MD15G1335700.v1.1

Crossover junction endonuclease

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
37590775 .. 37601451
10677 bp
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UTR
Exon/CDS
Intron
MD15G1335700.v1.1.491

Sequence Viewer

Length: 1695 bp
ATGTCGGAGCCAATCGTCCTCTCCGACGAAGAAGATTCATCCCCATTCCAACTGTTCCACTGTAAGAAACGCCGAACTGAACCAGACCTAAATCCAAACCCGAACCCGAACCCGAACCCAAACCCTACGGTTCTCGTCCTCGACGACGACCCTACCCCACAGAAGCCCCGCCCCACCTCCACACCTATCGTCGTCCCGGAGACCCCCATGTCTGATCTCGCAATTGTGAAATGCACGAAAGCCCCTTCTGACTTCCAATCTAGGGTTTCAGACTCCGATCACAACTTCCCTGGTGTTAATGGATTGATATGTTTGGAATCTGATAATGAACCTGAAAGTGGTCGTGGAAAGCAAAAGGAGAAAGAGAATGAATCGATCACTAGTGGCTTTGGTGTGGTGGAGGACTTAGATTGGAGGTTTAGTTTTGTCGAGTCCACATATCCTCTTGGAGATGATCTAGCACATATGTCTGAGGGGAATTCTTCACAACCAACTTTGCAAGATGATATTGATCAGGTACTTGATTATGCTGAGAAAGAAAATATAATGGATCAGATGGGCAACATTACAAAACCGAGAAGAAAAACTAAAGTTGTTACTGATAATGAAAATACAACAAAAGAAGCAACAGAAAGAAAGAAGCTGGCAAAAGAGGAACGGACACGCTTAATGGAGGAAAAGAAGCTCAAGAAGCTAGAAGAGAAGTTGCAGAAAGAAGCTCTGAAAGCTGAAGCAGCAGAGATGAAAAAAATCCAAAAAGAAAAGCAAAAGTGGGAAAAAGGGAAGTTTGCCTTAAAATCCATCGTGGCTGAGATTGATTCTAAAGTTGTGGAGTTGGGGTCAGTTGGAGGAAATTTGCTTACAAGGTTTGCTGAAAAAGGGTTAACATATCGTATAACATCAAATCCAATTGAAAGATCAATTGTCTGGACCATGACTGTTCCAGAACATCTTTCACAGCTTTCGCCCAAAGAAACAGAAATTCAATACATGTTGCTTGTGTATGAAGCTGAAGAATTTTGTAATGTTGTCATCAATGAATCTCTTTTGGATCATGTTCTTAGTGTTCGAAGTCAATATCCATCTTATACAGTGTGTTGTCTTACAAACAGGTTGATGGCATACATTAAGAAAAGGGAACAAGAACTGTACAAGAACCCAACAATTCATAATAGCTGGAGACGCCCACCTGTTGAGGAGGTGCTGGCAAAATTGACCACTAATTTTTATAAAGTACACTCCAGGCAGTGCGCAGATGAGGCTGAACTTGCTGAACATGTTGTTGGTTTAACATGCAGCCTGTCATCTTGCCAATTTAGAAAGAAGTTAACGAGACTTGATGTAAATGCTAATGGATCCCTTATCCCTAAGGACTGCATTGACCGAACTTCAATTAAAAAGAGCCCATGGTTAAAAGCTTTGGTAGCTATCCCTAAGGTACAACCGCGATTTGCTATTGCTATATGGAAGAAGTACCCTACCATGAAATCTCTTTTGAGTGTTTACATGGACCCAAATATATCAGTTCATGAAAAGGAATTTCTGCTCAAGGACTTGACAACAGAAGGTTTACTTGGTGATGACAGAAGATTAGGTGACGTTTGTTCCAAGAGAGTGTACAGAATACTTATGGCACAAAGTGGGTGCATCAAAACTGATGATATTGAGGATGGTGCTGATTTTTTCCGGCGTTGA

Protein Analysis

565

Amino Acids

64.19

Weight (kDa)

6.12

Isoelectric Point (pI)

