Crossover junction endonuclease
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G21800 AT2G21800 AT2G21800 AT2G22140 AT2G22140 |
| fragaria_vesca | FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_5g31350 FvH4_5g31350 |
| malus_domestica | MD15G1335700.v1.1 MD15G1404100.v1.1 |
| prunus_persica | Prupe.1G550600_v2.0.a1 Prupe.1G550600_v2.0.a1 Prupe.1G550600_v2.0.a1 Prupe.6G166800_v2.0.a1 |
| pyrus_communis | pycom15g28970 |
| rosa_chinensis | RchiOBHm_Chr2g0117911 RchiOBHm_Chr7g0226601 RchiOBHm_Chr7g0226611 RchiOBHm_Chr7g0228631 |
| rosa_laevigata | RLG00000001714 RLG00000018383 |
| rosa_multiflora | Rmu_sc0001423.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00126110 Rroxscaffold_3G00230990 Rroxscaffold_3G00232670 |
| rosa_rugosa | Rorug02G0214800 Rorug02G0214900 Rorug02G0214900 Rorug07G0238500 Rorug07G0238600 |
| rosa_samantha | Rh2AG271200 Rh2BG282800 Rh2DG279100 Rh2DG297000 Rh7AG386100 Rh7AG403200 Rh7BG372700 Rh7BG372800 Rh7CG405400 Rh7CG422500 Rh7DG384700 |
| rosa_wichuraiana | Rw2G021450 Rw7G032410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 91 |
| AccIII | TCCGGA | 1 cut(s) | 467 |
| AclWI | GGATC | 4 cut(s) | 189, 478, 981, 994 |
| AcoI | YGGCCR | 2 cut(s) | 21, 787 |
| AcsI | RAATTY | 2 cut(s) | 841, 1169 |
| AcuI | CTGAAG | 2 cut(s) | 381, 663 |
| AdeI | CACNNNGTG | 1 cut(s) | 1271 |
| AfaI | GTAC | 5 cut(s) | 150, 782, 867, 1158, 1250 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 510 |
| AflIII | ACRYGT | 3 cut(s) | 685, 907, 923 |
| AgsI | TTSAA | 8 cut(s) | 114, 329, 464, 545, 617, 701, 827, 1117 |
| AjnI | CCWGG | 2 cut(s) | 598, 872 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 897, 929 |
| AleI | CACNNNNGTG | 1 cut(s) | 810 |
| Alw21I | GWGCWC | 1 cut(s) | 1037 |
| Alw26I | GTCTC | 2 cut(s) | 196, 1125 |
| AlwI | GGATC | 4 cut(s) | 189, 478, 981, 994 |
| Aor13HI | TCCGGA | 1 cut(s) | 467 |
| AoxI | GGCC | 3 cut(s) | 21, 787, 793 |
| ApeKI | GCWGC | 4 cut(s) | 105, 365, 1072, 1275 |
| ApoI | RAATTY | 2 cut(s) | 841, 1169 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 675 |
| AspLEI | GCGC | 2 cut(s) | 91, 93 |
| AspS9I | GGNCC | 2 cut(s) | 793, 1141 |
| AsuC2I | CCSGG | 2 cut(s) | 681, 791 |
| AsuHPI | GGTGA | 2 cut(s) | 1223, 1238 |
| AvaII | GGWCC | 1 cut(s) | 1141 |
| BalI | TGGCCA | 1 cut(s) | 23 |
