Prupe.1G550600_v2.0.a1

Crossover junction endonuclease

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
44990491 .. 45001765
11275 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G550600.1

Sequence Viewer

Length: 1746 bp
ATGTCGAATCATCAGCAGCCAATCGTCCTTTCCGACGAAGAAGAAGAAGAAAATGACCAGAATGCCCTCTCCTCACCTCCTCCATTCCAACCATTCCACTGCTCTAATAAGAAACGCCGAACCGAACTCTACCCCTACCCAAACCTCAATACTCAGACTCCGGTTCTCGTCCTTGACGACGACGACGACCCGACCAGACCGACACGGAAGCCACCGGGCCCCACCTCACCCCACTACTTCGAGGTCCTTGACGAGTCTCCATGCTCAAAAGCCCCTTCCGACTCCCAAGCAAGCGTTTCAGATTCCCCGATCAAGTTCTCCGGCATTAATGACTTGGTATTTCTGGAATCTGATAATGAGTCTGAAAGTAGTTCTGGAAGGGAAAGGGGGAAGGATAACAAATCAATTTCTAGTGGTTTTGGTGTGGCGAAGGGCTTAGATTGGAGTTCCAGATTTGTTGAATCCACATCTTCTCTTGGACATGACAGTCTAGCACATATGTCTGAGGACTGTTCTGCGCATCCTGTTTCTTTGCAAGATGCTTTTGATATTAATCAGGTACTTGATTATCCTACTGACAAAGAAAATAGAATGGATCAGATGGGCAACATTGTGAAACAGAGAAGAAAAACTAAAGCTATTACTGAAAAAAGTATTAGAGACGAAGCAATGGGTAGAAGGAAGATGGCGAAAGAGGAAAGGATACGCCTAATGGAAGAAAAGAATCTAAAGAAGCAACAAGAGAAGTTGCAAAGAGCAGCTCTGAAAGCTGAAGCAGCAGAGATGAAAAAGATTCAGAAAGAACAACAAAAGCGGGAAAAAGGAAAGTTTGCTGTGAAATCCATAGTGGCTGAGATTGACCTTAAAGTAGTGGAATTGGGGTCAGTTGGAGGAAATCTGCTTACAAGGTTTGCTGAAAGAGGGATCACATACCGTATAACATCAAATCCAATTGAAAGATCAATTGTCTGGACCATGACTGTTCCAGAACATATTTCGCAGAGTTCTCCTGAACGAATAGAGATTCAATATGTATTGCTCGTGTATGAAGCTGAAGAATTTTGTAACCTTGTCATCAATGAATCTCTCTTGGACCATGTTTTTAGTGTTCGAAGTCGTTATCCATCCTCTACAGTGTGTTATCTTACAAATAGGTTGATGGCATATATTAATAAAAGGGAACAAGAAGTGTACAAGAACCTAACAAAGGATAATGATTGGAGACGCCCGCCTGTTGAGGAGGTGCTGGCAAAATTGACCACTAATTTTTTTAAAGTACATTCCAGGCAGTGCATAGATGAGGCTGAACTTGCTGAACACATTGTTGGTTTGACGTGCAGCCTCTCATCCTGCCAATTTAGAAAGAAGTTAACGAGACTGGACGTAAATGCTAATGGACCTCTTATGATTAAGGACTGTGTTGACCGGAATATAATTAATAAGAGCGCATGGTTAAAAGCTTTGGTAGCTATCCCAAAGGTACAGCCACGGTTTGCTATTGCTATATGGAAGAAGTACGCTACCATGAAATCTCTGTTGAGTGTTTACATGGATCAAAATGTATCGGTTCATCAAAAGGAATTTCTGCTGAAGGACCTGGTAACTGAAGGTTTACTTCGCGATGACAGAAGAGTGGGTGAGGTTTGTTCCAAGAGAGTGTACAGAATACTTATGGCACAAAGTGGATCCATTAAAACTGATGATGTTGAGGATGGTGCTGATTTGTTTAGGCGTCAACTGGATTAA