46.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERCC4 PF02732 272 - 428 3.7e-13 ERCC4 domain
EME1-MUS81_C PF21292 470 - 540 2.2e-08 EME1/MUS81, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1230
AasI GACNNNNNNGTC 1 cut(s) 208
Acc16I TGCGCA 1 cut(s) 1252
AccII CGCG 1 cut(s) 1447
AciI CCGC 2 cut(s) 169, 1445
AclWI GGATC 4 cut(s) 558, 1059, 1350, 1363
AcsI RAATTY 5 cut(s) 478, 853, 981, 1016, 1538
AcuI CTGAAG 2 cut(s) 750, 1032
AcyI GRCGYC 1 cut(s) 1183
AdeI CACNNNGTG 1 cut(s) 1640
AfaI GTAC 6 cut(s) 519, 1151, 1236, 1440, 1475, 1619
AfiI CCNNNNNNNGG 2 cut(s) 262, 338
AflIII ACRYGT 2 cut(s) 990, 1276
AgsI TTSAA 3 cut(s) 914, 986, 1392
AhlI ACTAGT 1 cut(s) 380
AjnI CCWGG 2 cut(s) 289, 1241
AjuI GAANNNNNNNTTGG 4 cut(s) 1266, 1298, 1557, 1589
Alw26I GTCTC 3 cut(s) 194, 1174, 1327
AlwI GGATC 4 cut(s) 558, 1059, 1350, 1363
ApeKI GCWGC 2 cut(s) 734, 1296
ApoI RAATTY 5 cut(s) 478, 853, 981, 1016, 1538
AspLEI GCGC 1 cut(s) 1253
AspS9I GGNCC 2 cut(s) 930, 1510
AsuC2I CCSGG 1 cut(s) 197
AsuHPI GGTGA 2 cut(s) 1589, 1607
AsuII TTCGAA 1 cut(s) 1069
AvaII GGWCC 2 cut(s) 930, 1510
AxyI CCTNAGG 2 cut(s) 1368, 1434
BamHI GGATCC 1 cut(s) 1355
BanII GRGCYC 1 cut(s) 1406
BbvI GCAGC 2 cut(s) 746, 1308
BccI CCATC 5 cut(s) 550, 809, 1090, 1111, 1664
BciT130I CCWGG 2 cut(s) 291, 1243
BclI TGATCA 1 cut(s) 511
BcnI CCSGG 1 cut(s) 197
BcoDI GTCTC 3 cut(s) 194, 1174, 1327
BcuI ACTAGT 1 cut(s) 380
BfaI CTAG 4 cut(s) 261, 381, 458, 695
BisI GCNGC 2 cut(s) 735, 1297
BlsI GCNGC 2 cut(s) 736, 1298
Bme1390I CCNGG 3 cut(s) 197, 291, 1243
Bme18I GGWCC 2 cut(s) 930, 1510
BmgT120I GGNCC 2 cut(s) 930, 1510
BmiI GGNNCC 3 cut(s) 9, 1357, 1512
BmrFI CCNGG 3 cut(s) 197, 291, 1243
BmsI GCATC 1 cut(s) 1656
BpmI CTGGAG 2 cut(s) 1198, 1225
Bpu14I TTCGAA 1 cut(s) 1069
BpuEI CTTGAG 2 cut(s) 671, 1532
BpuMI CCSGG 1 cut(s) 197
Bsa29I ATCGAT 1 cut(s) 374
BsaBI GATNNNNATC 1 cut(s) 510
BsaHI GRCGYC 1 cut(s) 1183
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 2 cut(s) 289, 1406
BsaXI ACNNNNNCTCC 4 cut(s) 406, 436, 824, 854
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 338
Bse21I CCTNAGG 2 cut(s) 1368, 1434
Bse8I GATNNNNATC 1 cut(s) 510
BseBI CCWGG 2 cut(s) 291, 1243
BseCI ATCGAT 1 cut(s) 374
BseDI CCNNGG 2 cut(s) 289, 1406
BseGI GGATG 2 cut(s) 38, 1675
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 2 cut(s) 262, 338
BseMII CTCAG 3 cut(s) 462, 522, 801
BseRI GAGGAG 1 cut(s) 1211
BseXI GCAGC 2 cut(s) 746, 1308
Bsh1236I CGCG 1 cut(s) 1447
BshVI ATCGAT 1 cut(s) 374
