Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001715

Physical Location & Seq

Genomic Coordinates Reverse (-)

40052087 .. 40054829

Gene Structure 2743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG372700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCTAGGGTTTTCGTCCAGTCTACTAACATTCCTAGTGTGGTTGCCAGTCCAAAGCTTGGTCAATTTAAAGGATCTGAAAATTCTAGAAAGGCAACAAAGATGATGTGTACTTTACGAGCACCTGCATTGAGATTGAGCAGTTTCTCAGGACTCCGTAGTGTTAATGTTTTAGATATTATGGTGAAGCCTGGACAAGACTTATATGCTAAGGTGGGAGAAGCTATCTCCTCCCGGCATCGAAAGGCTAGCAGATGTGTGCCTAAAGCCACGTCGTTTGATCGCTTCTCAGAAAAGGCAATAAAAGCGATTCTGCTTGCACAAGAGGAAACAATGCGAATTGGTCACAACTTTGTTGGTACAGAGCACATACTTTTGGGTCTTGTTGGTGAAGGAACTGGGATTGCTGCCAAGGTCCTTAAATCTATTGGAATCAATCTTAGAGGTGCACGCGTTGAAGTGAAAAAGATCATTGGAACGGGTCGTGGCTTTGTTGCTATTGAAATCCCATTCACTTCTCGTGCAAAGCGAGTTTTGGAACTGTCACAGGAGGAAGCTCGACAACTGGGCCATAACTATATTGGACCTGAGCACTTGCTTTTGGGACTGCTTCGTGAAGGTGAGGGTGTGGCGGCCTGTGTTCTTAAAAATTTAGGTGCTGACCCCAGCAACATTCGCACACAGGTTATTCGTATGGTAGGTGAGAGCACAGAAGCTGCTGGTGTTGGAGCTAGACAGGGAACCAGTGGCAACAAAATGCCAACTCTAGAGGAGTATGGAACCAATTTGACCAAGTTAGCAGAGGAGGGCAAAGAAGATATTTTGACTTCATACGTAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko01100 map01100

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N UVR

Protein Analysis

280

Amino Acids

30.11

Weight (kDa)

9.75

Isoelectric Point (pI)

