RchiOBHm_Chr7g0226611

Crossover junction endonuclease

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
49843931 .. 49850769
6839 bp
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UTR
Exon/CDS
Intron
PRQ20296

Sequence Viewer

Length: 1557 bp
ATGTCGGAGCCAATCATCCTCTCCGACGAAGAAGACCACATTCCGCCCTCAATCCTCGTCCACTCCGTCAAGAAACGCCGAACCGGACCCGGCCCAAACCCAAACCCTACTGTTCTAATCCTCGACGACGATGACCTCACCCCACACCAGTCCACCGCCTCCACCTCCACGCCCTACTTTGAATCGCCGAGCTCCGACATCGAAGTTGTGAAATGCACCAGAGCCCCGTCCGGAGACCTAACTAGGGTTCATGGTTCAGGCCACAAGTCCTCTGGAATTGATGGGTTGATATGTTTGGAATCTGATGACGATGACTCTGAAAGCGGTTCTGGAGGGAAAAAGGAGAAGGAGAATGAATCCATCACTAGCAGTTTCGGCATGGTGGAGGACTTGGATTTGAGTTATAGAGATGTTACCATGACATGTTCTCTTGGACATGCTGATGTAGCAGATATTACGGAAGAGGAAACAAAAGAAGCAAAGAGAAGAAAAAAGATGACAAAAGATGAAAGGGCACAACTAATGGAAGAAAAGAAGCTGAAGAAGCTACAAGAGAAGATGCAAAGAGAAGCTTTGAAAGCTGAAGCAGCAGATATGAAAAGGATACAGAAAGAAAAGCAAAGGTGGGAGAAAGGGAAATTTGCCTTAAAATCGATTGTGGCTGAGATTGATTGTAAAGTTGTGGAACTGGGGTCATTAGGAGGAAATTTGCTTACAAGGTTTGCTGAAAGAGGGCTATCATACCGTATAAAAGCAAATCCAATTGAAAGATCAATTGTCTGGACCATGACAGTTCCAGAACACTTTTCACAGCTTTTTCCTGAAGGAATAGAGATCCATTATATATTGCTTGTGTATGAGGCAGAAGAATTTTGTAACCTTGTCATCAAGGATTCTCTTCTGGAACATATTGCCAGGGTTCGAAGTATTTATCCGTCTTATACAGTTTGTTATCTCATGAATAGGTCTATGGCGATGTATATTAATAATAGGGAACAAGAAGCGTACAAGAACCAAACAAATATTGGACGGACATACCCAACTGCCAAGGAGGTTGAACTGGAGTTTGCAAAGTTTACCACCAATTTTTTCAAAGTACATTCCAGGCAGTGCAGAGATGAGGTTGAACTTGCTGAACATGTTGTTGGTTTGACATGCAGCCTGTCAACCTGCAAATTTAGAAAGAAGTTAACTAGACTGGATGTAAATGCTAATGGAGCCCTTATCACGAAGGACCGCATTGACCGCGATTTATTAAAGAACAACTTATGGTTAAGAGCTTTGGTAGCTATTCCGAAGGTACAACCGCGATTTGCAAAGGCTATATGGAAGAAGTACCCTACCATGAAATCTCTTTTGAGTGTTTACATGGACCCGATAATATCAGTTCATGAAAAGGAATTTCTGCTCAAGGATTTGACAACAGAAGGCTTACTAGGTGGTGACAGAAAAGTAGGTGAGGTTTGTTCTAAGAGAGTTTATAGGGTTCTTATGGCACAACATGGATGCGTCACAACTGATGATATTGAGGATGGTGCTAATTTCTTCGGGAGCTGA

Protein Analysis

518

Amino Acids

58.64

Weight (kDa)

6.4

Isoelectric Point (pI)