| BamHI | GGATCC | 1 cut(s) | 986 |
| BanII | GRGCYC | 1 cut(s) | 1037 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 475, 507 |
| Bbv12I | GWGCWC | 1 cut(s) | 1037 |
| BbvI | GCAGC | 4 cut(s) | 117, 352, 1084, 1262 |
| BccI | CCATC | 4 cut(s) | 295, 440, 721, 1295 |
| BceAI | ACGGC | 1 cut(s) | 780 |
| BciT130I | CCWGG | 2 cut(s) | 600, 874 |
| BciVI | GTATCC | 1 cut(s) | 1116 |
| BclI | TGATCA | 1 cut(s) | 142 |
| BcnI | CCSGG | 2 cut(s) | 681, 791 |
| BcoDI | GTCTC | 2 cut(s) | 196, 1125 |
| BfaI | CTAG | 3 cut(s) | 810, 852, 963 |
| BfmI | CTRYAG | 2 cut(s) | 219, 366 |
| BfuI | GTATCC | 1 cut(s) | 1116 |
| BisI | GCNGC | 4 cut(s) | 106, 366, 1073, 1276 |
| BlsI | GCNGC | 4 cut(s) | 107, 367, 1074, 1277 |
| Bme1390I | CCNGG | 4 cut(s) | 600, 681, 791, 874 |
| Bme18I | GGWCC | 1 cut(s) | 1141 |
| BmgT120I | GGNCC | 2 cut(s) | 793, 1141 |
| BmiI | GGNNCC | 3 cut(s) | 794, 988, 1143 |
| BmrFI | CCNGG | 4 cut(s) | 600, 681, 791, 874 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 92, 124 |
| BpmI | CTGGAG | 1 cut(s) | 621 |
| Bpu10I | CCTNAGC | 1 cut(s) | 398 |
| BpuEI | CTTGAG | 3 cut(s) | 119, 712, 1163 |
| BpuMI | CCSGG | 2 cut(s) | 681, 791 |
| BsaBI | GATNNNNATC | 1 cut(s) | 141 |
| BsaI | GGTCTC | 1 cut(s) | 196 |
| BsaJI | CCNNGG | 2 cut(s) | 24, 790 |
| BsaWI | WCCGGW | 1 cut(s) | 467 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 31, 61 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 510 |
| Bse118I | RCCGGY | 1 cut(s) | 1014 |
| Bse8I | GATNNNNATC | 1 cut(s) | 141 |
| BseAI | TCCGGA | 1 cut(s) | 467 |
| BseBI | CCWGG | 2 cut(s) | 600, 874 |
| BseDI | CCNNGG | 2 cut(s) | 24, 790 |
| BseGI | GGATG | 3 cut(s) | 139, 935, 1306 |
| BseJI | GATNNNNATC | 1 cut(s) | 141 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 510 |
| BseMII | CTCAG | 2 cut(s) | 72, 432 |
| BsePI | GCGCGC | 1 cut(s) | 89 |
| BseRI | GAGGAG | 1 cut(s) | 618 |
| BseXI | GCAGC | 4 cut(s) | 117, 352, 1084, 1262 |
| BseYI | CCCAGC | 1 cut(s) | 4 |
| BsgI | GTGCAG | 4 cut(s) | 51, 1091, 1261, 1326 |
| Bsh1236I | CGCG | 1 cut(s) | 91 |
| BshFI | GGCC | 3 cut(s) | 23, 789, 795 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1037 |
| BsiSI | CCGG | 4 cut(s) | 468, 680, 790, 1015 |
| BslFI | GGGAC | 2 cut(s) | 696, 816 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 510 |
