Prupe.6G166800_v2.0.a1

Crossover junction endonuclease

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
16952698 .. 16962726
10029 bp
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UTR
Exon/CDS
Intron
Prupe.6G166800.1

Sequence Viewer

Length: 1680 bp
ATGTCGGAGCCAATCATTCTCTCCGATGAAGAAGACCAGAATGGCCTCTCAACCCCATTCCAACCATTCCACTGTAAGAAACGCCGAACCCAACTGGACCCAAACCCAATCCCTACGGTTCTGGTCCTCGACGACGACCCGACCCCACAGAAGCAGCCCGGCCCCACCTCCACTCCTGACTTCGTCATGGAGACCCCCATGTCTGATCTCGCAATTGTGAAATGCACCAAAGCCCCTTCCCACTTCCAAGCTAGGGTTTCAGACTCCGAGCACAAGTTCCCTGGTGTTAATGGACTGATATGTTTGGAATCTGATAATGAGCCTGAAAGTGGTCATGCAAGGAAAAAGGGGAAGGAGATTGAATCCATCGCTAGTGGGTGTGATGTGGTGAAGGACTTAGATTGGAGGTTTAGTTTTGTTGAGTCCACATGTTCTCTTGGAGATGCTGAGCTAGCACATATGTCTGAGGGGAATTTTTCACAATCTACTTTGCAAGATGATATTGATCAGGTACTTGATTATCCAGAAAATAGAATGGATCAGATGGGAAACATCATGAAGCAGAGAAGGACTACAGCTATTACTGATAATGAAAACATTACAAAAGAAGCAACAGGAAGAAGGAAGCTGACAAAAGAGGAAAGAACGCGCTTAATGGAAGAAAAGAAGCTAAAGAAGATACAAGAGAAATTGCAAAGAGAAGCTCTGAAAGCTGAAGCAGCAGAGATGAAAAAAATACAGAAAGAAAAGCAAAAGTGGGAAAAAGGGAAGTTTGCCCTAAAATCCATCGTTGCTGAGATTGATTCTAAAGTAGTGGAGTTGGGGTCAGTTGGAGGAAATTTGCTTACAAGGTTTGCTGAAAAGGGGCTAACATACCGTATAACATCAAATCCAATTGAAAGATCAATTGTCTGGACCATGACTGTCCCAGAACATATTTCACAGCTTTCCCCTGAAGAAATAGAGATTCAATATATATTGCTCGTGTATGAAGCTGAAGAGTTTTGTAACCTTGTCATCAATGAATCTCTTTTGGATCATGTTTTTAGTGTTCGAAGTCGTTATCCATCGTATACAGTGTGTTATCTTACAAATAGGTTGATGGCATACATTAATAAAAGGGAAAAAGAGCTGTACAAGAACCCGACAAATCATAGTGGCCGGAGACTCCCACCTGTTGAGGAGGCGCTCGCAAAATTGACCACTAATTTTTTTAAAGTACACTCCAGGCAGTGTATGGATGAGGCTGAACTTGCGGAACATGTTGTTGGTTTAACATGCAGCCTGTCATCCTGCCAATTTAGAAAGAAGTTAACGAGATTGGATGTAAATGCTAATGGATCCCTTATCCCTAAGGACTGCCTTGACCGAAATTTAATTAAAAAGAGCCCATGGTTAAAAGCTTTGGTAGCTATCCCTAAGGTACAGCCACGATTTGCTATTGCTATATGGAAGAAGTACCCTACCATGAAATCTCTTTTGAGTATTTACATGGACCCAAATATATCAGTTCATGAAAAGGAATTTCTGCTGAAGGACTTGACAACCGAAGGTTTACTTGGTGATGATAGAAGATTAGGTGAAGTTTGTTCCAAGAGAGTGTACAGAATACTTATGGCACAAAGTGGATGCATCAAAACTGATGATGTCGAGGATGGTGCTGATTTCTTCAGGCATTAA

Protein Analysis

560

Amino Acids

63.68

Weight (kDa)