Protein Analysis

582

Amino Acids

66.24

Weight (kDa)

6.86

Isoelectric Point (pI)

54.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 486
Acc16I TGCGCA 1 cut(s) 519
AccII CGCG 1 cut(s) 1620
AciI CCGC 2 cut(s) 814, 1229
AclWI GGATC 5 cut(s) 603, 932, 1560, 1680, 1693
AcsI RAATTY 2 cut(s) 1058, 1580
AcuI CTGAAG 4 cut(s) 792, 1074, 1610, 1626
AcyI GRCGYC 2 cut(s) 1225, 1732
AdeI CACNNNGTG 1 cut(s) 1682
AfaI GTAC 6 cut(s) 561, 1193, 1278, 1482, 1517, 1661
AfiI CCNNNNNNNGG 1 cut(s) 1207
AgsI TTSAA 3 cut(s) 461, 956, 1028
AjiI CACGTC 1 cut(s) 1335
AjnI CCWGG 2 cut(s) 1283, 1596
AjuI GAANNNNNNNTTGG 4 cut(s) 13, 45, 1308, 1340
AluBI AGCT 6 cut(s) 638, 761, 770, 1052, 1460, 1469
AluI AGCT 6 cut(s) 638, 761, 770, 1052, 1460, 1469
Alw26I GTCTC 4 cut(s) 261, 654, 1216, 1369
AlwI GGATC 5 cut(s) 603, 932, 1560, 1680, 1693
AoxI GGCC 1 cut(s) 217
ApaI GGGCCC 1 cut(s) 221
ApeKI GCWGC 4 cut(s) 16, 758, 776, 1338
ApoI RAATTY 2 cut(s) 1058, 1580
AseI ATTAAT 4 cut(s) 327, 552, 1170, 1437
AspLEI GCGC 2 cut(s) 520, 1448
AspS9I GGNCC 7 cut(s) 217, 218, 244, 972, 1093, 1397, 1594
AsuC2I CCSGG 1 cut(s) 216
AsuHPI GGTGA 3 cut(s) 66, 219, 1649
AsuII TTCGAA 1 cut(s) 1111
AvaII GGWCC 5 cut(s) 244, 972, 1093, 1397, 1594
BaeGI GKGCMC 1 cut(s) 221
BamHI GGATCC 1 cut(s) 1685
BanII GRGCYC 1 cut(s) 221
BauI CACGAG 1 cut(s) 1040
BbvI GCAGC 4 cut(s) 28, 770, 788, 1350
BccI CCATC 5 cut(s) 595, 679, 1132, 1153, 1706
BciT130I CCWGG 2 cut(s) 1285, 1598
BciVI GTATCC 1 cut(s) 696
BcnI CCSGG 1 cut(s) 216
BcoDI GTCTC 4 cut(s) 261, 654, 1216, 1369
BfaI CTAG 2 cut(s) 411, 491
BfmI CTRYAG 1 cut(s) 1131
BfuI GTATCC 1 cut(s) 696
BisI GCNGC 4 cut(s) 17, 759, 777, 1339
BlsI GCNGC 4 cut(s) 18, 760, 778, 1340
Bme1390I CCNGG 3 cut(s) 216, 1285, 1598
Bme18I GGWCC 5 cut(s) 244, 972, 1093, 1397, 1594
BmgBI CACGTC 1 cut(s) 1335
BmgT120I GGNCC 7 cut(s) 217, 218, 244, 972, 1093, 1397, 1594
BmiI GGNNCC 3 cut(s) 219, 220, 1687
BmrFI CCNGG 3 cut(s) 216, 1285, 1598
BmsI GCATC 2 cut(s) 529, 529
Bpu14I TTCGAA 1 cut(s) 1111
BpuMI CCSGG 1 cut(s) 216
BsaBI GATNNNNATC 1 cut(s) 552
