Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001689

Physical Location & Seq

Genomic Coordinates Forward (+)

21056844 .. 21057170

Gene Structure 327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0230700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGATCTTCTGCCTCGGCTCCGGTTCCACCTTTAAACAGGCCGTGGATCGCATCGGCAAGCTTTTGCAACTGGGAAAAGTTCACAACATCATCGGAATCACCGCTCCCGAGAACACTCACCAACAAGTCAACTCTCTTAGAATTCCATTATCCAACCTCGATGACTACCAGATCTTCAATCTCGCTATCGACGGTGCCGACGAGGTGGACCCCCACCTCAACGTAGTCAAGGGCCATTGTGGGTACCTCTTGAGAGAGAAATGGTGGAGGGCGCGTGTTAGAAATTCTTGCTGGGTTCAAGAACATGAACGAATCAACGATTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

108

Amino Acids

12.34

Weight (kDa)

6.95

Isoelectric Point (pI)

25.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	32 - 104	2.3e-14	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30670 FvH4_5g30670 FvH4_5g30670 FvH4_5g31300
malus_domestica	MD15G1404600.v1.1
prunus_persica	Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1 Prupe.1G556700_v2.0.a1
pyrus_communis	pycom15g36200
rosa_chinensis	RchiOBHm_Chr7g0218801 RchiOBHm_Chr7g0225531 RchiOBHm_Chr7g0226391 RchiOBHm_Chr7g0231221
rosa_laevigata	RLG00000001428 RLG00000001721 RLG00000001808 RLG00000002341
rosa_multiflora	Rmu_sc0003876.1_g000039 Rmu_sc0004426.1_g000001 Rmu_sc0004571.1_g000021 Rmu_sc0012403.1_g000002 Rmu_sc0025113.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229430 Rroxscaffold_3G00233700
rosa_rugosa	Rorug07G0230700 Rorug07G0237000 Rorug07G0265200
rosa_samantha	Rh7AG321300 Rh7AG322200 Rh7AG372900 Rh7AG385100 Rh7AG418400 Rh7BG365200 Rh7BG371000 Rh7BG394100 Rh7CG337800 Rh7CG391100 Rh7CG404500 Rh7CG438200 Rh7DG376000 Rh7DG384200 Rh7DG412400
rosa_wichuraiana	Rw7G031740 Rw7G032190 Rw7G032350 Rw7G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	243
AccB1I	GGYRCC	2 cut(s)	194, 243
AccBSI	CCGCTC	1 cut(s)	104
AccII	CGCG	1 cut(s)	274
AciI	CCGC	1 cut(s)	102
AclWI	GGATC	1 cut(s)	54
AcsI	RAATTY	2 cut(s)	141, 283
AfaI	GTAC	1 cut(s)	245
AgsI	TTSAA	2 cut(s)	178, 299
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
AlwI	GGATC	1 cut(s)	54
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	2 cut(s)	39, 232
ApoI	RAATTY	2 cut(s)	141, 283
Asp718I	GGTACC	1 cut(s)	243
AspLEI	GCGC	1 cut(s)	274
AspS9I	GGNCC	2 cut(s)	208, 232
AsuHPI	GGTGA	2 cut(s)	91, 110
AvaI	CYCGRG	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	208
BanI	GGYRCC	2 cut(s)	194, 243
BceAI	ACGGC	1 cut(s)	26
BglII	AGATCT	1 cut(s)	171
Bme18I	GGWCC	1 cut(s)	208
BmeT110I	CYCGRG	1 cut(s)	107
BmgT120I	GGNCC	2 cut(s)	208, 232
BmiI	GGNNCC	5 cut(s)	19, 25, 196, 210, 245
BmrI	ACTGGG	1 cut(s)	80
BmsI	GCATC	1 cut(s)	60
BmuI	ACTGGG	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	271
BsaJI	CCNNGG	2 cut(s)	13, 42
BsaWI	WCCGGW	1 cut(s)	20
BsaXI	ACNNNNNCTCC	2 cut(s)	259, 289
Bse1I	ACTGG	1 cut(s)	75
BseDI	CCNNGG	2 cut(s)	13, 42
BseNI	ACTGG	1 cut(s)	75
BseYI	CCCAGC	1 cut(s)	291
Bsh1236I	CGCG	1 cut(s)	274
BshFI	GGCC	2 cut(s)	41, 234
BshNI	GGYRCC	2 cut(s)	194, 243
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	21
BsnI	GGCC	2 cut(s)	41, 234
BsoBI	CYCGRG	1 cut(s)	107
Bsp143I	GATC	3 cut(s)	3, 46, 171
BspACI	CCGC	1 cut(s)	102
BspANI	GGCC	2 cut(s)	41, 234
BspFNI	CGCG	1 cut(s)	274