6.51

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 199
AccI GTMKAC 1 cut(s) 1073
AccII CGCG 1 cut(s) 649
AciI CCGC 1 cut(s) 1256
AclWI GGATC 4 cut(s) 546, 1044, 1335, 1348
AcoI YGGCCR 1 cut(s) 1159
AcsI RAATTY 4 cut(s) 472, 838, 1372, 1523
AcuI CTGAAG 5 cut(s) 735, 975, 1017, 1553, 1654
AdeI CACNNNGTG 1 cut(s) 1625
AfaI GTAC 6 cut(s) 513, 1136, 1221, 1425, 1460, 1604
AfiI CCNNNNNNNGG 2 cut(s) 253, 329
AflIII ACRYGT 2 cut(s) 428, 1261
AgsI TTSAA 3 cut(s) 362, 899, 971
AjnI CCWGG 2 cut(s) 280, 1226
AjuI GAANNNNNNNTTGG 4 cut(s) 1251, 1283, 1542, 1574
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 2 cut(s) 185, 1159
AlwI GGATC 4 cut(s) 546, 1044, 1335, 1348
AoxI GGCC 3 cut(s) 43, 160, 1159
ApeKI GCWGC 3 cut(s) 154, 719, 1281
ApoI RAATTY 4 cut(s) 472, 838, 1372, 1523
AseI ATTAAT 1 cut(s) 1113
AspLEI GCGC 2 cut(s) 651, 1189
AspS9I GGNCC 5 cut(s) 97, 124, 161, 915, 1495
AsuC2I CCSGG 1 cut(s) 159
AsuHPI GGTGA 3 cut(s) 400, 1574, 1592
AsuII TTCGAA 1 cut(s) 1054
AsuNHI GCTAGC 1 cut(s) 451
AvaII GGWCC 4 cut(s) 97, 124, 915, 1495
AxyI CCTNAGG 2 cut(s) 1353, 1419
BamHI GGATCC 1 cut(s) 1340
BanII GRGCYC 1 cut(s) 1391
BauI CACGAG 1 cut(s) 983
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 3 cut(s) 166, 731, 1293
BccI CCATC 6 cut(s) 374, 538, 794, 1075, 1096, 1649
BcgI CGANNNNNNTGC 2 cut(s) 1640, 1674
BciT130I CCWGG 2 cut(s) 282, 1228
BclI TGATCA 1 cut(s) 505
BcnI CCSGG 1 cut(s) 159
BcoDI GTCTC 2 cut(s) 185, 1159
BfaI CTAG 3 cut(s) 252, 372, 452
BfmI CTRYAG 1 cut(s) 573
BfoI RGCGCY 1 cut(s) 1190
BisI GCNGC 3 cut(s) 155, 720, 1282
BlpI GCTNAGC 1 cut(s) 447
BlsI GCNGC 3 cut(s) 156, 721, 1283
Bme1390I CCNGG 3 cut(s) 159, 282, 1228
Bme18I GGWCC 4 cut(s) 97, 124, 915, 1495
BmgT120I GGNCC 5 cut(s) 97, 124, 161, 915, 1495
BmiI GGNNCC 5 cut(s) 9, 99, 163, 1342, 1497
BmrFI CCNGG 3 cut(s) 159, 282, 1228
BmsI GCATC 3 cut(s) 433, 1619, 1641
BmtI GCTAGC 1 cut(s) 455
BpiI GAAGAC 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 1210
Bpu1102I GCTNAGC 1 cut(s) 447
Bpu14I TTCGAA 1 cut(s) 1054
BpuMI CCSGG 1 cut(s) 159
BsaBI GATNNNNATC 1 cut(s) 504
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 2 cut(s) 280, 1391
BsaXI ACNNNNNCTCC 6 cut(s) 157, 187, 397, 427, 809, 839
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 329
Bse1I ACTGG 1 cut(s) 99
Bse21I CCTNAGG 2 cut(s) 1353, 1419
Bse8I GATNNNNATC 1 cut(s) 504
BseBI CCWGG 2 cut(s) 282, 1228
BseDI CCNNGG 2 cut(s) 280, 1391
BseGI GGATG 5 cut(s) 1246, 1289, 1330, 1634, 1660
BseJI GATNNNNATC 1 cut(s) 504
BseLI CCNNNNNNNGG 2 cut(s) 253, 329