| BsmAI | GTCTC | 2 cut(s) | 196, 1125 |
| BsmFI | GGGAC | 2 cut(s) | 696, 816 |
| BsnI | GGCC | 3 cut(s) | 23, 789, 795 |
| Bso31I | GGTCTC | 1 cut(s) | 196 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1037 |
| Bsp13I | TCCGGA | 1 cut(s) | 467 |
| Bsp1407I | TGTACA | 2 cut(s) | 780, 1248 |
| Bsp143I | GATC | 5 cut(s) | 142, 181, 470, 548, 986 |
| BspANI | GGCC | 3 cut(s) | 23, 789, 795 |
| BspCNI | CTCAG | 2 cut(s) | 73, 433 |
| BspEI | TCCGGA | 1 cut(s) | 467 |
| BspFNI | CGCG | 1 cut(s) | 91 |
| BspLI | GGNNCC | 3 cut(s) | 794, 988, 1143 |
| BspMAI | CTGCAG | 1 cut(s) | 370 |
| BspPI | GGATC | 4 cut(s) | 189, 478, 981, 994 |
| BspQI | GCTCTTC | 1 cut(s) | 115 |
| BspTNI | GGTCTC | 1 cut(s) | 196 |
| BsrFI | RCCGGY | 1 cut(s) | 1014 |
| BsrGI | TGTACA | 2 cut(s) | 780, 1248 |
| BssAI | RCCGGY | 1 cut(s) | 1014 |
| BssECI | CCNNGG | 2 cut(s) | 24, 790 |
| BssHII | GCGCGC | 1 cut(s) | 89 |
| BssMI | GATC | 5 cut(s) | 142, 181, 470, 548, 986 |
| BssT1I | CCWWGG | 1 cut(s) | 24 |
| Bst2UI | CCWGG | 2 cut(s) | 600, 874 |
| Bst4CI | ACNGT | 3 cut(s) | 524, 571, 724 |
| Bst6I | CTCTTC | 3 cut(s) | 115, 324, 681 |
| BstAUI | TGTACA | 2 cut(s) | 780, 1248 |
| BstC8I | GCNNGC | 3 cut(s) | 87, 91, 95 |
| BstDEI | CTNAG | 3 cut(s) | 81, 398, 441 |
| BstF5I | GGATG | 3 cut(s) | 139, 935, 1306 |
| BstFNI | CGCG | 1 cut(s) | 91 |
| BstHHI | GCGC | 2 cut(s) | 91, 93 |
| BstKTI | GATC | 5 cut(s) | 145, 184, 473, 551, 989 |
| BstMAI | GTCTC | 2 cut(s) | 196, 1125 |
| BstMBI | GATC | 5 cut(s) | 142, 181, 470, 548, 986 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 322, 356, 365, 899, 1055 |
| BstNI | CCWGG | 2 cut(s) | 600, 874 |
| BstNSI | RCATGY | 3 cut(s) | 689, 911, 927 |
| BstSCI | CCNGG | 4 cut(s) | 598, 679, 789, 872 |
| BstSFI | CTRYAG | 2 cut(s) | 219, 366 |
| BstUI | CGCG | 1 cut(s) | 91 |
| BstV1I | GCAGC | 4 cut(s) | 117, 352, 1084, 1262 |
| BstX2I | RGATCY | 1 cut(s) | 986 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 31 |
| BstYI | RGATCY | 1 cut(s) | 986 |
| BsuI | GTATCC | 1 cut(s) | 1116 |
| BsuRI | GGCC | 3 cut(s) | 23, 789, 795 |
| BtsCI | GGATG | 3 cut(s) | 139, 935, 1306 |
| BtsI | GCAGTG | 1 cut(s) | 884 |
| BtsIMutI | CAGTG | 2 cut(s) | 729, 884 |
| Cac8I | GCNNGC | 3 cut(s) | 87, 91, 95 |
| CfoI | GCGC | 2 cut(s) | 91, 93 |
| Cfr10I | RCCGGY | 1 cut(s) | 1014 |