41.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERCC4 PF02732 231 - 382 2.6e-10 ERCC4 domain
EME1-MUS81_C PF21292 423 - 494 1.2e-09 EME1/MUS81, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1178
AccII CGCG 2 cut(s) 1248, 1309
AccIII TCCGGA 1 cut(s) 230
AciI CCGC 6 cut(s) 44, 156, 324, 1237, 1246, 1307
AclWI GGATC 1 cut(s) 829
AcsI RAATTY 5 cut(s) 638, 706, 869, 1175, 1400
AcuI CTGAAG 3 cut(s) 560, 603, 843
AfaI GTAC 4 cut(s) 1007, 1098, 1302, 1337
AfiI CCNNNNNNNGG 1 cut(s) 244
AflIII ACRYGT 2 cut(s) 422, 1138
AgsI TTSAA 6 cut(s) 182, 577, 767, 1058, 1093, 1127
AjnI CCWGG 2 cut(s) 914, 1103
AjuI GAANNNNNNNTTGG 2 cut(s) 1128, 1160
AluBI AGCT 9 cut(s) 192, 538, 547, 572, 581, 814, 1280, 1289, 1554
AluI AGCT 9 cut(s) 192, 538, 547, 572, 581, 814, 1280, 1289, 1554
Alw21I GWGCWC 1 cut(s) 194
Alw26I GTCTC 1 cut(s) 228
AlwI GGATC 1 cut(s) 829
Aor13HI TCCGGA 1 cut(s) 230
AoxI GGCC 2 cut(s) 91, 259
ApeKI GCWGC 2 cut(s) 587, 1158
ApoI RAATTY 5 cut(s) 638, 706, 869, 1175, 1400
AseI ATTAAT 1 cut(s) 984
AspS9I GGNCC 5 cut(s) 86, 92, 783, 1234, 1372
AsuC2I CCSGG 1 cut(s) 90
AsuHPI GGTGA 3 cut(s) 130, 1454, 1469
AsuII TTCGAA 1 cut(s) 922
AvaII GGWCC 4 cut(s) 86, 783, 1234, 1372
BaeGI GKGCMC 1 cut(s) 517
BanII GRGCYC 3 cut(s) 194, 226, 1222
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 194
BbvI GCAGC 2 cut(s) 599, 1170
BccI CCATC 3 cut(s) 275, 368, 1526
BciT130I CCWGG 2 cut(s) 916, 1105
BciVI GTATCC 1 cut(s) 597
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 228
BfaI CTAG 4 cut(s) 243, 366, 1194, 1436
BfuAI ACCTGC 1 cut(s) 1178
BfuI GTATCC 1 cut(s) 597
BisI GCNGC 2 cut(s) 588, 1159
BlsI GCNGC 2 cut(s) 589, 1160
Bme1390I CCNGG 3 cut(s) 90, 916, 1105
Bme18I GGWCC 4 cut(s) 86, 783, 1234, 1372
BmgT120I GGNCC 5 cut(s) 86, 92, 783, 1234, 1372
BmiI GGNNCC 4 cut(s) 9, 88, 1219, 1374
BmrFI CCNGG 3 cut(s) 90, 916, 1105
BmrI ACTGGG 1 cut(s) 698
BmsI GCATC 2 cut(s) 549, 1496
BmuI ACTGGG 1 cut(s) 698
BpiI GAAGAC 1 cut(s) 39
BpmI CTGGAG 2 cut(s) 351, 1082
Bpu14I TTCGAA 1 cut(s) 922
BpuEI CTTGAG 1 cut(s) 1394
BpuMI CCSGG 1 cut(s) 90
Bsa29I ATCGAT 1 cut(s) 653
BsaI GGTCTC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 915, 1047
BsaWI WCCGGW 2 cut(s) 83, 230
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse1I ACTGG 4 cut(s) 148, 693, 1065, 1203
BseAI TCCGGA 1 cut(s) 230
BseBI CCWGG 2 cut(s) 916, 1105
BseCI ATCGAT 1 cut(s) 653