BsiSI CCGG 2 cut(s) 197, 1687
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 2 cut(s) 262, 338
BsmAI GTCTC 3 cut(s) 194, 1174, 1327
BsmBI CGTCTC 1 cut(s) 1174
BsmFI GGGAC 1 cut(s) 179
Bso31I GGTCTC 1 cut(s) 194
Bsp119I TTCGAA 1 cut(s) 1069
Bsp1286I GDGCHC 1 cut(s) 1406
Bsp1407I TGTACA 2 cut(s) 1149, 1617
Bsp143I GATC 9 cut(s) 214, 277, 375, 454, 511, 550, 917, 1051, 1355
Bsp19I CCATGG 1 cut(s) 1406
BspACI CCGC 2 cut(s) 169, 1445
BspCNI CTCAG 3 cut(s) 463, 523, 802
BspDI ATCGAT 1 cut(s) 374
BspFNI CGCG 1 cut(s) 1447
BspHI TCATGA 1 cut(s) 1528
BspLI GGNNCC 3 cut(s) 9, 1357, 1512
BspPI GGATC 4 cut(s) 558, 1059, 1350, 1363
BspT104I TTCGAA 1 cut(s) 1069
BspTNI GGTCTC 1 cut(s) 194
BsrGI TGTACA 2 cut(s) 1149, 1617
BssECI CCNNGG 2 cut(s) 289, 1406
BssMI GATC 9 cut(s) 214, 277, 375, 454, 511, 550, 917, 1051, 1355
BssNI GRCGYC 1 cut(s) 1183
BssT1I CCWWGG 1 cut(s) 1406
Bst2UI CCWGG 2 cut(s) 291, 1243
Bst4CI ACNGT 6 cut(s) 54, 62, 130, 940, 1093, 1149
Bst6I CTCTTC 1 cut(s) 693
BstACI GRCGYC 1 cut(s) 1183
BstAUI TGTACA 2 cut(s) 1149, 1617
BstBI TTCGAA 1 cut(s) 1069
BstC8I GCNNGC 2 cut(s) 645, 1206
BstDEI CTNAG 7 cut(s) 406, 471, 531, 810, 1061, 1368, 1434
BstDSI CCRYGG 1 cut(s) 1406
BstF5I GGATG 2 cut(s) 38, 1675
BstFNI CGCG 1 cut(s) 1447
BstHHI GCGC 1 cut(s) 1253
BstKTI GATC 9 cut(s) 217, 280, 378, 457, 514, 553, 920, 1054, 1358
BstMAI GTCTC 3 cut(s) 194, 1174, 1327
BstMBI GATC 9 cut(s) 214, 277, 375, 454, 511, 550, 917, 1051, 1355
BstMWI GCNNNNNNNGC 7 cut(s) 691, 725, 734, 1182, 1259, 1268, 1424
BstNI CCWGG 2 cut(s) 291, 1243
BstNSI RCATGY 3 cut(s) 994, 1280, 1296
BstSCI CCNGG 3 cut(s) 195, 289, 1241
BstUI CGCG 1 cut(s) 1447
BstV1I GCAGC 2 cut(s) 746, 1308
BstX2I RGATCY 1 cut(s) 1355
BstYI RGATCY 1 cut(s) 1355
Bsu15I ATCGAT 1 cut(s) 374
Bsu36I CCTNAGG 2 cut(s) 1368, 1434
BsuTUI ATCGAT 1 cut(s) 374
BtgI CCRYGG 1 cut(s) 1406
BtsCI GGATG 2 cut(s) 38, 1675
BtsI GCAGTG 1 cut(s) 1253
BtsIMutI CAGTG 3 cut(s) 58, 1098, 1253
Cac8I GCNNGC 2 cut(s) 645, 1206
CciI TCATGA 1 cut(s) 1528
CfoI GCGC 1 cut(s) 1253
Cfr13I GGNCC 2 cut(s) 930, 1510
ClaI ATCGAT 1 cut(s) 374
CseI GACGC 1 cut(s) 1191
Csp6I GTAC 6 cut(s) 518, 1150, 1235, 1439, 1474, 1618
CviQI GTAC 6 cut(s) 518, 1150, 1235, 1439, 1474, 1618
DdeI CTNAG 7 cut(s) 406, 471, 531, 810, 1061, 1368, 1434
DpnI GATC 9 cut(s) 216, 279, 377, 456, 513, 552, 919, 1053, 1357
DpnII GATC 9 cut(s) 214, 277, 375, 454, 511, 550, 917, 1051, 1355
DraIII CACNNNGTG 1 cut(s) 1640
DrdI GACNNNNNNGTC 1 cut(s) 208