| Cfr13I | GGNCC | 2 cut(s) | 793, 1141 |
| Csp6I | GTAC | 5 cut(s) | 149, 781, 866, 1157, 1249 |
| CviAII | CATG | 7 cut(s) | 686, 908, 924, 1038, 1138, 1160, 1261 |
| CviQI | GTAC | 5 cut(s) | 149, 781, 866, 1157, 1249 |
| DdeI | CTNAG | 3 cut(s) | 81, 398, 441 |
| DpnI | GATC | 5 cut(s) | 144, 183, 472, 550, 988 |
| DpnII | GATC | 5 cut(s) | 142, 181, 470, 548, 986 |
| DraIII | CACNNNGTG | 1 cut(s) | 1271 |
| EaeI | YGGCCR | 2 cut(s) | 21, 787 |
| Eam1104I | CTCTTC | 3 cut(s) | 115, 324, 681 |
| EarI | CTCTTC | 3 cut(s) | 115, 324, 681 |
| Ecl136II | GAGCTC | 1 cut(s) | 1035 |
| Eco130I | CCWWGG | 1 cut(s) | 24 |
| Eco24I | GRGCYC | 1 cut(s) | 1037 |
| Eco31I | GGTCTC | 1 cut(s) | 196 |
| Eco47I | GGWCC | 1 cut(s) | 1141 |
| Eco53kI | GAGCTC | 1 cut(s) | 1035 |
| Eco57I | CTGAAG | 2 cut(s) | 381, 663 |
| EcoICRI | GAGCTC | 1 cut(s) | 1035 |
| EcoRII | CCWGG | 2 cut(s) | 598, 872 |
| EcoT14I | CCWWGG | 1 cut(s) | 24 |
| EcoT38I | GRGCYC | 1 cut(s) | 1037 |
| ErhI | CCWWGG | 1 cut(s) | 24 |
| FaeI | CATG | 7 cut(s) | 689, 911, 927, 1041, 1141, 1163, 1264 |
| FaqI | GGGAC | 2 cut(s) | 696, 816 |
| FatI | CATG | 7 cut(s) | 685, 907, 923, 1037, 1137, 1159, 1260 |
| FauNDI | CATATG | 1 cut(s) | 754 |
| FbaI | TGATCA | 1 cut(s) | 142 |
| Fnu4HI | GCNGC | 4 cut(s) | 106, 366, 1073, 1276 |
| FokI | GGATG | 3 cut(s) | 146, 922, 1313 |
| FriOI | GRGCYC | 1 cut(s) | 1037 |
| Fsp4HI | GCNGC | 4 cut(s) | 106, 366, 1073, 1276 |
| FspBI | CTAG | 3 cut(s) | 810, 852, 963 |
| GlaI | GCGC | 2 cut(s) | 90, 92 |
| GluI | GCNGC | 4 cut(s) | 106, 366, 1073, 1276 |
| GsaI | CCCAGC | 1 cut(s) | 8 |
| GsuI | CTGGAG | 1 cut(s) | 621 |
| HaeIII | GGCC | 3 cut(s) | 23, 789, 795 |
| HapII | CCGG | 4 cut(s) | 468, 680, 790, 1015 |
| HhaI | GCGC | 2 cut(s) | 91, 93 |
| Hin1II | CATG | 7 cut(s) | 689, 911, 927, 1041, 1141, 1163, 1264 |
| Hin6I | GCGC | 2 cut(s) | 89, 91 |
| HinP1I | GCGC | 2 cut(s) | 89, 91 |
| HincII | GTYRAC | 3 cut(s) | 516, 817, 960 |
| HindII | GTYRAC | 3 cut(s) | 516, 817, 960 |
| HindIII | AAGCTT | 1 cut(s) | 323 |
| HinfI | GANTC | 7 cut(s) | 40, 56, 215, 449, 464, 613, 671 |
| HpaI | GTTAAC | 2 cut(s) | 516, 960 |
| HpaII | CCGG | 4 cut(s) | 468, 680, 790, 1015 |
| HphI | GGTGA | 2 cut(s) | 1223, 1238 |
| Hpy166II | GTNNAC | 7 cut(s) | 516, 656, 817, 960, 1135, 1202, 1249 |
