Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001715

Physical Location & Seq

Genomic Coordinates Forward (+)

52015617 .. 52017264

Gene Structure 1648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20480

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGACGAGGCCTAGGCAAGACTTATATTCTAATGTGGGAGAAGCTGTCTCCTCTCAGCGTCTAAATGCTTTCAGATGTGTGCCTAAAGCCATGTTTGAGCGCTTCTCAGAAAAGGCAATAAAGGTGATTATGCTTGCACAAGAGGAAGCAAGGCGACTTGGTCACAACTTCATTGGTACAGAGCAGATACTTTTGGGTCTTATTGGTGAAGGAATTGGAATTGCTGCCATATATGAGAATCAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko01100 map01100

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N UVR

Protein Analysis

82

Amino Acids

9.18

Weight (kDa)

7.93

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clp_N	PF02861	34 - 76	1.9e-09	Clp repeat (R) N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21800 AT2G21800 AT2G21800 AT2G22140 AT2G22140
fragaria_vesca	FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_5g31350 FvH4_5g31350
malus_domestica	MD15G1335700.v1.1 MD15G1404100.v1.1
prunus_persica	Prupe.1G550600_v2.0.a1 Prupe.1G550600_v2.0.a1 Prupe.1G550600_v2.0.a1 Prupe.6G166800_v2.0.a1
pyrus_communis	pycom15g28970
rosa_chinensis	RchiOBHm_Chr2g0117911 RchiOBHm_Chr7g0226601 RchiOBHm_Chr7g0226611 RchiOBHm_Chr7g0228631
rosa_laevigata	RLG00000001714 RLG00000018383
rosa_multiflora	Rmu_sc0001423.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126110 Rroxscaffold_3G00230990 Rroxscaffold_3G00232670
rosa_rugosa	Rorug02G0214800 Rorug02G0214900 Rorug02G0214900 Rorug07G0238500 Rorug07G0238600
rosa_samantha	Rh2AG271200 Rh2BG282800 Rh2DG279100 Rh2DG297000 Rh7AG386100 Rh7AG403200 Rh7BG372700 Rh7BG372800 Rh7CG405400 Rh7CG422500 Rh7DG384700
rosa_wichuraiana	Rw2G021450 Rw7G032410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	178
AfeI	AGCGCT	1 cut(s)	101
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	52
Aor51HI	AGCGCT	1 cut(s)	101
AoxI	GGCC	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	224
AspA2I	CCTAGG	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	102
AsuHPI	GGTGA	2 cut(s)	136, 218
AvrII	CCTAGG	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	52
BfaI	CTAG	1 cut(s)	12
BfoI	RGCGCY	1 cut(s)	103
BisI	GCNGC	1 cut(s)	225
BlnI	CCTAGG	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	226
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
BsaJI	CCNNGG	1 cut(s)	11
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
BseDI	CCNNGG	1 cut(s)	11
BseMII	CTCAG	2 cut(s)	68, 120
BseRI	GAGGAG	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	211
BshFI	GGCC	1 cut(s)	10
BsmAI	GTCTC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	10
BspANI	GGCC	1 cut(s)	10
BspCNI	CTCAG	2 cut(s)	67, 119
BssECI	CCNNGG	1 cut(s)	11
BssT1I	CCWWGG	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	54, 106
BstH2I	RGCGCY	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	102
BstMAI	GTCTC	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	135
CfoI	GCGC	1 cut(s)	102
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	177
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	3 cut(s)	10, 44, 89
CviKI_1	RGCY	3 cut(s)	10, 44, 89
CviQI	GTAC	1 cut(s)	177
DdeI	CTNAG	2 cut(s)	54, 106
Eco130I	CCWWGG	1 cut(s)	11
Eco147I	AGGCCT	1 cut(s)	10
Eco47III	AGCGCT	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	11
FaeI	CATG	1 cut(s)	94
FaiI	YATR	6 cut(s)	25, 92, 131, 230, 232, 234
FatI	CATG	1 cut(s)	90
Fnu4HI	GCNGC	1 cut(s)	225
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	1 cut(s)	12
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	1 cut(s)	225
HaeII	RGCGCY	1 cut(s)	103
HaeIII	GGCC	1 cut(s)	10
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	94
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HinfI	GANTC	1 cut(s)	238
HphI	GGTGA	2 cut(s)	136, 218
Hpy188I	TCNGA	2 cut(s)	74, 109
HpyAV	CCTTC	1 cut(s)	203
HpyCH4V	TGCA	1 cut(s)	137
HpyF3I	CTNAG	2 cut(s)	54, 106
Hsp92II	CATG	1 cut(s)	94
HspAI	GCGC	1 cut(s)	100
Lsp1109I	GCAGC	1 cut(s)	211
MaeI	CTAG	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	161
MluCI	AATT	2 cut(s)	213, 219
MnlI	CCTC	2 cut(s)	61, 136
MseI	TTAA	1 cut(s)	247
NlaIII	CATG	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	161
PceI	AGGCCT	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	238
PflFI	GACNNNGTC	1 cut(s)	159
PkrI	GCNGC	1 cut(s)	226
PsyI	GACNNNGTC	1 cut(s)	159
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	247
SatI	GCNGC	1 cut(s)	225
SetI	ASST	2 cut(s)	46, 126
SgeI	CNNG	8 cut(s)	18, 24, 29, 103, 146, 152, 162, 170
Sse9I	AATT	2 cut(s)	213, 219
SseBI	AGGCCT	1 cut(s)	10
SspMI	CTAG	1 cut(s)	12
StuI	AGGCCT	1 cut(s)	10
StyI	CCWWGG	1 cut(s)	11
TasI	AATT	2 cut(s)	213, 219
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	1 cut(s)	247
Tru9I	TTAA	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	160
Tth111I	GACNNNGTC	1 cut(s)	159
XmaJI	CCTAGG	1 cut(s)	11
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.