DseDI GACNNNNNNGTC 1 cut(s) 208
Eam1104I CTCTTC 1 cut(s) 693
EarI CTCTTC 1 cut(s) 693
Eco130I CCWWGG 1 cut(s) 1406
Eco24I GRGCYC 1 cut(s) 1406
Eco31I GGTCTC 1 cut(s) 194
Eco47I GGWCC 2 cut(s) 930, 1510
Eco57I CTGAAG 2 cut(s) 750, 1032
Eco81I CCTNAGG 2 cut(s) 1368, 1434
EcoRI GAATTC 1 cut(s) 478
EcoRII CCWGG 2 cut(s) 289, 1241
EcoT14I CCWWGG 1 cut(s) 1406
EcoT38I GRGCYC 1 cut(s) 1406
ErhI CCWWGG 1 cut(s) 1406
Esp3I CGTCTC 1 cut(s) 1174
FalI AAGNNNNNCTT 4 cut(s) 776, 808, 1557, 1589
FaqI GGGAC 1 cut(s) 179
FauI CCCGC 1 cut(s) 176
FauNDI CATATG 1 cut(s) 465
FbaI TGATCA 1 cut(s) 511
Fnu4HI GCNGC 2 cut(s) 735, 1297
FokI GGATG 2 cut(s) 25, 1682
FriOI GRGCYC 1 cut(s) 1406
Fsp4HI GCNGC 2 cut(s) 735, 1297
FspBI CTAG 4 cut(s) 261, 381, 458, 695
FspI TGCGCA 1 cut(s) 1252
GlaI GCGC 1 cut(s) 1252
GluI GCNGC 2 cut(s) 735, 1297
GsuI CTGGAG 2 cut(s) 1198, 1225
HapII CCGG 2 cut(s) 197, 1687
HgaI GACGC 1 cut(s) 1191
HhaI GCGC 1 cut(s) 1253
Hin1I GRCGYC 1 cut(s) 1183
Hin6I GCGC 1 cut(s) 1251
HinP1I GCGC 1 cut(s) 1251
HincII GTYRAC 2 cut(s) 885, 1329
HindII GTYRAC 2 cut(s) 885, 1329
HindIII AAGCTT 1 cut(s) 1416
HinfI GANTC 7 cut(s) 35, 272, 317, 371, 431, 818, 1040
HpaI GTTAAC 2 cut(s) 885, 1329
HpaII CCGG 2 cut(s) 197, 1687
HphI GGTGA 2 cut(s) 1589, 1607
Hpy166II GTNNAC 7 cut(s) 435, 885, 1237, 1329, 1504, 1571, 1618
Hpy188III TCNNGA 4 cut(s) 688, 928, 944, 1529
Hpy8I GTNNAC 7 cut(s) 435, 885, 1237, 1329, 1504, 1571, 1618
Hpy99I CGWCG 4 cut(s) 29, 146, 149, 194
HpyAV CCTTC 2 cut(s) 255, 1559
HpyCH4III ACNGT 6 cut(s) 54, 62, 130, 940, 1093, 1149
HpyCH4IV ACGT 1 cut(s) 1599
HpyCH4V TGCA 6 cut(s) 234, 499, 709, 1296, 1377, 1647
HpyF10VI GCNNNNNNNGC 7 cut(s) 691, 725, 734, 1182, 1259, 1268, 1424
HpyF3I CTNAG 7 cut(s) 406, 471, 531, 810, 1061, 1368, 1434
HpySE526I ACGT 1 cut(s) 1599
Hsp92I GRCGYC 1 cut(s) 1183
HspAI GCGC 1 cut(s) 1251
Ksp22I TGATCA 1 cut(s) 511
KspAI GTTAAC 2 cut(s) 885, 1329
Kzo9I GATC 9 cut(s) 214, 277, 375, 454, 511, 550, 917, 1051, 1355
LmnI GCTCC 1 cut(s) 7
Lsp1109I GCAGC 2 cut(s) 746, 1308
LweI GCATC 1 cut(s) 1656
MaeI CTAG 4 cut(s) 261, 381, 458, 695
MaeII ACGT 1 cut(s) 1599
MaeIII GTNAC 2 cut(s) 595, 1595
MalI GATC 9 cut(s) 216, 279, 377, 456, 513, 552, 919, 1053, 1357
MboI GATC 9 cut(s) 214, 277, 375, 454, 511, 550, 917, 1051, 1355
MboII GAAGA 8 cut(s) 41, 44, 474, 591, 710, 1025, 1480, 1599
MfeI CAATTG 3 cut(s) 222, 909, 921
MflI RGATCY 1 cut(s) 1355
MhlI GDGCHC 1 cut(s) 1406
MlyI GAGTC 2 cut(s) 266, 440
MmeI TCCRAC 3 cut(s) 48, 73, 826