BseMII CTCAG 3 cut(s) 438, 456, 786
BseNI ACTGG 1 cut(s) 99
BseRI GAGGAG 1 cut(s) 1196
BseXI GCAGC 3 cut(s) 166, 731, 1293
Bsh1236I CGCG 1 cut(s) 649
BshFI GGCC 3 cut(s) 45, 162, 1161
BsiHKAI GWGCWC 1 cut(s) 273
BsiSI CCGG 2 cut(s) 159, 1162
BslFI GGGAC 1 cut(s) 911
BslI CCNNNNNNNGG 2 cut(s) 253, 329
BsmAI GTCTC 2 cut(s) 185, 1159
BsmFI GGGAC 1 cut(s) 911
BsnI GGCC 3 cut(s) 45, 162, 1161
Bso31I GGTCTC 1 cut(s) 185
Bsp119I TTCGAA 1 cut(s) 1054
Bsp1286I GDGCHC 2 cut(s) 273, 1391
Bsp1407I TGTACA 2 cut(s) 1134, 1602
Bsp143I GATC 6 cut(s) 205, 505, 538, 902, 1036, 1340
Bsp1720I GCTNAGC 1 cut(s) 447
Bsp19I CCATGG 1 cut(s) 1391
BspACI CCGC 1 cut(s) 1256
BspANI GGCC 3 cut(s) 45, 162, 1161
BspCNI CTCAG 3 cut(s) 439, 457, 787
BspFNI CGCG 1 cut(s) 649
BspHI TCATGA 2 cut(s) 555, 1513
BspLI GGNNCC 5 cut(s) 9, 99, 163, 1342, 1497
BspOI GCTAGC 1 cut(s) 455
BspPI GGATC 4 cut(s) 546, 1044, 1335, 1348
BspT104I TTCGAA 1 cut(s) 1054
BspTNI GGTCTC 1 cut(s) 185
BsrGI TGTACA 2 cut(s) 1134, 1602
BsrI ACTGG 1 cut(s) 99
BssECI CCNNGG 2 cut(s) 280, 1391
BssMI GATC 6 cut(s) 205, 505, 538, 902, 1036, 1340
BssNAI GTATAC 1 cut(s) 1074
BssSI CACGAG 1 cut(s) 983
BssT1I CCWWGG 1 cut(s) 1391
Bst1107I GTATAC 1 cut(s) 1074
Bst2BI CACGAG 1 cut(s) 983
Bst2UI CCWGG 2 cut(s) 282, 1228
Bst4CI ACNGT 5 cut(s) 74, 118, 878, 925, 1078
Bst6I CTCTTC 1 cut(s) 993
BstAUI TGTACA 2 cut(s) 1134, 1602
BstBI TTCGAA 1 cut(s) 1054
BstC8I GCNNGC 2 cut(s) 453, 1191
BstDEI CTNAG 6 cut(s) 397, 447, 465, 795, 1353, 1419
BstDSI CCRYGG 1 cut(s) 1391
BstF5I GGATG 5 cut(s) 1246, 1289, 1330, 1634, 1660
BstFNI CGCG 1 cut(s) 649
BstH2I RGCGCY 1 cut(s) 1190
BstHHI GCGC 2 cut(s) 651, 1189
BstKTI GATC 6 cut(s) 208, 508, 541, 905, 1039, 1343
BstMAI GTCTC 2 cut(s) 185, 1159
BstMBI GATC 6 cut(s) 205, 505, 538, 902, 1036, 1340
BstMWI GCNNNNNNNGC 5 cut(s) 452, 710, 719, 1253, 1409
BstNI CCWGG 2 cut(s) 282, 1228
BstNSI RCATGY 3 cut(s) 432, 1265, 1281
BstSCI CCNGG 3 cut(s) 157, 280, 1226
BstSFI CTRYAG 1 cut(s) 573
BstUI CGCG 1 cut(s) 649
BstV1I GCAGC 3 cut(s) 166, 731, 1293
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 1340
BstYI RGATCY 1 cut(s) 1340
BstZ17I GTATAC 1 cut(s) 1074
Bsu36I CCTNAGG 2 cut(s) 1353, 1419
BsuRI GGCC 3 cut(s) 45, 162, 1161
BtgI CCRYGG 1 cut(s) 1391
BtgZI GCGATG 1 cut(s) 352
BtsCI GGATG 5 cut(s) 1246, 1289, 1330, 1634, 1660
BtsI GCAGTG 1 cut(s) 1238
BtsIMutI CAGTG 3 cut(s) 70, 1083, 1238
Cac8I GCNNGC 2 cut(s) 453, 1191
CciI TCATGA 2 cut(s) 555, 1513
CfoI GCGC 2 cut(s) 651, 1189
Cfr13I GGNCC 5 cut(s) 97, 124, 161, 915, 1495
Csp6I GTAC 6 cut(s) 512, 1135, 1220, 1424, 1459, 1603
