Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001715

Physical Location & Seq

Genomic Coordinates Reverse (-)

22248672 .. 22254828

Gene Structure 6157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g31350.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGACAAAAGATGAAAGGGGACAACTAATGGAGGAAAAGAAGCTGAAGAAGCTACAAGAGAAGATGCAAAGAGAAGCTCTGAAAGCTAAAGCAGCTGATATGAAAAAGATAGAGAAAGAAATGCAAAGGTGGGAAAAAGGGAAGGTTGCCTTAAAATCGATTGTGGCTGAGATTGATTGTAAAGTTGTGGAACTGGGTTCAGTAGGAGGAAATTTGCTTACAAGGTTTGCTGAAAGAGGGATACCATATCGTATAAAAGCAAATCCGATCGAAAGATCAATTGTCTGGACCATGAAAGTTCCAGAACAATTTTCACAGCTTTATCCTAAAGGAATAGAGATCCAGTATATATTGCTTGTGTATGAGGCTGAAGAATTTTGTAACCTTGTCATCAAGGATTCTCTTCTGGAACATATTGCCAGGGTTCGAAGGATTTATCCGTCTTGTACAGTTTGTTATCTCACCAATAGGTCCATGGCAATGTATATTAATAATAGGGAACAAGAAGCGTACAAGAACCAAATGAATATTGGACGGCCATACCCAACTGTCAAGGAGATTGAACTGGTTCTTGCGCAGTTTACCACTAAGTTTTTCAAATTACATTCCCGGCAGTGCAGAGATGAGGTTGAACTTGCTGAACATGTTGTTGGTTTGACATGCAGCCTGTCAATCTGCATATTTAGAAAAAAGTTAACTAGACTGGATGTATATGCTACTGGAGCCAGTACAAGGAAGGACCATGTTGACCGTGATTTATTAAATAACAACTTATGGTTAAGAGCTTTGGTAGCTATTCCGAAGGTACAACCTCGGTCTGCAGAAGCTATATGCAAGAAGTTCCCTACCATGAAATCTCTTTTGAGTGTTTACATGGACCCGAGACTATCAGTAAGTATAATATATGCCTATTTCTCTGCGGCTGGTTTTGACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0006139 GO:0006259 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016787 GO:0016788 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

ERCC4

Protein Analysis

313

Amino Acids

36.12

Weight (kDa)