BspLI	GGNNCC	5 cut(s)	19, 25, 196, 210, 245
BspPI	GGATC	1 cut(s)	54
BspT107I	GGYRCC	2 cut(s)	194, 243
BsrBI	CCGCTC	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	75
BssECI	CCNNGG	2 cut(s)	13, 42
BssMI	GATC	3 cut(s)	3, 46, 171
Bst4CI	ACNGT	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	137
BstDSI	CCRYGG	1 cut(s)	42
BstFNI	CGCG	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	3 cut(s)	6, 49, 174
BstMBI	GATC	3 cut(s)	3, 46, 171
BstUI	CGCG	1 cut(s)	274
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	41, 234
BtgI	CCRYGG	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	59
CfoI	GCGC	1 cut(s)	274
Cfr13I	GGNCC	2 cut(s)	208, 232
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	1 cut(s)	305
CviJI	RGCY	4 cut(s)	18, 41, 61, 234
CviKI_1	RGCY	4 cut(s)	18, 41, 61, 234
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	3 cut(s)	5, 48, 173
DpnII	GATC	3 cut(s)	3, 46, 171
DraI	TTTAAA	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	208
Eco88I	CYCGRG	1 cut(s)	107
EcoRI	GAATTC	1 cut(s)	141
FaeI	CATG	1 cut(s)	308
FaiI	YATR	1 cut(s)	306
FatI	CATG	1 cut(s)	304
GlaI	GCGC	1 cut(s)	273
GsaI	CCCAGC	1 cut(s)	295
HaeIII	GGCC	2 cut(s)	41, 234
HapII	CCGG	1 cut(s)	21
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	1 cut(s)	308
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	2 cut(s)	96, 312
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	2 cut(s)	91, 110
Hpy166II	GTNNAC	3 cut(s)	82, 130, 208
Hpy188I	TCNGA	1 cut(s)	95
Hpy188III	TCNNGA	3 cut(s)	107, 250, 299
Hpy8I	GTNNAC	3 cut(s)	82, 130, 208
Hpy99I	CGWCG	2 cut(s)	194, 203
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	1 cut(s)	67
HpyF3I	CTNAG	1 cut(s)	137
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	308
HspAI	GCGC	1 cut(s)	272
KpnI	GGTACC	1 cut(s)	247
Kzo9I	GATC	3 cut(s)	3, 46, 171
LmnI	GCTCC	2 cut(s)	23, 109
LpnPI	CCDG	5 cut(s)	23, 34, 56, 182, 277
LweI	GCATC	1 cut(s)	60
MaeII	ACGT	1 cut(s)	222
MalI	GATC	3 cut(s)	5, 48, 173
MbiI	CCGCTC	1 cut(s)	104
MboI	GATC	3 cut(s)	3, 46, 171
MboII	GAAGA	1 cut(s)	166
MflI	RGATCY	1 cut(s)	171
MluCI	AATT	2 cut(s)	141, 283
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	6 cut(s)	23, 167, 196, 227, 257, 261
MseI	TTAA	1 cut(s)	33
MspI	CCGG	1 cut(s)	21
MvnI	CGCG	1 cut(s)	274
NdeII	GATC	3 cut(s)	3, 46, 171
NlaIII	CATG	1 cut(s)	308
NlaIV	GGNNCC	5 cut(s)	19, 25, 196, 210, 245
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 198
PfeI	GAWTC	2 cut(s)	96, 312
PspFI	CCCAGC	1 cut(s)	291
PspN4I	GGNNCC	5 cut(s)	19, 25, 196, 210, 245
PspPI	GGNCC	2 cut(s)	208, 232
PsuI	RGATCY	1 cut(s)	171
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	33
Sau3AI	GATC	3 cut(s)	3, 46, 171
Sau96I	GGNCC	2 cut(s)	208, 232
SetI	ASST	7 cut(s)	32, 63, 159, 207, 219, 225, 249
SfaNI	GCATC	1 cut(s)	60
SinI	GGWCC	1 cut(s)	208
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
Sse9I	AATT	2 cut(s)	141, 283
SsiI	CCGC	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	2 cut(s)	159, 189
TasI	AATT	2 cut(s)	141, 283
TfiI	GAWTC	2 cut(s)	96, 312
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TspDTI	ATGAA	1 cut(s)	321
VpaK11BI	GGWCC	1 cut(s)	208
XapI	RAATTY	2 cut(s)	141, 283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.