BsaHI GRCGYC 2 cut(s) 1225, 1732
BsaJI CCNNGG 1 cut(s) 1487
BsaWI WCCGGW 2 cut(s) 160, 1425
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 1 cut(s) 1207
Bse1I ACTGG 2 cut(s) 1383, 1743
Bse3DI GCAATG 1 cut(s) 675
Bse8I GATNNNNATC 1 cut(s) 552
BseBI CCWGG 2 cut(s) 1285, 1598
BseDI CCNNGG 1 cut(s) 1487
BseGI GGATG 4 cut(s) 520, 1124, 1346, 1717
BseJI GATNNNNATC 1 cut(s) 552
BseLI CCNNNNNNNGG 1 cut(s) 1207
BseMI GCAATG 1 cut(s) 675
BseMII CTCAG 3 cut(s) 167, 495, 843
BseNI ACTGG 2 cut(s) 1383, 1743
BseRI GAGGAG 3 cut(s) 61, 69, 1253
BseSI GKGCMC 1 cut(s) 221
BseXI GCAGC 4 cut(s) 28, 770, 788, 1350
BsgI GTGCAG 1 cut(s) 1357
Bsh1236I CGCG 1 cut(s) 1620
BshFI GGCC 1 cut(s) 219
BsiSI CCGG 4 cut(s) 161, 215, 321, 1426
BslI CCNNNNNNNGG 1 cut(s) 1207
BsmAI GTCTC 4 cut(s) 261, 654, 1216, 1369
BsmBI CGTCTC 2 cut(s) 654, 1216
BsmI GAATGC 1 cut(s) 67
BsnI GGCC 1 cut(s) 219
Bsp119I TTCGAA 1 cut(s) 1111
Bsp120I GGGCCC 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 221
Bsp1407I TGTACA 2 cut(s) 1191, 1659
Bsp143I GATC 6 cut(s) 309, 595, 924, 959, 1552, 1685
Bsp68I TCGCGA 1 cut(s) 1620
BspACI CCGC 2 cut(s) 814, 1229
BspANI GGCC 1 cut(s) 219
BspCNI CTCAG 3 cut(s) 166, 496, 844
BspFNI CGCG 1 cut(s) 1620
BspLI GGNNCC 3 cut(s) 219, 220, 1687
BspPI GGATC 5 cut(s) 603, 932, 1560, 1680, 1693
BspT104I TTCGAA 1 cut(s) 1111
BsrDI GCAATG 1 cut(s) 675
BsrGI TGTACA 2 cut(s) 1191, 1659
BsrI ACTGG 2 cut(s) 1383, 1743
BssECI CCNNGG 1 cut(s) 1487
BssMI GATC 6 cut(s) 309, 595, 924, 959, 1552, 1685
BssNI GRCGYC 2 cut(s) 1225, 1732
BssSI CACGAG 1 cut(s) 1040
Bst2BI CACGAG 1 cut(s) 1040
Bst2UI CCWGG 2 cut(s) 1285, 1598
Bst4CI ACNGT 7 cut(s) 488, 512, 935, 982, 1135, 1418, 1491
Bst6I CTCTTC 1 cut(s) 1624
BstACI GRCGYC 2 cut(s) 1225, 1732
BstAUI TGTACA 2 cut(s) 1191, 1659
BstBI TTCGAA 1 cut(s) 1111
BstC8I GCNNGC 3 cut(s) 292, 1229, 1248
BstDEI CTNAG 4 cut(s) 153, 436, 504, 852
BstDSI CCRYGG 1 cut(s) 1487
BstENI CCTNNNNNAGG 1 cut(s) 1205
BstF5I GGATG 4 cut(s) 520, 1124, 1346, 1717
BstFNI CGCG 1 cut(s) 1620
BstHHI GCGC 2 cut(s) 520, 1448
BstKTI GATC 6 cut(s) 312, 598, 927, 962, 1555, 1688