9.42

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ERCC4	PF02732	63 - 217	1.9e-12	ERCC4 domain
EME1-MUS81_C	PF21292	258 - 329	4.9e-09	EME1/MUS81, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21800 AT2G21800 AT2G21800 AT2G22140 AT2G22140
fragaria_vesca	FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_5g31350 FvH4_5g31350
malus_domestica	MD15G1335700.v1.1 MD15G1404100.v1.1
prunus_persica	Prupe.1G550600_v2.0.a1 Prupe.1G550600_v2.0.a1 Prupe.1G550600_v2.0.a1 Prupe.6G166800_v2.0.a1
pyrus_communis	pycom15g28970
rosa_chinensis	RchiOBHm_Chr2g0117911 RchiOBHm_Chr7g0226601 RchiOBHm_Chr7g0226611 RchiOBHm_Chr7g0228631
rosa_laevigata	RLG00000001714 RLG00000018383
rosa_multiflora	Rmu_sc0001423.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126110 Rroxscaffold_3G00230990 Rroxscaffold_3G00232670
rosa_rugosa	Rorug02G0214800 Rorug02G0214900 Rorug02G0214900 Rorug07G0238500 Rorug07G0238600
rosa_samantha	Rh2AG271200 Rh2BG282800 Rh2DG279100 Rh2DG297000 Rh7AG386100 Rh7AG403200 Rh7BG372700 Rh7BG372800 Rh7CG405400 Rh7CG422500 Rh7DG384700
rosa_wichuraiana	Rw2G021450 Rw7G032410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	576
AciI	CCGC	1 cut(s)	920
AclWI	GGATC	1 cut(s)	334
AcoI	YGGCCR	1 cut(s)	536
AcsI	RAATTY	2 cut(s)	211, 374
AcuI	CTGAAG	2 cut(s)	65, 390
AfaI	GTAC	4 cut(s)	448, 512, 730, 807
AfiI	CCNNNNNNNGG	1 cut(s)	732
AflIII	ACRYGT	1 cut(s)	643
AgsI	TTSAA	3 cut(s)	563, 598, 632
AjnI	CCWGG	1 cut(s)	419
AjuI	GAANNNNNNNTTGG	2 cut(s)	633, 665
AluBI	AGCT	9 cut(s)	43, 52, 77, 86, 95, 319, 785, 794, 827
AluI	AGCT	9 cut(s)	43, 52, 77, 86, 95, 319, 785, 794, 827
Alw26I	GTCTC	1 cut(s)	877
AlwI	GGATC	1 cut(s)	334
Ama87I	CYCGRG	1 cut(s)	880
AoxI	GGCC	1 cut(s)	536
ApeKI	GCWGC	2 cut(s)	92, 663
ApoI	RAATTY	2 cut(s)	211, 374
AseI	ATTAAT	1 cut(s)	489
Asp700I	GAANNNNTTC	1 cut(s)	567
AspLEI	GCGC	1 cut(s)	577
AspS9I	GGNCC	4 cut(s)	288, 471, 739, 877
AsuC2I	CCSGG	1 cut(s)	610
AsuHPI	GGTGA	1 cut(s)	454
AsuII	TTCGAA	1 cut(s)	427
AvaI	CYCGRG	1 cut(s)	880
AvaII	GGWCC	4 cut(s)	288, 471, 739, 877
BbvI	GCAGC	2 cut(s)	104, 675
BceAI	ACGGC	1 cut(s)	551
BciT130I	CCWGG	1 cut(s)	421
BciVI	GTATCC	1 cut(s)	234
BcnI	CCSGG	1 cut(s)	610
BcoDI	GTCTC	1 cut(s)	877
BfaI	CTAG	1 cut(s)	699
BfmI	CTRYAG	1 cut(s)	819
BfuI	GTATCC	1 cut(s)	234
BisI	GCNGC	3 cut(s)	93, 664, 921
BlsI	GCNGC	3 cut(s)	94, 665, 922
Bme1390I	CCNGG	2 cut(s)	421, 610
Bme18I	GGWCC	4 cut(s)	288, 471, 739, 877
BmeT110I	CYCGRG	1 cut(s)	880
BmgT120I	GGNCC	4 cut(s)	288, 471, 739, 877
BmiI	GGNNCC	2 cut(s)	724, 879
BmrFI	CCNGG	2 cut(s)	421, 610
BmrI	ACTGGG	1 cut(s)	203
BmsI	GCATC	1 cut(s)	54
BmuI	ACTGGG	1 cut(s)	203
BpmI	CTGGAG	1 cut(s)	741
Bpu14I	TTCGAA	1 cut(s)	427
BpuMI	CCSGG	1 cut(s)	610
Bsa29I	ATCGAT	1 cut(s)	158
BsaJI	CCNNGG	3 cut(s)	420, 474, 812
Bsc4I	CCNNNNNNNGG	1 cut(s)	732
Bse1I	ACTGG	6 cut(s)	198, 343, 570, 708, 724, 726
Bse3DI	GCAATG	1 cut(s)	486
BseBI	CCWGG	1 cut(s)	421
BseCI	ATCGAT	1 cut(s)	158
BseDI	CCNNGG	3 cut(s)	420, 474, 812
BseGI	GGATG	1 cut(s)	712
BseLI	CCNNNNNNNGG	1 cut(s)	732
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	6 cut(s)	198, 343, 570, 708, 724, 726
BseXI	GCAGC	2 cut(s)	104, 675
BsgI	GTGCAG	1 cut(s)	637