| Hpy188I | TCNGA | 3 cut(s) | 45, 82, 354 |
| Hpy188III | TCNNGA | 8 cut(s) | 161, 468, 559, 575, 691, 949, 997, 1063 |
| Hpy8I | GTNNAC | 7 cut(s) | 516, 656, 817, 960, 1135, 1202, 1249 |
| HpyAV | CCTTC | 4 cut(s) | 764, 994, 1060, 1190 |
| HpyCH4III | ACNGT | 3 cut(s) | 524, 571, 724 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 322, 356, 365, 899, 1055 |
| HpyF3I | CTNAG | 3 cut(s) | 81, 398, 441 |
| Hsp92II | CATG | 7 cut(s) | 689, 911, 927, 1041, 1141, 1163, 1264 |
| HspAI | GCGC | 2 cut(s) | 89, 91 |
| Kpn2I | TCCGGA | 1 cut(s) | 467 |
| Ksp22I | TGATCA | 1 cut(s) | 142 |
| KspAI | GTTAAC | 2 cut(s) | 516, 960 |
| Kzo9I | GATC | 5 cut(s) | 142, 181, 470, 548, 986 |
| LguI | GCTCTTC | 1 cut(s) | 115 |
| Lsp1109I | GCAGC | 4 cut(s) | 117, 352, 1084, 1262 |
| MaeI | CTAG | 3 cut(s) | 810, 852, 963 |
| MaeIII | GTNAC | 1 cut(s) | 728 |
| MalI | GATC | 5 cut(s) | 144, 183, 472, 550, 988 |
| MboI | GATC | 5 cut(s) | 142, 181, 470, 548, 986 |
| MboII | GAAGA | 8 cut(s) | 102, 283, 317, 341, 656, 668, 964, 1230 |
| MfeI | CAATTG | 5 cut(s) | 474, 540, 552, 776, 1324 |
| MflI | RGATCY | 1 cut(s) | 986 |
| MhlI | GDGCHC | 1 cut(s) | 1037 |
| MlsI | TGGCCA | 1 cut(s) | 23 |
| MluNI | TGGCCA | 1 cut(s) | 23 |
| MlyI | GAGTC | 2 cut(s) | 49, 65 |
| Mox20I | TGGCCA | 1 cut(s) | 23 |
| MroI | TCCGGA | 1 cut(s) | 467 |
| MroXI | GAANNNNTTC | 1 cut(s) | 675 |
| MscI | TGGCCA | 1 cut(s) | 23 |
| MseI | TTAA | 5 cut(s) | 426, 515, 920, 959, 1043 |
| MslI | CAYNNNNRTG | 1 cut(s) | 810 |
| Msp20I | TGGCCA | 1 cut(s) | 23 |
| MspI | CCGG | 4 cut(s) | 468, 680, 790, 1015 |
| MspR9I | CCNGG | 4 cut(s) | 600, 681, 791, 874 |
| MunI | CAATTG | 5 cut(s) | 474, 540, 552, 776, 1324 |
| MvaI | CCWGG | 2 cut(s) | 600, 874 |
| MvnI | CGCG | 1 cut(s) | 91 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 322, 356, 365, 899, 1055 |
| NciI | CCSGG | 2 cut(s) | 681, 791 |
| NdeI | CATATG | 1 cut(s) | 754 |
| NdeII | GATC | 5 cut(s) | 142, 181, 470, 548, 986 |
| NlaIII | CATG | 7 cut(s) | 689, 911, 927, 1041, 1141, 1163, 1264 |
| NlaIV | GGNNCC | 3 cut(s) | 794, 988, 1143 |
| NspI | RCATGY | 3 cut(s) | 689, 911, 927 |
| OliI | CACNNNNGTG | 1 cut(s) | 810 |
| PauI | GCGCGC | 1 cut(s) | 89 |
| PciI | ACATGT | 3 cut(s) | 685, 907, 923 |
| PciSI | GCTCTTC | 1 cut(s) | 115 |
| PdmI | GAANNNNTTC | 1 cut(s) | 675 |
