129, 169, 365, 477, 600, 609
MlyI	GAGTC	1 cut(s)	403
MnlI	CCTC	6 cut(s)	142, 149, 215, 279, 412, 513
MseI	TTAA	4 cut(s)	26, 132, 167, 213
MspA1I	CMGCKG	1 cut(s)	381
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	2 cut(s)	250, 432
MunI	CAATTG	1 cut(s)	477
MvaI	CCWGG	2 cut(s)	250, 432
MwoI	GCNNNNNNNGC	1 cut(s)	482
NheI	GCTAGC	1 cut(s)	626
NlaIII	CATG	2 cut(s)	596, 645
NlaIV	GGNNCC	1 cut(s)	277
NmuCI	GTSAC	2 cut(s)	244, 325
PagI	TCATGA	2 cut(s)	592, 641
PciSI	GCTCTTC	1 cut(s)	270
PfeI	GAWTC	4 cut(s)	44, 238, 299, 499
PinAI	ACCGGT	1 cut(s)	329
PleI	GAGTC	1 cut(s)	402
PpsI	GAGTC	1 cut(s)	402
Psp6I	CCWGG	2 cut(s)	248, 430
PspGI	CCWGG	2 cut(s)	248, 430
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	1 cut(s)	428
PvuII	CAGCTG	1 cut(s)	381
RsaI	GTAC	2 cut(s)	161, 277
RsaNI	GTAC	2 cut(s)	160, 276
SalI	GTCGAC	1 cut(s)	542
SapI	GCTCTTC	1 cut(s)	270
SaqAI	TTAA	4 cut(s)	26, 132, 167, 213
Sau96I	GGNCC	1 cut(s)	428
SchI	GAGTC	1 cut(s)	403
ScrFI	CCNGG	2 cut(s)	250, 432
SduI	GDGCHC	1 cut(s)	444
SetI	ASST	8 cut(s)	153, 258, 281, 383, 423, 469, 510, 632
SfaNI	GCATC	1 cut(s)	14
SgrAI	CRCCGGYG	1 cut(s)	329
SinI	GGWCC	1 cut(s)	428
SmlI	CTYRAG	1 cut(s)	175
SmoI	CTYRAG	1 cut(s)	175
Sse9I	AATT	9 cut(s)	22, 64, 107, 129, 169, 365, 477, 600, 609
SsiI	CCGC	1 cut(s)	569
SspMI	CTAG	1 cut(s)	627
StyD4I	CCNGG	2 cut(s)	248, 430
TaaI	ACNGT	2 cut(s)	34, 164
TaqI	TCGA	1 cut(s)	543
TasI	AATT	9 cut(s)	22, 64, 107, 129, 169, 365, 477, 600, 609
TfiI	GAWTC	4 cut(s)	44, 238, 299, 499
Tru1I	TTAA	4 cut(s)	26, 132, 167, 213
Tru9I	TTAA	4 cut(s)	26, 132, 167, 213
TscAI	CASTG	2 cut(s)	37, 500
TseFI	GTSAC	2 cut(s)	244, 325
Tsp45I	GTSAC	2 cut(s)	244, 325
TspDTI	ATGAA	4 cut(s)	58, 312, 378, 630
TspRI	CASTG	2 cut(s)	37, 500
VpaK11BI	GGWCC	1 cut(s)	428
XapI	RAATTY	3 cut(s)	22, 64, 107
XmiI	GTMKAC	1 cut(s)	543
XspI	CTAG	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.