BstMAI GTCTC 4 cut(s) 261, 654, 1216, 1369
BstMBI GATC 6 cut(s) 309, 595, 924, 959, 1552, 1685
BstMWI GCNNNNNNNGC 4 cut(s) 767, 776, 1310, 1466
BstNI CCWGG 2 cut(s) 1285, 1598
BstSCI CCNGG 3 cut(s) 214, 1283, 1596
BstSFI CTRYAG 1 cut(s) 1131
BstSLI GKGCMC 1 cut(s) 221
BstUI CGCG 1 cut(s) 1620
BstV1I GCAGC 4 cut(s) 28, 770, 788, 1350
BstX2I RGATCY 1 cut(s) 1685
BstYI RGATCY 1 cut(s) 1685
BsuI GTATCC 1 cut(s) 696
BsuRI GGCC 1 cut(s) 219
BtgI CCRYGG 1 cut(s) 1487
BtgZI GCGATG 1 cut(s) 1635
BtrI CACGTC 1 cut(s) 1335
BtsCI GGATG 4 cut(s) 520, 1124, 1346, 1717
BtsI GCAGTG 2 cut(s) 97, 1295
BtsIMutI CAGTG 3 cut(s) 97, 1140, 1295
BtuMI TCGCGA 1 cut(s) 1620
Cac8I GCNNGC 3 cut(s) 292, 1229, 1248
CfoI GCGC 2 cut(s) 520, 1448
Cfr13I GGNCC 7 cut(s) 217, 218, 244, 972, 1093, 1397, 1594
CseI GACGC 2 cut(s) 1233, 1721
CsiI ACCWGGT 1 cut(s) 1596
Csp6I GTAC 6 cut(s) 560, 1192, 1277, 1481, 1516, 1660
CviAII CATG 7 cut(s) 261, 482, 976, 1097, 1449, 1525, 1549
CviQI GTAC 6 cut(s) 560, 1192, 1277, 1481, 1516, 1660
DdeI CTNAG 4 cut(s) 153, 436, 504, 852
DpnI GATC 6 cut(s) 311, 597, 926, 961, 1554, 1687
DpnII GATC 6 cut(s) 309, 595, 924, 959, 1552, 1685
DraI TTTAAA 1 cut(s) 1273
DraIII CACNNNGTG 1 cut(s) 1682
DrdI GACNNNNNNGTC 1 cut(s) 486
DseDI GACNNNNNNGTC 1 cut(s) 486
Eam1104I CTCTTC 1 cut(s) 1624
EarI CTCTTC 1 cut(s) 1624
Eco24I GRGCYC 1 cut(s) 221
Eco47I GGWCC 5 cut(s) 244, 972, 1093, 1397, 1594
Eco57I CTGAAG 4 cut(s) 792, 1074, 1610, 1626
EcoNI CCTNNNNNAGG 1 cut(s) 1205
EcoO109I RGGNCCY 3 cut(s) 218, 244, 1594
EcoRII CCWGG 2 cut(s) 1283, 1596
EcoT38I GRGCYC 1 cut(s) 221
Esp3I CGTCTC 2 cut(s) 654, 1216
FaeI CATG 7 cut(s) 264, 485, 979, 1100, 1452, 1528, 1552
FalI AAGNNNNNCTT 2 cut(s) 1599, 1631
FatI CATG 7 cut(s) 260, 481, 975, 1096, 1448, 1524, 1548
FauI CCCGC 2 cut(s) 807, 1236
FauNDI CATATG 1 cut(s) 498
Fnu4HI GCNGC 4 cut(s) 17, 759, 777, 1339
FokI GGATG 4 cut(s) 507, 1111, 1333, 1724
FriOI GRGCYC 1 cut(s) 221
Fsp4HI GCNGC 4 cut(s) 17, 759, 777, 1339
FspBI CTAG 2 cut(s) 411, 491
FspI TGCGCA 1 cut(s) 519
GlaI GCGC 2 cut(s) 519, 1447