BseDI CCNNGG 2 cut(s) 915, 1047
BseGI GGATG 4 cut(s) 15, 1207, 1511, 1537
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMII CTCAG 1 cut(s) 654
BseNI ACTGG 4 cut(s) 148, 693, 1065, 1203
BseSI GKGCMC 1 cut(s) 517
BseXI GCAGC 2 cut(s) 599, 1170
BsgI GTGCAG 1 cut(s) 1132
Bsh1236I CGCG 2 cut(s) 1248, 1309
BshFI GGCC 2 cut(s) 93, 261
BshVI ATCGAT 1 cut(s) 653
BsiHKAI GWGCWC 1 cut(s) 194
BsiSI CCGG 3 cut(s) 84, 90, 231
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 1 cut(s) 228
BsnI GGCC 2 cut(s) 93, 261
Bso31I GGTCTC 1 cut(s) 228
Bsp119I TTCGAA 1 cut(s) 922
Bsp1286I GDGCHC 4 cut(s) 194, 226, 517, 1222
Bsp13I TCCGGA 1 cut(s) 230
Bsp143I GATC 2 cut(s) 770, 834
BspACI CCGC 6 cut(s) 44, 156, 324, 1237, 1246, 1307
BspANI GGCC 2 cut(s) 93, 261
BspCNI CTCAG 1 cut(s) 655
BspDI ATCGAT 1 cut(s) 653
BspEI TCCGGA 1 cut(s) 230
BspFNI CGCG 2 cut(s) 1248, 1309
BspHI TCATGA 2 cut(s) 957, 1390
BspLI GGNNCC 4 cut(s) 9, 88, 1219, 1374
BspMI ACCTGC 1 cut(s) 1178
BspPI GGATC 1 cut(s) 829
BspT104I TTCGAA 1 cut(s) 922
BspTNI GGTCTC 1 cut(s) 228
BsrI ACTGG 4 cut(s) 148, 693, 1065, 1203
BssECI CCNNGG 2 cut(s) 915, 1047
BssMI GATC 2 cut(s) 770, 834
BssT1I CCWWGG 1 cut(s) 1047
Bst2UI CCWGG 2 cut(s) 916, 1105
Bst4CI ACNGT 4 cut(s) 112, 746, 793, 946
Bst6I CTCTTC 2 cut(s) 456, 903
BstBI TTCGAA 1 cut(s) 922
BstDEI CTNAG 2 cut(s) 663, 1470
BstF5I GGATG 4 cut(s) 15, 1207, 1511, 1537
BstFNI CGCG 2 cut(s) 1248, 1309
BstKTI GATC 2 cut(s) 773, 837
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 2 cut(s) 770, 834
BstMWI GCNNNNNNNGC 8 cut(s) 375, 446, 544, 578, 587, 1217, 1245, 1286
BstNI CCWGG 2 cut(s) 916, 1105
BstNSI RCATGY 4 cut(s) 426, 440, 1142, 1158
BstSCI CCNGG 3 cut(s) 88, 914, 1103
BstSLI GKGCMC 1 cut(s) 517
BstUI CGCG 2 cut(s) 1248, 1309
BstV1I GCAGC 2 cut(s) 599, 1170
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 834
BstYI RGATCY 1 cut(s) 834
Bsu15I ATCGAT 1 cut(s) 653
BsuI GTATCC 1 cut(s) 597
BsuRI GGCC 2 cut(s) 93, 261
BsuTUI ATCGAT 1 cut(s) 653
BtgZI GCGATG 1 cut(s) 989
BtsCI GGATG 4 cut(s) 15, 1207, 1511, 1537
BtsI GCAGTG 1 cut(s) 1115
BtsIMutI CAGTG 1 cut(s) 1115
BveI ACCTGC 1 cut(s) 1178
CciI TCATGA 2 cut(s) 957, 1390
Cfr13I GGNCC 5 cut(s) 86, 92, 783, 1234, 1372
ClaI ATCGAT 1 cut(s) 653
CseI GACGC 1 cut(s) 1498
Csp6I GTAC 4 cut(s) 1006, 1097, 1301, 1336
CviQI GTAC 4 cut(s) 1006, 1097, 1301, 1336