45.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clp_N	PF02861	95 - 206	9.5e-30	Clp repeat (R) N-terminal domain
Clp_N	PF02861	171 - 242	4e-18	Clp repeat (R) N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21800 AT2G21800 AT2G21800 AT2G22140 AT2G22140
fragaria_vesca	FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_5g31350 FvH4_5g31350
malus_domestica	MD15G1335700.v1.1 MD15G1404100.v1.1
prunus_persica	Prupe.1G550600_v2.0.a1 Prupe.1G550600_v2.0.a1 Prupe.1G550600_v2.0.a1 Prupe.6G166800_v2.0.a1
pyrus_communis	pycom15g28970
rosa_chinensis	RchiOBHm_Chr2g0117911 RchiOBHm_Chr7g0226601 RchiOBHm_Chr7g0226611 RchiOBHm_Chr7g0228631
rosa_laevigata	RLG00000001714 RLG00000018383
rosa_multiflora	Rmu_sc0001423.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126110 Rroxscaffold_3G00230990 Rroxscaffold_3G00232670
rosa_rugosa	Rorug02G0214800 Rorug02G0214900 Rorug02G0214900 Rorug07G0238500 Rorug07G0238600
rosa_samantha	Rh2AG271200 Rh2BG282800 Rh2DG279100 Rh2DG297000 Rh7AG386100 Rh7AG403200 Rh7BG372700 Rh7BG372800 Rh7CG405400 Rh7CG422500 Rh7DG384700
rosa_wichuraiana	Rw2G021450 Rw7G032410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	133
Acc36I	ACCTGC	1 cut(s)	133
AccB7I	CCANNNNNTGG	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	23
AccII	CGCG	1 cut(s)	453
AciI	CCGC	1 cut(s)	632
AclWI	GGATC	1 cut(s)	82
AcsI	RAATTY	2 cut(s)	82, 649
AfaI	GTAC	2 cut(s)	112, 361
AfiI	CCNNNNNNNGG	1 cut(s)	59
AflIII	ACRYGT	1 cut(s)	451
AgsI	TTSAA	2 cut(s)	458, 503
AjiI	CACGTC	1 cut(s)	273
AjnI	CCWGG	1 cut(s)	190
AluBI	AGCT	6 cut(s)	58, 224, 557, 716, 731, 839
AluI	AGCT	6 cut(s)	58, 224, 557, 716, 731, 839
Alw21I	GWGCWC	5 cut(s)	124, 369, 451, 594, 710
Alw44I	GTGCAC	1 cut(s)	447
AlwI	GGATC	1 cut(s)	82
AlwNI	CAGNNNCTG	1 cut(s)	716
AoxI	GGCC	2 cut(s)	568, 633
ApaLI	GTGCAC	1 cut(s)	447
ApeKI	GCWGC	2 cut(s)	407, 716
ApoI	RAATTY	2 cut(s)	82, 649
AspS9I	GGNCC	3 cut(s)	415, 568, 584
AsuC2I	CCSGG	1 cut(s)	235
AsuHPI	GGTGA	4 cut(s)	196, 401, 632, 713
AsuNHI	GCTAGC	1 cut(s)	248
AvaII	GGWCC	2 cut(s)	415, 584
BaeGI	GKGCMC	1 cut(s)	451
BauI	CACGAG	1 cut(s)	519
Bbv12I	GWGCWC	5 cut(s)	124, 369, 451, 594, 710
BbvI	GCAGC	2 cut(s)	394, 703
BciT130I	CCWGG	1 cut(s)	192
BcnI	CCSGG	1 cut(s)	235
BfaI	CTAG	6 cut(s)	6, 36, 87, 249, 732, 767
BfuAI	ACCTGC	1 cut(s)	133
BisI	GCNGC	3 cut(s)	408, 633, 717
BlsI	GCNGC	3 cut(s)	409, 634, 718
Bme1390I	CCNGG	2 cut(s)	192, 235
Bme18I	GGWCC	2 cut(s)	415, 584
BmgBI	CACGTC	1 cut(s)	273
BmgT120I	GGNCC	3 cut(s)	415, 568, 584
BmiI	GGNNCC	2 cut(s)	742, 781
BmrFI	CCNGG	2 cut(s)	192, 235
BmrI	ACTGGG	2 cut(s)	408, 575
BmsI	GCATC	1 cut(s)	247
BmtI	GCTAGC	1 cut(s)	252
BmuI	ACTGGG	2 cut(s)	408, 575
Bpu10I	CCTNAGC	2 cut(s)	210, 588
BpuMI	CCSGG	1 cut(s)	235
BsaAI	YACGTR	1 cut(s)	835
BsaJI	CCNNGG	1 cut(s)	411
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse1I	ACTGG	5 cut(s)	19, 48, 403, 570, 744
BseBI	CCWGG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	411