GluI GCNGC 4 cut(s) 17, 759, 777, 1339
HaeIII GGCC 1 cut(s) 219
HapII CCGG 4 cut(s) 161, 215, 321, 1426
HgaI GACGC 2 cut(s) 1233, 1721
HhaI GCGC 2 cut(s) 520, 1448
Hin1I GRCGYC 2 cut(s) 1225, 1732
Hin1II CATG 7 cut(s) 264, 485, 979, 1100, 1452, 1528, 1552
Hin6I GCGC 2 cut(s) 518, 1446
HinP1I GCGC 2 cut(s) 518, 1446
HincII GTYRAC 3 cut(s) 1371, 1423, 1736
HindII GTYRAC 3 cut(s) 1371, 1423, 1736
HindIII AAGCTT 1 cut(s) 1458
HpaI GTTAAC 1 cut(s) 1371
HpaII CCGG 4 cut(s) 161, 215, 321, 1426
HphI GGTGA 3 cut(s) 66, 219, 1649
Hpy166II GTNNAC 7 cut(s) 1192, 1371, 1423, 1546, 1613, 1660, 1736
Hpy188III TCNNGA 7 cut(s) 344, 375, 450, 970, 986, 1010, 1619
Hpy8I GTNNAC 7 cut(s) 1192, 1371, 1423, 1546, 1613, 1660, 1736
Hpy99I CGWCG 4 cut(s) 38, 182, 185, 188
HpyAV CCTTC 7 cut(s) 285, 372, 385, 424, 672, 1585, 1601
HpyCH4III ACNGT 7 cut(s) 488, 512, 935, 982, 1135, 1418, 1491
HpyCH4IV ACGT 2 cut(s) 1334, 1383
HpyCH4V TGCA 4 cut(s) 535, 751, 1293, 1338
HpyF10VI GCNNNNNNNGC 4 cut(s) 767, 776, 1310, 1466
HpyF3I CTNAG 4 cut(s) 153, 436, 504, 852
HpySE526I ACGT 2 cut(s) 1334, 1383
Hsp92I GRCGYC 2 cut(s) 1225, 1732
Hsp92II CATG 7 cut(s) 264, 485, 979, 1100, 1452, 1528, 1552
HspAI GCGC 2 cut(s) 518, 1446
KspAI GTTAAC 1 cut(s) 1371
Kzo9I GATC 6 cut(s) 309, 595, 924, 959, 1552, 1685
Lsp1109I GCAGC 4 cut(s) 28, 770, 788, 1350
LweI GCATC 2 cut(s) 529, 529
MabI ACCWGGT 1 cut(s) 1596
MaeI CTAG 2 cut(s) 411, 491
MaeII ACGT 2 cut(s) 1334, 1383
MaeIII GTNAC 2 cut(s) 1064, 1600
MalI GATC 6 cut(s) 311, 597, 926, 961, 1554, 1687
MboI GATC 6 cut(s) 309, 595, 924, 959, 1552, 1685
MfeI CAATTG 2 cut(s) 951, 963
MflI RGATCY 1 cut(s) 1685
MhlI GDGCHC 1 cut(s) 221
MlyI GAGTC 4 cut(s) 151, 263, 275, 368
MmeI TCCRAC 4 cut(s) 57, 112, 303, 868
MspI CCGG 4 cut(s) 161, 215, 321, 1426
MspR9I CCNGG 3 cut(s) 216, 1285, 1598
MunI CAATTG 2 cut(s) 951, 963
Mva1269I GAATGC 1 cut(s) 67
MvaI CCWGG 2 cut(s) 1285, 1598
MvnI CGCG 1 cut(s) 1620
MwoI GCNNNNNNNGC 4 cut(s) 767, 776, 1310, 1466
NciI CCSGG 1 cut(s) 216
NdeI CATATG 1 cut(s) 498
NdeII GATC 6 cut(s) 309, 595, 924, 959, 1552, 1685