MseI TTAA 9 cut(s) 297, 668, 794, 884, 1128, 1289, 1328, 1395, 1412
MspI CCGG 2 cut(s) 197, 1687
MspR9I CCNGG 3 cut(s) 197, 291, 1243
MunI CAATTG 3 cut(s) 222, 909, 921
MvaI CCWGG 2 cut(s) 291, 1243
MvnI CGCG 1 cut(s) 1447
MwoI GCNNNNNNNGC 7 cut(s) 691, 725, 734, 1182, 1259, 1268, 1424
NciI CCSGG 1 cut(s) 197
NcoI CCATGG 1 cut(s) 1406
NdeI CATATG 1 cut(s) 465
NdeII GATC 9 cut(s) 214, 277, 375, 454, 511, 550, 917, 1051, 1355
NlaIV GGNNCC 3 cut(s) 9, 1357, 1512
NmuCI GTSAC 1 cut(s) 1595
NsbI TGCGCA 1 cut(s) 1252
NspI RCATGY 3 cut(s) 994, 1280, 1296
NspV TTCGAA 1 cut(s) 1069
PagI TCATGA 1 cut(s) 1528
PciI ACATGT 2 cut(s) 990, 1276
PcsI WCGNNNNNNNCGW 2 cut(s) 21, 141
PfeI GAWTC 5 cut(s) 35, 317, 371, 818, 1040
PfoI TCCNGGA 1 cut(s) 195
PkrI GCNGC 2 cut(s) 736, 1298
PleI GAGTC 2 cut(s) 266, 439
PpsI GAGTC 2 cut(s) 266, 439
PscI ACATGT 2 cut(s) 990, 1276
PsiI TTATAA 1 cut(s) 1230
Psp6I CCWGG 2 cut(s) 289, 1241
PspGI CCWGG 2 cut(s) 289, 1241
PspN4I GGNNCC 3 cut(s) 9, 1357, 1512
PspPI GGNCC 2 cut(s) 930, 1510
PsuI RGATCY 1 cut(s) 1355
RsaI GTAC 6 cut(s) 519, 1151, 1236, 1440, 1475, 1619
RsaNI GTAC 6 cut(s) 518, 1150, 1235, 1439, 1474, 1618
SaqAI TTAA 9 cut(s) 297, 668, 794, 884, 1128, 1289, 1328, 1395, 1412
SatI GCNGC 2 cut(s) 735, 1297
Sau3AI GATC 9 cut(s) 214, 277, 375, 454, 511, 550, 917, 1051, 1355
Sau96I GGNCC 2 cut(s) 930, 1510
SchI GAGTC 2 cut(s) 266, 440
ScrFI CCNGG 3 cut(s) 197, 291, 1243
SduI GDGCHC 1 cut(s) 1406
SfaNI GCATC 1 cut(s) 1656
SfuI TTCGAA 1 cut(s) 1069
SinI GGWCC 2 cut(s) 930, 1510
SmlI CTYRAG 2 cut(s) 686, 1547
SmoI CTYRAG 2 cut(s) 686, 1547
SpeI ACTAGT 1 cut(s) 380
SsiI CCGC 2 cut(s) 169, 1445
SspMI CTAG 4 cut(s) 261, 381, 458, 695
StyD4I CCNGG 3 cut(s) 195, 289, 1241
StyI CCWWGG 1 cut(s) 1406
TaaI ACNGT 6 cut(s) 54, 62, 130, 940, 1093, 1149
TaiI ACGT 1 cut(s) 1602
TaqI TCGA 4 cut(s) 141, 374, 429, 1069
TaqII GACCGA 1 cut(s) 1398
TatI WGTACW 3 cut(s) 1149, 1234, 1617
TfiI GAWTC 5 cut(s) 35, 317, 371, 818, 1040
Tru1I TTAA 9 cut(s) 297, 668, 794, 884, 1128, 1289, 1328, 1395, 1412
Tru9I TTAA 9 cut(s) 297, 668, 794, 884, 1128, 1289, 1328, 1395, 1412
TscAI CASTG 3 cut(s) 65, 1098, 1253
TseFI GTSAC 1 cut(s) 1595
TseI GCWGC 2 cut(s) 734, 1296
Tsp45I GTSAC 1 cut(s) 1595
TspGWI ACGGA 1 cut(s) 673
TspRI CASTG 3 cut(s) 65, 1098, 1253
VpaK11BI GGWCC 2 cut(s) 930, 1510
XapI RAATTY 5 cut(s) 478, 853, 981, 1016, 1538
XceI RCATGY 3 cut(s) 994, 1280, 1296
XspI CTAG 4 cut(s) 261, 381, 458, 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.