Rroxscaffold_3G00230990

Belongs to the ClpA ClpB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001715
Physical Location & Seq
Reverse (-)
15911927 .. 15912803
877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00230990.1

Sequence Viewer

Length: 375 bp
ATGCTTTCAGATGTGCGACTTGGTCACAACTTCGTTGGCACAGAGCAGATACTTTTGGGTCTTATTGGTGAAGGAACTGGAATTGCTGCCAGGGTCCTTAAATATATGAGAATCAATCTTAAAGGTGCACGCGTTGAAGTGGAAAAGATCATTGGAAGGGGTAGTGGCTTTGTTGCTGTTGAAATTCCATTCACTCCTCTTGCAATGCGAGTTATTCGTATGGTGGGCGAGAGCACAGAACCTATTCTTGTTGGAGCTGGACAGGGAACCAGTGGCTACAAGATGCCAATTCTAGAGGAGTATGGAACCAACTTGACTAAGCTAGCAGAGGAGGGGAAAGCTGGATCCTGTTGTTGGAAGACAACCATAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01100 map01100
Pfam Domains
Protein Families
AAA AAA_2 ClpB_D2-small Clp_N UVR

Protein Analysis

124

Amino Acids

13.3

Weight (kDa)

8.64

Isoelectric Point (pI)