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	3 cut(s)	162, 303, 579
BseNI	ACTGG	5 cut(s)	19, 48, 403, 570, 744
BseRI	GAGGAG	3 cut(s)	220, 785, 818
BseSI	GKGCMC	1 cut(s)	451
BseXI	GCAGC	2 cut(s)	394, 703
BseYI	CCCAGC	1 cut(s)	665
Bsh1236I	CGCG	1 cut(s)	453
BshFI	GGCC	2 cut(s)	570, 635
BsiHKAI	GWGCWC	5 cut(s)	124, 369, 451, 594, 710
BsiSI	CCGG	1 cut(s)	235
BslFI	GGGAC	1 cut(s)	618
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	618
BsnI	GGCC	2 cut(s)	570, 635
Bsp1286I	GDGCHC	5 cut(s)	124, 369, 451, 594, 710
Bsp143I	GATC	3 cut(s)	74, 280, 468
BspACI	CCGC	1 cut(s)	632
BspANI	GGCC	2 cut(s)	570, 635
BspCNI	CTCAG	3 cut(s)	161, 302, 580
BspFNI	CGCG	1 cut(s)	453
BspLI	GGNNCC	2 cut(s)	742, 781
BspMI	ACCTGC	1 cut(s)	133
BspOI	GCTAGC	1 cut(s)	252
BspPI	GGATC	1 cut(s)	82
BsrI	ACTGG	5 cut(s)	19, 48, 403, 570, 744
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	3 cut(s)	74, 280, 468
BssSI	CACGAG	1 cut(s)	519
BssT1I	CCWWGG	1 cut(s)	411
Bst2BI	CACGAG	1 cut(s)	519
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	1 cut(s)	543
BstBAI	YACGTR	1 cut(s)	835
BstC8I	GCNNGC	3 cut(s)	250, 318, 451
BstDEI	CTNAG	5 cut(s)	148, 210, 289, 440, 588
BstFNI	CGCG	1 cut(s)	453
BstKTI	GATC	3 cut(s)	77, 283, 471
BstMBI	GATC	3 cut(s)	74, 280, 468
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 675
BstNI	CCWGG	1 cut(s)	192
BstSCI	CCNGG	2 cut(s)	190, 233
BstSLI	GKGCMC	1 cut(s)	451
BstSNI	TACGTA	1 cut(s)	835
BstUI	CGCG	1 cut(s)	453
BstV1I	GCAGC	2 cut(s)	394, 703
BstX2I	RGATCY	1 cut(s)	74
BstYI	RGATCY	1 cut(s)	74
BsuRI	GGCC	2 cut(s)	570, 635
BtrI	CACGTC	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	751
BveI	ACCTGC	1 cut(s)	133
Cac8I	GCNNGC	3 cut(s)	250, 318, 451
CaiI	CAGNNNCTG	1 cut(s)	716
Cfr13I	GGNCC	3 cut(s)	415, 568, 584
Csp6I	GTAC	2 cut(s)	111, 360
CspCI	CAANNNNNGTGG	2 cut(s)	259, 294
CviQI	GTAC	2 cut(s)	111, 360
DdeI	CTNAG	5 cut(s)	148, 210, 289, 440, 588
DpnI	GATC	3 cut(s)	76, 282, 470
DpnII	GATC	3 cut(s)	74, 280, 468
DraI	TTTAAA	1 cut(s)	70
Eco105I	TACGTA	1 cut(s)	835
Eco130I	CCWWGG	1 cut(s)	411
Eco47I	GGWCC	2 cut(s)	415, 584
EcoO109I	RGGNCCY	1 cut(s)	415
EcoRII	CCWGG	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	411
ErhI	CCWWGG	1 cut(s)	411
FaiI	YATR	9 cut(s)	182, 205, 207, 371, 573, 579, 695, 777, 832
FaqI	GGGAC	1 cut(s)	618
FblI	GTMKAC	1 cut(s)	23
Fnu4HI	GCNGC	3 cut(s)	408, 633, 717
Fsp4HI	GCNGC	3 cut(s)	408, 633, 717
FspBI	CTAG	6 cut(s)	6, 36, 87, 249, 732, 767
GluI	GCNGC	3 cut(s)	408, 633, 717
GsaI	CCCAGC	1 cut(s)	669
HaeIII	GGCC	2 cut(s)	570, 635
HapII	CCGG	1 cut(s)	235
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	3 cut(s)	153, 310, 432
HpaII	CCGG	1 cut(s)	235
HphI	GGTGA	4 cut(s)	196, 401, 632, 713
Hpy166II	GTNNAC	3 cut(s)	24, 111, 449
Hpy188I	TCNGA	2 cut(s)	79, 292
Hpy188III	TCNNGA	4 cut(s)	87, 150, 614, 767
Hpy8I	GTNNAC	3 cut(s)	24, 111, 449
Hpy99I	CGWCG	1 cut(s)	277
HpyAV	CCTTC	2 cut(s)	386, 611
HpyCH4III	ACNGT	1 cut(s)	543
HpyCH4IV	ACGT	2 cut(s)	272, 834