DdeI CTNAG 2 cut(s) 663, 1470
DpnI GATC 2 cut(s) 772, 836
DpnII GATC 2 cut(s) 770, 834
Eam1104I CTCTTC 2 cut(s) 456, 903
EarI CTCTTC 2 cut(s) 456, 903
EciI GGCGGA 1 cut(s) 33
Ecl136II GAGCTC 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 1047
Eco24I GRGCYC 3 cut(s) 194, 226, 1222
Eco31I GGTCTC 1 cut(s) 228
Eco47I GGWCC 4 cut(s) 86, 783, 1234, 1372
Eco53kI GAGCTC 1 cut(s) 192
Eco57I CTGAAG 3 cut(s) 560, 603, 843
EcoICRI GAGCTC 1 cut(s) 192
EcoRII CCWGG 2 cut(s) 914, 1103
EcoT14I CCWWGG 1 cut(s) 1047
EcoT38I GRGCYC 3 cut(s) 194, 226, 1222
ErhI CCWWGG 1 cut(s) 1047
FalI AAGNNNNNCTT 4 cut(s) 556, 588, 1250, 1282
Fnu4HI GCNGC 2 cut(s) 588, 1159
FokI GGATG 4 cut(s) 2, 1214, 1518, 1544
FriOI GRGCYC 3 cut(s) 194, 226, 1222
Fsp4HI GCNGC 2 cut(s) 588, 1159
FspBI CTAG 4 cut(s) 243, 366, 1194, 1436
GluI GCNGC 2 cut(s) 588, 1159
GsuI CTGGAG 2 cut(s) 351, 1082
HaeIII GGCC 2 cut(s) 93, 261
HapII CCGG 3 cut(s) 84, 90, 231
HgaI GACGC 1 cut(s) 1498
HincII GTYRAC 2 cut(s) 1167, 1191
HindII GTYRAC 2 cut(s) 1167, 1191
HindIII AAGCTT 1 cut(s) 570
HinfI GANTC 5 cut(s) 182, 299, 314, 356, 893
HpaI GTTAAC 1 cut(s) 1191
HpaII CCGG 3 cut(s) 84, 90, 231
HphI GGTGA 3 cut(s) 130, 1454, 1469
Hpy166II GTNNAC 6 cut(s) 61, 153, 1077, 1167, 1191, 1366
Hpy188I TCNGA 6 cut(s) 7, 25, 196, 304, 319, 1296
Hpy8I GTNNAC 6 cut(s) 61, 153, 1077, 1167, 1191, 1366
Hpy99I CGWCG 3 cut(s) 29, 128, 131
HpyAV CCTTC 5 cut(s) 340, 818, 1225, 1291, 1421
HpyCH4III ACNGT 4 cut(s) 112, 746, 793, 946
HpyCH4V TGCA 7 cut(s) 216, 562, 1070, 1113, 1158, 1173, 1316
HpyF10VI GCNNNNNNNGC 8 cut(s) 375, 446, 544, 578, 587, 1217, 1245, 1286
HpyF3I CTNAG 2 cut(s) 663, 1470
Kpn2I TCCGGA 1 cut(s) 230
KspAI GTTAAC 1 cut(s) 1191
Kzo9I GATC 2 cut(s) 770, 834
LmnI GCTCC 4 cut(s) 7, 197, 1217, 1551
Lsp1109I GCAGC 2 cut(s) 599, 1170
LweI GCATC 2 cut(s) 549, 1496
MaeI CTAG 4 cut(s) 243, 366, 1194, 1436
MaeIII GTNAC 4 cut(s) 412, 875, 1442, 1510
MalI GATC 2 cut(s) 772, 836
MboI GATC 2 cut(s) 770, 834
MfeI CAATTG 2 cut(s) 762, 774
MflI RGATCY 1 cut(s) 834
MhlI GDGCHC 4 cut(s) 194, 226, 517, 1222
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 2 cut(s) 48, 219
MroI TCCGGA 1 cut(s) 230
MseI TTAA 5 cut(s) 647, 984, 1190, 1256, 1274
MslI CAYNNNNRTG 1 cut(s) 441
MspI CCGG 3 cut(s) 84, 90, 231
MspR9I CCNGG 3 cut(s) 90, 916, 1105
MunI CAATTG 2 cut(s) 762, 774
MvaI CCWGG 2 cut(s) 916, 1105
MvnI CGCG 2 cut(s) 1248, 1309