| PfeI | GAWTC | 5 cut(s) | 215, 449, 464, 613, 671 |
| PfoI | TCCNGGA | 2 cut(s) | 598, 679 |
| PkrI | GCNGC | 4 cut(s) | 107, 367, 1074, 1277 |
| PleI | GAGTC | 2 cut(s) | 48, 64 |
| PpsI | GAGTC | 2 cut(s) | 48, 64 |
| PscI | ACATGT | 3 cut(s) | 685, 907, 923 |
| Psp124BI | GAGCTC | 1 cut(s) | 1037 |
| Psp6I | CCWGG | 2 cut(s) | 598, 872 |
| PspFI | CCCAGC | 1 cut(s) | 4 |
| PspGI | CCWGG | 2 cut(s) | 598, 872 |
| PspN4I | GGNNCC | 3 cut(s) | 794, 988, 1143 |
| PspPI | GGNCC | 2 cut(s) | 793, 1141 |
| PstI | CTGCAG | 1 cut(s) | 370 |
| PsuI | RGATCY | 1 cut(s) | 986 |
| PteI | GCGCGC | 1 cut(s) | 89 |
| RsaI | GTAC | 5 cut(s) | 150, 782, 867, 1158, 1250 |
| RsaNI | GTAC | 5 cut(s) | 149, 781, 866, 1157, 1249 |
| RseI | CAYNNNNRTG | 1 cut(s) | 810 |
| SacI | GAGCTC | 1 cut(s) | 1037 |
| SapI | GCTCTTC | 1 cut(s) | 115 |
| SaqAI | TTAA | 5 cut(s) | 426, 515, 920, 959, 1043 |
| SatI | GCNGC | 4 cut(s) | 106, 366, 1073, 1276 |
| Sau3AI | GATC | 5 cut(s) | 142, 181, 470, 548, 986 |
| Sau96I | GGNCC | 2 cut(s) | 793, 1141 |
| SchI | GAGTC | 2 cut(s) | 49, 65 |
| ScrFI | CCNGG | 4 cut(s) | 600, 681, 791, 874 |
| SduI | GDGCHC | 1 cut(s) | 1037 |
| SfcI | CTRYAG | 2 cut(s) | 219, 366 |
| SinI | GGWCC | 1 cut(s) | 1141 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 810 |
| SmlI | CTYRAG | 3 cut(s) | 98, 691, 1178 |
| SmoI | CTYRAG | 3 cut(s) | 98, 691, 1178 |
| SspI | AATATT | 1 cut(s) | 244 |
| SspMI | CTAG | 3 cut(s) | 810, 852, 963 |
| SstI | GAGCTC | 1 cut(s) | 1037 |
| StyD4I | CCNGG | 4 cut(s) | 598, 679, 789, 872 |
| StyI | CCWWGG | 1 cut(s) | 24 |
| TaaI | ACNGT | 3 cut(s) | 524, 571, 724 |
| TaqII | GACCGA | 1 cut(s) | 1301 |
| TatI | WGTACW | 4 cut(s) | 780, 865, 1156, 1248 |
| TfiI | GAWTC | 5 cut(s) | 215, 449, 464, 613, 671 |
| Tru1I | TTAA | 5 cut(s) | 426, 515, 920, 959, 1043 |
| Tru9I | TTAA | 5 cut(s) | 426, 515, 920, 959, 1043 |
| TscAI | CASTG | 2 cut(s) | 729, 884 |
| TseI | GCWGC | 4 cut(s) | 105, 365, 1072, 1275 |
| TspDTI | ATGAA | 3 cut(s) | 183, 389, 1176 |
| TspGWI | ACGGA | 1 cut(s) | 245 |
| TspRI | CASTG | 2 cut(s) | 729, 884 |
| VpaK11BI | GGWCC | 1 cut(s) | 1141 |
| XapI | RAATTY | 2 cut(s) | 841, 1169 |
| XceI | RCATGY | 3 cut(s) | 689, 911, 927 |
| XmnI | GAANNNNTTC | 1 cut(s) | 675 |
| XspI | CTAG | 3 cut(s) | 810, 852, 963 |