NlaIII CATG 7 cut(s) 264, 485, 979, 1100, 1452, 1528, 1552
NlaIV GGNNCC 3 cut(s) 219, 220, 1687
NruI TCGCGA 1 cut(s) 1620
NsbI TGCGCA 1 cut(s) 519
NspV TTCGAA 1 cut(s) 1111
PcsI WCGNNNNNNNCGW 3 cut(s) 30, 174, 183
PctI GAATGC 1 cut(s) 67
PfeI GAWTC 8 cut(s) 7, 302, 347, 461, 724, 793, 1024, 1082
PkrI GCNGC 4 cut(s) 18, 760, 778, 1340
PleI GAGTC 4 cut(s) 151, 262, 275, 367
PpsI GAGTC 4 cut(s) 151, 262, 275, 367
PpuMI RGGWCCY 2 cut(s) 244, 1594
PshBI ATTAAT 4 cut(s) 327, 552, 1170, 1437
Psp5II RGGWCCY 2 cut(s) 244, 1594
Psp6I CCWGG 2 cut(s) 1283, 1596
PspGI CCWGG 2 cut(s) 1283, 1596
PspN4I GGNNCC 3 cut(s) 219, 220, 1687
PspOMI GGGCCC 1 cut(s) 217
PspPI GGNCC 7 cut(s) 217, 218, 244, 972, 1093, 1397, 1594
PspPPI RGGWCCY 2 cut(s) 244, 1594
PsuI RGATCY 1 cut(s) 1685
RruI TCGCGA 1 cut(s) 1620
RsaI GTAC 6 cut(s) 561, 1193, 1278, 1482, 1517, 1661
RsaNI GTAC 6 cut(s) 560, 1192, 1277, 1481, 1516, 1660
SatI GCNGC 4 cut(s) 17, 759, 777, 1339
Sau3AI GATC 6 cut(s) 309, 595, 924, 959, 1552, 1685
Sau96I GGNCC 7 cut(s) 217, 218, 244, 972, 1093, 1397, 1594
SchI GAGTC 4 cut(s) 151, 263, 275, 368
ScrFI CCNGG 3 cut(s) 216, 1285, 1598
SduI GDGCHC 1 cut(s) 221
SexAI ACCWGGT 1 cut(s) 1596
SfaNI GCATC 2 cut(s) 529, 529
SfcI CTRYAG 1 cut(s) 1131
SfuI TTCGAA 1 cut(s) 1111
SinI GGWCC 5 cut(s) 244, 972, 1093, 1397, 1594
SsiI CCGC 2 cut(s) 814, 1229
SspMI CTAG 2 cut(s) 411, 491
StyD4I CCNGG 3 cut(s) 214, 1283, 1596
TaaI ACNGT 7 cut(s) 488, 512, 935, 982, 1135, 1418, 1491
TaiI ACGT 2 cut(s) 1337, 1386
TaqI TCGA 3 cut(s) 5, 240, 1111
TaqII GACCGA 1 cut(s) 214
TatI WGTACW 3 cut(s) 1191, 1276, 1659
TfiI GAWTC 8 cut(s) 7, 302, 347, 461, 724, 793, 1024, 1082
TscAI CASTG 3 cut(s) 104, 1140, 1295
TseI GCWGC 4 cut(s) 16, 758, 776, 1338
TspDTI ATGAA 5 cut(s) 800, 1062, 1095, 1541, 1559
TspGWI ACGGA 1 cut(s) 220
TspRI CASTG 3 cut(s) 104, 1140, 1295
VpaK11BI GGWCC 5 cut(s) 244, 972, 1093, 1397, 1594
VspI ATTAAT 4 cut(s) 327, 552, 1170, 1437
XagI CCTNNNNNAGG 1 cut(s) 1205
XapI RAATTY 2 cut(s) 1058, 1580
XspI CTAG 2 cut(s) 411, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.