MwoI GCNNNNNNNGC 8 cut(s) 375, 446, 544, 578, 587, 1217, 1245, 1286
NciI CCSGG 1 cut(s) 90
NdeII GATC 2 cut(s) 770, 834
NlaIV GGNNCC 4 cut(s) 9, 88, 1219, 1374
NmeAIII GCCGAG 1 cut(s) 213
NmuCI GTSAC 2 cut(s) 1442, 1510
NspI RCATGY 4 cut(s) 426, 440, 1142, 1158
NspV TTCGAA 1 cut(s) 922
PagI TCATGA 2 cut(s) 957, 1390
PciI ACATGT 2 cut(s) 422, 1138
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PfeI GAWTC 4 cut(s) 182, 299, 356, 893
PkrI GCNGC 2 cut(s) 589, 1160
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
PscI ACATGT 2 cut(s) 422, 1138
PshBI ATTAAT 1 cut(s) 984
Psp124BI GAGCTC 1 cut(s) 194
Psp6I CCWGG 2 cut(s) 914, 1103
PspGI CCWGG 2 cut(s) 914, 1103
PspN4I GGNNCC 4 cut(s) 9, 88, 1219, 1374
PspPI GGNCC 5 cut(s) 86, 92, 783, 1234, 1372
PsuI RGATCY 1 cut(s) 834
RsaI GTAC 4 cut(s) 1007, 1098, 1302, 1337
RsaNI GTAC 4 cut(s) 1006, 1097, 1301, 1336
RseI CAYNNNNRTG 1 cut(s) 441
SacI GAGCTC 1 cut(s) 194
SaqAI TTAA 5 cut(s) 647, 984, 1190, 1256, 1274
SatI GCNGC 2 cut(s) 588, 1159
Sau3AI GATC 2 cut(s) 770, 834
Sau96I GGNCC 5 cut(s) 86, 92, 783, 1234, 1372
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 3 cut(s) 90, 916, 1105
SduI GDGCHC 4 cut(s) 194, 226, 517, 1222
SfaNI GCATC 2 cut(s) 549, 1496
SfuI TTCGAA 1 cut(s) 922
SinI GGWCC 4 cut(s) 86, 783, 1234, 1372
SmiMI CAYNNNNRTG 1 cut(s) 441
SmlI CTYRAG 1 cut(s) 1409
SmoI CTYRAG 1 cut(s) 1409
SsiI CCGC 6 cut(s) 44, 156, 324, 1237, 1246, 1307
SspI AATATT 1 cut(s) 1024
SspMI CTAG 4 cut(s) 243, 366, 1194, 1436
SstI GAGCTC 1 cut(s) 194
StyD4I CCNGG 3 cut(s) 88, 914, 1103
StyI CCWWGG 1 cut(s) 1047
TaaI ACNGT 4 cut(s) 112, 746, 793, 946
TaqI TCGA 4 cut(s) 123, 201, 653, 922
TatI WGTACW 1 cut(s) 1096
TfiI GAWTC 4 cut(s) 182, 299, 356, 893
Tru1I TTAA 5 cut(s) 647, 984, 1190, 1256, 1274
Tru9I TTAA 5 cut(s) 647, 984, 1190, 1256, 1274
TscAI CASTG 1 cut(s) 1115
TseFI GTSAC 2 cut(s) 1442, 1510
TseI GCWGC 2 cut(s) 587, 1158
Tsp45I GTSAC 2 cut(s) 1442, 1510
TspDTI ATGAA 8 cut(s) 239, 369, 522, 611, 974, 1361, 1379, 1407
TspGWI ACGGA 4 cut(s) 55, 473, 924, 1045
TspRI CASTG 1 cut(s) 1115
VpaK11BI GGWCC 4 cut(s) 86, 783, 1234, 1372
VspI ATTAAT 1 cut(s) 984
XapI RAATTY 5 cut(s) 638, 706, 869, 1175, 1400
XceI RCATGY 4 cut(s) 426, 440, 1142, 1158
XcmI CCANNNNNNNNNTGG 2 cut(s) 269, 1022
XspI CTAG 4 cut(s) 243, 366, 1194, 1436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.