Bsh1285I	CGRYCG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	538
BshVI	ATCGAT	1 cut(s)	158
BsiEI	CGRYCG	1 cut(s)	270
BsiHKCI	CYCGRG	1 cut(s)	880
BsiSI	CCGG	1 cut(s)	610
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	732
BsmAI	GTCTC	1 cut(s)	877
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	1 cut(s)	538
BsoBI	CYCGRG	1 cut(s)	880
Bsp119I	TTCGAA	1 cut(s)	427
Bsp1407I	TGTACA	1 cut(s)	446
Bsp143I	GATC	3 cut(s)	267, 275, 339
Bsp19I	CCATGG	1 cut(s)	474
BspACI	CCGC	1 cut(s)	920
BspANI	GGCC	1 cut(s)	538
BspCNI	CTCAG	1 cut(s)	160
BspDI	ATCGAT	1 cut(s)	158
BspLI	GGNNCC	2 cut(s)	724, 879
BspMAI	CTGCAG	1 cut(s)	823
BspPI	GGATC	1 cut(s)	334
BspT104I	TTCGAA	1 cut(s)	427
BsrDI	GCAATG	1 cut(s)	486
BsrGI	TGTACA	1 cut(s)	446
BsrI	ACTGG	6 cut(s)	198, 343, 570, 708, 724, 726
BssECI	CCNNGG	3 cut(s)	420, 474, 812
BssMI	GATC	3 cut(s)	267, 275, 339
BssT1I	CCWWGG	1 cut(s)	474
Bst2UI	CCWGG	1 cut(s)	421
Bst4CI	ACNGT	3 cut(s)	451, 550, 752
Bst6I	CTCTTC	1 cut(s)	408
BstAUI	TGTACA	1 cut(s)	446
BstBI	TTCGAA	1 cut(s)	427
BstDEI	CTNAG	2 cut(s)	168, 588
BstDSI	CCRYGG	1 cut(s)	474
BstF5I	GGATG	1 cut(s)	712
BstHHI	GCGC	1 cut(s)	577
BstKTI	GATC	3 cut(s)	270, 278, 342
BstMAI	GTCTC	1 cut(s)	877
BstMBI	GATC	3 cut(s)	267, 275, 339
BstMCI	CGRYCG	1 cut(s)	270
BstMWI	GCNNNNNNNGC	5 cut(s)	49, 83, 92, 722, 791
BstNI	CCWGG	1 cut(s)	421
BstNSI	RCATGY	2 cut(s)	647, 663
BstSCI	CCNGG	2 cut(s)	419, 608
BstSFI	CTRYAG	1 cut(s)	819
BstV1I	GCAGC	2 cut(s)	104, 675
BstX2I	RGATCY	1 cut(s)	339
BstYI	RGATCY	1 cut(s)	339
Bsu15I	ATCGAT	1 cut(s)	158
BsuI	GTATCC	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	538
BsuTUI	ATCGAT	1 cut(s)	158
BtgI	CCRYGG	1 cut(s)	474
BtsCI	GGATG	1 cut(s)	712
BtsI	GCAGTG	1 cut(s)	620
BtsIMutI	CAGTG	1 cut(s)	620
CfoI	GCGC	1 cut(s)	577
Cfr13I	GGNCC	4 cut(s)	288, 471, 739, 877
ClaI	ATCGAT	1 cut(s)	158
Csp6I	GTAC	4 cut(s)	447, 511, 729, 806
CviAII	CATG	7 cut(s)	292, 475, 644, 660, 743, 850, 874
CviQI	GTAC	4 cut(s)	447, 511, 729, 806
DdeI	CTNAG	2 cut(s)	168, 588
DpnI	GATC	3 cut(s)	269, 277, 341
DpnII	GATC	3 cut(s)	267, 275, 339
EaeI	YGGCCR	1 cut(s)	536
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Eco130I	CCWWGG	1 cut(s)	474
Eco47I	GGWCC	4 cut(s)	288, 471, 739, 877
Eco57I	CTGAAG	2 cut(s)	65, 390
Eco88I	CYCGRG	1 cut(s)	880
EcoRII	CCWGG	1 cut(s)	419
EcoT14I	CCWWGG	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	474
FaeI	CATG	7 cut(s)	295, 478, 647, 663, 746, 853, 877
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	7 cut(s)	291, 474, 643, 659, 742, 849, 873
Fnu4HI	GCNGC	3 cut(s)	93, 664, 921
FokI	GGATG	1 cut(s)	719
Fsp4HI	GCNGC	3 cut(s)	93, 664, 921
FspBI	CTAG	1 cut(s)	699
FspI	TGCGCA	1 cut(s)	576
GlaI	GCGC	1 cut(s)	576
GluI	GCNGC	3 cut(s)	93, 664, 921
GsuI	CTGGAG	1 cut(s)	741
HaeIII	GGCC	1 cut(s)	538
HapII	CCGG	1 cut(s)	610
HhaI	GCGC	1 cut(s)	577
Hin1II	CATG	7 cut(s)	295, 478, 647, 663, 746, 853, 877
Hin6I	GCGC	1 cut(s)	575
HinP1I	GCGC	1 cut(s)	575
HincII	GTYRAC	2 cut(s)	696, 748
HindII	GTYRAC	2 cut(s)	696, 748
HinfI	GANTC	1 cut(s)	398
HpaI	GTTAAC	1 cut(s)	696
HpaII	CCGG	1 cut(s)	610
HphI	GGTGA	1 cut(s)	454
Hpy166II	GTNNAC	4 cut(s)	582, 696, 748, 871
Hpy188I	TCNGA	3 cut(s)	81, 267, 801
Hpy188III	TCNNGA	3 cut(s)	286, 302, 407