HpyCH4V	TGCA	4 cut(s)	128, 320, 449, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 675
HpyF3I	CTNAG	5 cut(s)	148, 210, 289, 440, 588
HpySE526I	ACGT	2 cut(s)	272, 834
Kzo9I	GATC	3 cut(s)	74, 280, 468
LmnI	GCTCC	1 cut(s)	728
Lsp1109I	GCAGC	2 cut(s)	394, 703
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	6 cut(s)	6, 36, 87, 249, 732, 767
MaeII	ACGT	2 cut(s)	272, 834
MaeIII	GTNAC	2 cut(s)	344, 543
MalI	GATC	3 cut(s)	76, 282, 470
MboI	GATC	3 cut(s)	74, 280, 468
MboII	GAAGA	1 cut(s)	827
MflI	RGATCY	1 cut(s)	74
MhlI	GDGCHC	5 cut(s)	124, 369, 451, 594, 710
MluCI	AATT	5 cut(s)	65, 82, 339, 649, 784
MluI	ACGCGT	1 cut(s)	451
MlyI	GAGTC	1 cut(s)	147
MmeI	TCCRAC	1 cut(s)	706
MnlI	CCTC	8 cut(s)	241, 319, 437, 544, 616, 763, 796, 799
MseI	TTAA	5 cut(s)	69, 165, 420, 645, 841
MspI	CCGG	1 cut(s)	235
MspR9I	CCNGG	2 cut(s)	192, 235
MvaI	CCWGG	1 cut(s)	192
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	2 cut(s)	305, 675
NciI	CCSGG	1 cut(s)	235
NdeII	GATC	3 cut(s)	74, 280, 468
NheI	GCTAGC	1 cut(s)	248
NlaIV	GGNNCC	2 cut(s)	742, 781
NmuCI	GTSAC	2 cut(s)	344, 543
PaqCI	CACCTGC	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	526
PfeI	GAWTC	2 cut(s)	310, 432
PflMI	CCANNNNNTGG	1 cut(s)	59
PkrI	GCNGC	3 cut(s)	409, 634, 718
PleI	GAGTC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	147
Ppu21I	YACGTR	1 cut(s)	835
PpuMI	RGGWCCY	1 cut(s)	415
Psp5II	RGGWCCY	1 cut(s)	415
Psp6I	CCWGG	1 cut(s)	190
PspFI	CCCAGC	1 cut(s)	665
PspGI	CCWGG	1 cut(s)	190
PspN4I	GGNNCC	2 cut(s)	742, 781
PspPI	GGNCC	3 cut(s)	415, 568, 584
PspPPI	RGGWCCY	1 cut(s)	415
PstNI	CAGNNNCTG	1 cut(s)	716
PsuI	RGATCY	1 cut(s)	74
RsaI	GTAC	2 cut(s)	112, 361
RsaNI	GTAC	2 cut(s)	111, 360
SaqAI	TTAA	5 cut(s)	69, 165, 420, 645, 841
SatI	GCNGC	3 cut(s)	408, 633, 717
Sau3AI	GATC	3 cut(s)	74, 280, 468
Sau96I	GGNCC	3 cut(s)	415, 568, 584
SchI	GAGTC	1 cut(s)	147
ScrFI	CCNGG	2 cut(s)	192, 235
SduI	GDGCHC	5 cut(s)	124, 369, 451, 594, 710
SfaNI	GCATC	1 cut(s)	247
SinI	GGWCC	2 cut(s)	415, 584
SnaBI	TACGTA	1 cut(s)	835
Sse9I	AATT	5 cut(s)	65, 82, 339, 649, 784
SsiI	CCGC	1 cut(s)	632
SspMI	CTAG	6 cut(s)	6, 36, 87, 249, 732, 767
StyD4I	CCNGG	2 cut(s)	190, 233
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	1 cut(s)	543
TaiI	ACGT	2 cut(s)	275, 837
TaqI	TCGA	2 cut(s)	241, 559
TasI	AATT	5 cut(s)	65, 82, 339, 649, 784
TatI	WGTACW	1 cut(s)	110
TauI	GCSGC	1 cut(s)	635
TfiI	GAWTC	2 cut(s)	310, 432
Tru1I	TTAA	5 cut(s)	69, 165, 420, 645, 841
Tru9I	TTAA	5 cut(s)	69, 165, 420, 645, 841
TscAI	CASTG	1 cut(s)	751
TseFI	GTSAC	2 cut(s)	344, 543
TseI	GCWGC	2 cut(s)	407, 716
Tsp45I	GTSAC	2 cut(s)	344, 543
TspDTI	ATGAA	1 cut(s)	819
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	751
Van91I	CCANNNNNTGG	1 cut(s)	59
VneI	GTGCAC	1 cut(s)	447
VpaK11BI	GGWCC	2 cut(s)	415, 584
XapI	RAATTY	2 cut(s)	82, 649
XbaI	TCTAGA	2 cut(s)	86, 766
XcmI	CCANNNNNNNNNTGG	1 cut(s)	578
XmiI	GTMKAC	1 cut(s)	23
XspI	CTAG	6 cut(s)	6, 36, 87, 249, 732, 767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.