CviQI GTAC 6 cut(s) 512, 1135, 1220, 1424, 1459, 1603
DdeI CTNAG 6 cut(s) 397, 447, 465, 795, 1353, 1419
DpnI GATC 6 cut(s) 207, 507, 540, 904, 1038, 1342
DpnII GATC 6 cut(s) 205, 505, 538, 902, 1036, 1340
DraI TTTAAA 1 cut(s) 1216
DraIII CACNNNGTG 1 cut(s) 1625
DrdI GACNNNNNNGTC 1 cut(s) 199
DseDI GACNNNNNNGTC 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 1159
Eam1104I CTCTTC 1 cut(s) 993
EarI CTCTTC 1 cut(s) 993
Eco130I CCWWGG 1 cut(s) 1391
Eco24I GRGCYC 1 cut(s) 1391
Eco31I GGTCTC 1 cut(s) 185
Eco47I GGWCC 4 cut(s) 97, 124, 915, 1495
Eco57I CTGAAG 5 cut(s) 735, 975, 1017, 1553, 1654
Eco81I CCTNAGG 2 cut(s) 1353, 1419
EcoRII CCWGG 2 cut(s) 280, 1226
EcoT14I CCWWGG 1 cut(s) 1391
EcoT22I ATGCAT 1 cut(s) 1634
EcoT38I GRGCYC 1 cut(s) 1391
ErhI CCWWGG 1 cut(s) 1391
FalI AAGNNNNNCTT 2 cut(s) 1542, 1574
FaqI GGGAC 1 cut(s) 911
FauNDI CATATG 1 cut(s) 459
FbaI TGATCA 1 cut(s) 505
FblI GTMKAC 1 cut(s) 1073
Fnu4HI GCNGC 3 cut(s) 155, 720, 1282
FokI GGATG 5 cut(s) 1253, 1276, 1337, 1641, 1667
FriOI GRGCYC 1 cut(s) 1391
Fsp4HI GCNGC 3 cut(s) 155, 720, 1282
FspBI CTAG 3 cut(s) 252, 372, 452
GlaI GCGC 2 cut(s) 650, 1188
GluI GCNGC 3 cut(s) 155, 720, 1282
GsuI CTGGAG 1 cut(s) 1210
HaeII RGCGCY 1 cut(s) 1190
HaeIII GGCC 3 cut(s) 45, 162, 1161
HapII CCGG 2 cut(s) 159, 1162
HhaI GCGC 2 cut(s) 651, 1189
Hin6I GCGC 2 cut(s) 649, 1187
HinP1I GCGC 2 cut(s) 649, 1187
HincII GTYRAC 1 cut(s) 1314
HindII GTYRAC 1 cut(s) 1314
HindIII AAGCTT 1 cut(s) 1401
HinfI GANTC 8 cut(s) 263, 308, 362, 422, 803, 967, 1025, 1167
HpaI GTTAAC 1 cut(s) 1314
HpaII CCGG 2 cut(s) 159, 1162
HphI GGTGA 3 cut(s) 400, 1574, 1592
Hpy166II GTNNAC 6 cut(s) 426, 1074, 1222, 1314, 1556, 1603
Hpy188I TCNGA 9 cut(s) 7, 25, 205, 262, 268, 313, 466, 543, 708
Hpy188III TCNNGA 5 cut(s) 176, 524, 556, 913, 1514
Hpy8I GTNNAC 6 cut(s) 426, 1074, 1222, 1314, 1556, 1603
Hpy99I CGWCG 2 cut(s) 134, 137
HpyAV CCTTC 7 cut(s) 246, 346, 385, 561, 615, 1528, 1544
HpyCH4III ACNGT 5 cut(s) 74, 118, 878, 925, 1078
HpyCH4V TGCA 6 cut(s) 225, 338, 493, 694, 1281, 1632
HpyF10VI GCNNNNNNNGC 5 cut(s) 452, 710, 719, 1253, 1409
HpyF3I CTNAG 6 cut(s) 397, 447, 465, 795, 1353, 1419
HspAI GCGC 2 cut(s) 649, 1187
Ksp22I TGATCA 1 cut(s) 505
KspAI GTTAAC 1 cut(s) 1314
Kzo9I GATC 6 cut(s) 205, 505, 538, 902, 1036, 1340
LmnI GCTCC 1 cut(s) 7
Lsp1109I GCAGC 3 cut(s) 166, 731, 1293
LweI GCATC 3 cut(s) 433, 1619, 1641
MaeI CTAG 3 cut(s) 252, 372, 452
MaeIII GTNAC 1 cut(s) 1007
MalI GATC 6 cut(s) 207, 507, 540, 904, 1038, 1342
MboI GATC 6 cut(s) 205, 505, 538, 902, 1036, 1340