Hpy8I	GTNNAC	4 cut(s)	582, 696, 748, 871
HpyAV	CCTTC	4 cut(s)	136, 423, 730, 796
HpyCH4III	ACNGT	3 cut(s)	451, 550, 752
HpyCH4V	TGCA	7 cut(s)	67, 124, 618, 663, 678, 821, 834
HpyF10VI	GCNNNNNNNGC	5 cut(s)	49, 83, 92, 722, 791
HpyF3I	CTNAG	2 cut(s)	168, 588
Hsp92II	CATG	7 cut(s)	295, 478, 647, 663, 746, 853, 877
HspAI	GCGC	1 cut(s)	575
KspAI	GTTAAC	1 cut(s)	696
Kzo9I	GATC	3 cut(s)	267, 275, 339
LmnI	GCTCC	1 cut(s)	722
Lsp1109I	GCAGC	2 cut(s)	104, 675
LweI	GCATC	1 cut(s)	54
MaeI	CTAG	1 cut(s)	699
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	3 cut(s)	269, 277, 341
MboI	GATC	3 cut(s)	267, 275, 339
MboII	GAAGA	4 cut(s)	58, 73, 383, 395
MfeI	CAATTG	1 cut(s)	279
MflI	RGATCY	1 cut(s)	339
MluCI	AATT	5 cut(s)	211, 279, 308, 374, 599
MnlI	CCTC	6 cut(s)	25, 200, 230, 358, 619, 822
MroXI	GAANNNNTTC	1 cut(s)	567
MseI	TTAA	5 cut(s)	152, 489, 695, 761, 779
MslI	CAYNNNNRTG	1 cut(s)	479
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	1 cut(s)	610
MspR9I	CCNGG	2 cut(s)	421, 610
MunI	CAATTG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	421
MwoI	GCNNNNNNNGC	5 cut(s)	49, 83, 92, 722, 791
NciI	CCSGG	1 cut(s)	610
NcoI	CCATGG	1 cut(s)	474
NdeII	GATC	3 cut(s)	267, 275, 339
NlaIII	CATG	7 cut(s)	295, 478, 647, 663, 746, 853, 877
NlaIV	GGNNCC	2 cut(s)	724, 879
NsbI	TGCGCA	1 cut(s)	576
NspI	RCATGY	2 cut(s)	647, 663
NspV	TTCGAA	1 cut(s)	427
PciI	ACATGT	1 cut(s)	643
PdmI	GAANNNNTTC	1 cut(s)	567
PfeI	GAWTC	1 cut(s)	398
PkrI	GCNGC	3 cut(s)	94, 665, 922
Ple19I	CGATCG	1 cut(s)	270
PscI	ACATGT	1 cut(s)	643
PshBI	ATTAAT	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	419
PspN4I	GGNNCC	2 cut(s)	724, 879
PspPI	GGNCC	4 cut(s)	288, 471, 739, 877
PstI	CTGCAG	1 cut(s)	823
PsuI	RGATCY	1 cut(s)	339
PvuI	CGATCG	1 cut(s)	270
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	4 cut(s)	448, 512, 730, 807
RsaNI	GTAC	4 cut(s)	447, 511, 729, 806
RseI	CAYNNNNRTG	1 cut(s)	479
SaqAI	TTAA	5 cut(s)	152, 489, 695, 761, 779
SatI	GCNGC	3 cut(s)	93, 664, 921
Sau3AI	GATC	3 cut(s)	267, 275, 339
Sau96I	GGNCC	4 cut(s)	288, 471, 739, 877
ScrFI	CCNGG	2 cut(s)	421, 610
SfaNI	GCATC	1 cut(s)	54
SfcI	CTRYAG	1 cut(s)	819
SfuI	TTCGAA	1 cut(s)	427
SinI	GGWCC	4 cut(s)	288, 471, 739, 877
SmiMI	CAYNNNNRTG	1 cut(s)	479
Sse9I	AATT	5 cut(s)	211, 279, 308, 374, 599
SsiI	CCGC	1 cut(s)	920
SspI	AATATT	1 cut(s)	529
SspMI	CTAG	1 cut(s)	699
StyD4I	CCNGG	2 cut(s)	419, 608
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	3 cut(s)	451, 550, 752
TaqI	TCGA	3 cut(s)	158, 270, 427
TaqII	GACCGA	1 cut(s)	804
TasI	AATT	5 cut(s)	211, 279, 308, 374, 599
TatI	WGTACW	2 cut(s)	446, 728
TauI	GCSGC	1 cut(s)	923
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	5 cut(s)	152, 489, 695, 761, 779
Tru9I	TTAA	5 cut(s)	152, 489, 695, 761, 779
TscAI	CASTG	1 cut(s)	620
TseI	GCWGC	2 cut(s)	92, 663
TspDTI	ATGAA	5 cut(s)	27, 116, 308, 539, 866
TspGWI	ACGGA	1 cut(s)	429
TspRI	CASTG	1 cut(s)	620
VpaK11BI	GGWCC	4 cut(s)	288, 471, 739, 877
VspI	ATTAAT	1 cut(s)	489
XapI	RAATTY	2 cut(s)	211, 374
XceI	RCATGY	2 cut(s)	647, 663
XcmI	CCANNNNNNNNNTGG	2 cut(s)	472, 527
XmnI	GAANNNNTTC	1 cut(s)	567
XspI	CTAG	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.