28.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clp_N PF02861 6 - 73 6.9e-10 Clp repeat (R) N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 132
AclWI GGATC 2 cut(s) 339, 352
AcsI RAATTY 1 cut(s) 183
AfiI CCNNNNNNNGG 1 cut(s) 354
AflIII ACRYGT 1 cut(s) 130
AgsI TTSAA 2 cut(s) 137, 182
AjnI CCWGG 1 cut(s) 89
AjuI GAANNNNNNNTTGG 2 cut(s) 135, 167
AluBI AGCT 3 cut(s) 257, 322, 341
AluI AGCT 3 cut(s) 257, 322, 341
Alw21I GWGCWC 2 cut(s) 130, 236
Alw44I GTGCAC 1 cut(s) 126
AlwI GGATC 2 cut(s) 339, 352
ApaLI GTGCAC 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 86
ApoI RAATTY 1 cut(s) 183
Asp700I GAANNNNTTC 1 cut(s) 243
AspS9I GGNCC 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 80
AsuNHI GCTAGC 1 cut(s) 322
AvaII GGWCC 1 cut(s) 94
BaeGI GKGCMC 1 cut(s) 130
BamHI GGATCC 1 cut(s) 344
BbsI GAAGAC 1 cut(s) 365
Bbv12I GWGCWC 2 cut(s) 130, 236
BbvI GCAGC 1 cut(s) 73
BciT130I CCWGG 1 cut(s) 91
BfaI CTAG 2 cut(s) 293, 323
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme1390I CCNGG 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 4 cut(s) 95, 268, 307, 346
BmrFI CCNGG 1 cut(s) 91
BmsI GCATC 1 cut(s) 273
BmtI GCTAGC 1 cut(s) 326
BpiI GAAGAC 1 cut(s) 365
BsaJI CCNNGG 1 cut(s) 90
Bsc4I CCNNNNNNNGG 1 cut(s) 354
Bse1I ACTGG 2 cut(s) 82, 270
Bse3DI GCAATG 1 cut(s) 210
BseBI CCWGG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 354
BseMI GCAATG 1 cut(s) 210
BseNI ACTGG 2 cut(s) 82, 270
BseRI GAGGAG 3 cut(s) 186, 311, 344
BseSI GKGCMC 1 cut(s) 130
BseXI GCAGC 1 cut(s) 73
Bsh1236I CGCG 1 cut(s) 132
BsiHKAI GWGCWC 2 cut(s) 130, 236
BslI CCNNNNNNNGG 1 cut(s) 354
Bsp1286I GDGCHC 2 cut(s) 130, 236
Bsp143I GATC 2 cut(s) 147, 344
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 4 cut(s) 95, 268, 307, 346
BspOI GCTAGC 1 cut(s) 326
BspPI GGATC 2 cut(s) 339, 352
BsrDI GCAATG 1 cut(s) 210
BsrI ACTGG 2 cut(s) 82, 270
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 2 cut(s) 147, 344
Bst2UI CCWGG 1 cut(s) 91
BstC8I GCNNGC 2 cut(s) 130, 324
BstDEI CTNAG 1 cut(s) 318
BstFNI CGCG 1 cut(s) 132
BstKTI GATC 2 cut(s) 150, 347
BstMBI GATC 2 cut(s) 147, 344
BstNI CCWGG 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 89
BstSLI GKGCMC 1 cut(s) 130
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 73
BstV2I GAAGAC 1 cut(s) 365
BstX2I RGATCY 1 cut(s) 344
BstYI RGATCY 1 cut(s) 344
BtsIMutI CAGTG 1 cut(s) 277
Cac8I GCNNGC 2 cut(s) 130, 324
Cfr13I GGNCC 1 cut(s) 94
CviJI RGCY 5 cut(s) 168, 257, 276, 322, 341
CviKI_1 RGCY 5 cut(s) 168, 257, 276, 322, 341
DdeI CTNAG 1 cut(s) 318
DpnI GATC 2 cut(s) 149, 346
DpnII GATC 2 cut(s) 147, 344
Eco47I GGWCC 1 cut(s) 94
EcoO109I RGGNCCY 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 89
FaiI YATR 5 cut(s) 105, 107, 221, 303, 368
Fnu4HI GCNGC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 2 cut(s) 293, 323
GluI GCNGC 1 cut(s) 87
HinfI GANTC 1 cut(s) 111
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 128
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 1 cut(s) 293
Hpy8I GTNNAC 1 cut(s) 128
HpyAV CCTTC 2 cut(s) 65, 150
HpyCH4V TGCA 2 cut(s) 128, 203
HpyF3I CTNAG 1 cut(s) 318
Kzo9I GATC 2 cut(s) 147, 344
LmnI GCTCC 1 cut(s) 254
LpnPI CCDG 8 cut(s) 63, 76, 103, 243, 248, 283, 327, 361
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 1 cut(s) 273
MaeI CTAG 2 cut(s) 293, 323
MaeIII GTNAC 1 cut(s) 23
MalI GATC 2 cut(s) 149, 346
MboI GATC 2 cut(s) 147, 344
MboII GAAGA 1 cut(s) 370
MflI RGATCY 1 cut(s) 344
MhlI GDGCHC 2 cut(s) 130, 236
MluCI AATT 4 cut(s) 81, 183, 288, 370
MluI ACGCGT 1 cut(s) 130
MmeI TCCRAC 2 cut(s) 232, 335
MnlI CCTC 4 cut(s) 207, 289, 322, 325
MroXI GAANNNNTTC 1 cut(s) 243
MseI TTAA 2 cut(s) 99, 120
MspR9I CCNGG 1 cut(s) 91
MvaI CCWGG 1 cut(s) 91
MvnI CGCG 1 cut(s) 132
NdeII GATC 2 cut(s) 147, 344
NheI GCTAGC 1 cut(s) 322
NlaIV GGNNCC 4 cut(s) 95, 268, 307, 346
NmuCI GTSAC 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 243
PfeI GAWTC 1 cut(s) 111
PflFI GACNNNGTC 1 cut(s) 21
PkrI GCNGC 1 cut(s) 88
PpuMI RGGWCCY 1 cut(s) 94
Psp5II RGGWCCY 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 89
PspGI CCWGG 1 cut(s) 89
PspN4I GGNNCC 4 cut(s) 95, 268, 307, 346
PspPI GGNCC 1 cut(s) 94
PspPPI RGGWCCY 1 cut(s) 94
PsuI RGATCY 1 cut(s) 344
PsyI GACNNNGTC 1 cut(s) 21
SaqAI TTAA 2 cut(s) 99, 120
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 2 cut(s) 147, 344
Sau96I GGNCC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 91
SduI GDGCHC 2 cut(s) 130, 236
SetI ASST 5 cut(s) 127, 244, 259, 324, 343
SfaNI GCATC 1 cut(s) 273
SinI GGWCC 1 cut(s) 94
Sse9I AATT 4 cut(s) 81, 183, 288, 370
SspMI CTAG 2 cut(s) 293, 323
StyD4I CCNGG 1 cut(s) 89
TasI AATT 4 cut(s) 81, 183, 288, 370
TfiI GAWTC 1 cut(s) 111
Tru1I TTAA 2 cut(s) 99, 120
Tru9I TTAA 2 cut(s) 99, 120
TscAI CASTG 1 cut(s) 277
TseFI GTSAC 1 cut(s) 23
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 23
TspRI CASTG 1 cut(s) 277
Tth111I GACNNNGTC 1 cut(s) 21
VneI GTGCAC 1 cut(s) 126
VpaK11BI GGWCC 1 cut(s) 94
XapI RAATTY 1 cut(s) 183
XbaI TCTAGA 1 cut(s) 292
XmnI GAANNNNTTC 1 cut(s) 243
XspI CTAG 2 cut(s) 293, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.