MfeI CAATTG 3 cut(s) 213, 894, 906
MflI RGATCY 1 cut(s) 1340
MhlI GDGCHC 2 cut(s) 273, 1391
MlyI GAGTC 3 cut(s) 257, 431, 1161
MmeI TCCRAC 2 cut(s) 85, 811
Mph1103I ATGCAT 1 cut(s) 1634
MspI CCGG 2 cut(s) 159, 1162
MspR9I CCNGG 3 cut(s) 159, 282, 1228
MunI CAATTG 3 cut(s) 213, 894, 906
MvaI CCWGG 2 cut(s) 282, 1228
MvnI CGCG 1 cut(s) 649
MwoI GCNNNNNNNGC 5 cut(s) 452, 710, 719, 1253, 1409
NciI CCSGG 1 cut(s) 159
NcoI CCATGG 1 cut(s) 1391
NdeI CATATG 1 cut(s) 459
NdeII GATC 6 cut(s) 205, 505, 538, 902, 1036, 1340
NheI GCTAGC 1 cut(s) 451
NlaIV GGNNCC 5 cut(s) 9, 99, 163, 1342, 1497
NsiI ATGCAT 1 cut(s) 1634
NspI RCATGY 3 cut(s) 432, 1265, 1281
NspV TTCGAA 1 cut(s) 1054
PacI TTAATTAA 1 cut(s) 1380
PagI TCATGA 2 cut(s) 555, 1513
PciI ACATGT 2 cut(s) 428, 1261
PfeI GAWTC 5 cut(s) 308, 362, 803, 967, 1025
PflFI GACNNNGTC 1 cut(s) 182
PkrI GCNGC 3 cut(s) 156, 721, 1283
PleI GAGTC 3 cut(s) 257, 430, 1161
PpsI GAGTC 3 cut(s) 257, 430, 1161
PscI ACATGT 2 cut(s) 428, 1261
PshBI ATTAAT 1 cut(s) 1113
Psp6I CCWGG 2 cut(s) 280, 1226
PspGI CCWGG 2 cut(s) 280, 1226
PspN4I GGNNCC 5 cut(s) 9, 99, 163, 1342, 1497
PspPI GGNCC 5 cut(s) 97, 124, 161, 915, 1495
PsuI RGATCY 1 cut(s) 1340
PsyI GACNNNGTC 1 cut(s) 182
RsaI GTAC 6 cut(s) 513, 1136, 1221, 1425, 1460, 1604
RsaNI GTAC 6 cut(s) 512, 1135, 1220, 1424, 1459, 1603
SatI GCNGC 3 cut(s) 155, 720, 1282
Sau3AI GATC 6 cut(s) 205, 505, 538, 902, 1036, 1340
Sau96I GGNCC 5 cut(s) 97, 124, 161, 915, 1495
SchI GAGTC 3 cut(s) 257, 431, 1161
ScrFI CCNGG 3 cut(s) 159, 282, 1228
SduI GDGCHC 2 cut(s) 273, 1391
SfaNI GCATC 3 cut(s) 433, 1619, 1641
SfcI CTRYAG 1 cut(s) 573
SfuI TTCGAA 1 cut(s) 1054
SinI GGWCC 4 cut(s) 97, 124, 915, 1495
SsiI CCGC 1 cut(s) 1256
SspMI CTAG 3 cut(s) 252, 372, 452
StyD4I CCNGG 3 cut(s) 157, 280, 1226
StyI CCWWGG 1 cut(s) 1391
TaaI ACNGT 5 cut(s) 74, 118, 878, 925, 1078
TaqI TCGA 3 cut(s) 129, 1054, 1650
TaqII GACCGA 1 cut(s) 1383
TatI WGTACW 3 cut(s) 1134, 1219, 1602
TfiI GAWTC 5 cut(s) 308, 362, 803, 967, 1025
TscAI CASTG 3 cut(s) 77, 1083, 1238
TseI GCWGC 3 cut(s) 154, 719, 1281
TspDTI ATGAA 9 cut(s) 42, 572, 606, 743, 1005, 1038, 1484, 1502, 1530
TspRI CASTG 3 cut(s) 77, 1083, 1238
Tth111I GACNNNGTC 1 cut(s) 182
VpaK11BI GGWCC 4 cut(s) 97, 124, 915, 1495
VspI ATTAAT 1 cut(s) 1113
XapI RAATTY 4 cut(s) 472, 838, 1372, 1523
XceI RCATGY 3 cut(s) 432, 1265, 1281
XcmI CCANNNNNNNNNTGG 1 cut(s) 1234
XmiI GTMKAC 1 cut(s) 1073
XspI CTAG 3 cut(s) 252, 372, 452
Zsp2I ATGCAT 1 cut(s) 1634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.