Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001715

Physical Location & Seq

Genomic Coordinates Reverse (-)

40055441 .. 40062018

Gene Structure 6578 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG372800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGTCGGAGCCAATCATCCTCTCCGACGAAGAAGACTACATTCCGCCCTCAATCCTCTTCCACTCCGTCAAGAAACGCCGAACCGGACCCGGCCCAAACCCAAACCCTACTGTTCTAATCCTCGACGACGATGACCTCACCCCACACCAGTCCACCACCTCCACGCCCTACTTTGAATCGCCGAGCTCCGACATCGAAGTTGTGAAATGCACCAGAGCCCCGTCCGGAGACCTAACTAGGGTTCATGGTTCCGGCCACAAGTCCTCTGGAATTGATGGATTGATATGTTTGGAATCTGATGACGATGACTCTGAAAGCGGTTCTGGAGGGGAAAAGGAGAAGGAGAATGAATCCATCACTAGCGGTTTCGGCATGCTAATCGATGTCCTTACAAAGCAGCAAGAGAAGATGCAAAGAGAAGCTCTGAAAGCTGAAGCAGCAGATATGAAAAAGATACAGAAAGAAAAGCAAAGGTGGGAGAAAGGGAAATTTGCCTTAAAATCGATTGTGGCTGAGATTGATTGTAAAGTTGTGGAACTGGGGTCATTAGGAGGAAATTTGCTTACAAGGTTTGCTGAAAGAGGGCTATCATACCGTATAAAAGCAAATCCAATTGAAAGATCAATTGTCTGGACCATGACAGTTCCAGAACACTTTTCACAGCTTTTTCTTGAAGGAATAGAGATCCAGTATGTATTGCTTGTGTATGAGGCAGAAGAATTTTGTAACCTTGTCATCAAGGATTCTCTTCTGGAACATATTGCCAGGGTTCGAAGTATTTATCCATCTTATACAGTTTGTTATCTCATGAATAGGTCTATGGCGATGTATATTAATAATAGGGAACAAGAAGCGTACAAGAACCAAACAAATATTGGACGGACATACCCAACTGCCAAGGAGGTTGAACTGGAGTTTGCAAAGTTTACCACCAATTTTTTCAAAGTACATTCCAGGCAGTGCAGAGATGAGGTTGAACTTGCTGAACATGTTGTTGGTTTGACATGCAGCCTGTCAACCTGCAAATTTAGAAAGAAGTTAACTAGACTGGATGTAAATGCTAATGGAGCCCTTATCACGAAGGACCGCATTGACCGCGATTTATTAAAGAACAACTTATGGTTAAGAGCTTTGGTAGCTATTCCGAAGGTACAACCGCGATTTGCAAAGGCTATATGGAAGAAGTACCCTACCATGAAATCTCTTTTGAGTGTTTACATGGACCCGATAATATCAGTTCATGAAAAGGAATTTCTGCTCAAGGATTTGACAACAGAAGGCTTACTAGGTGGTGACAGAAAAGTAGGTGAGGTTTGTTCTAAGAGAGTTTATAGGGTTCTTATGGCACAACATGGATGCGTCACAACTGATGATATTGAGGATGGTGCTAATTTCTTCGGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0006139 GO:0006259 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009987 GO:0010212 GO:0010332 GO:0016787 GO:0016788 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

ERCC4

Protein Analysis

468

Amino Acids

52.86

Weight (kDa)

6.14

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ERCC4	PF02732	179 - 332	4.3e-10	ERCC4 domain
EME1-MUS81_C	PF21292	373 - 444	1e-09	EME1/MUS81, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21800 AT2G21800 AT2G21800 AT2G22140 AT2G22140
fragaria_vesca	FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_5g31350 FvH4_5g31350
malus_domestica	MD15G1335700.v1.1 MD15G1404100.v1.1
prunus_persica	Prupe.1G550600_v2.0.a1 Prupe.1G550600_v2.0.a1 Prupe.1G550600_v2.0.a1 Prupe.6G166800_v2.0.a1
pyrus_communis	pycom15g28970
rosa_chinensis	RchiOBHm_Chr2g0117911 RchiOBHm_Chr7g0226601 RchiOBHm_Chr7g0226611 RchiOBHm_Chr7g0228631
rosa_laevigata	RLG00000001714 RLG00000018383
rosa_multiflora	Rmu_sc0001423.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126110 Rroxscaffold_3G00230990 Rroxscaffold_3G00232670
rosa_rugosa	Rorug02G0214800 Rorug02G0214900 Rorug02G0214900 Rorug07G0238500 Rorug07G0238600
rosa_samantha	Rh2AG271200 Rh2BG282800 Rh2DG279100 Rh2DG297000 Rh7AG386100 Rh7AG403200 Rh7BG372700 Rh7BG372800 Rh7CG405400 Rh7CG422500 Rh7DG384700
rosa_wichuraiana	Rw2G021450 Rw7G032410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1028
AccII	CGCG	2 cut(s)	1098, 1159
AccIII	TCCGGA	1 cut(s)	224
AciI	CCGC	6 cut(s)	44, 318, 363, 1087, 1096, 1157
AclWI	GGATC	1 cut(s)	679
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	5 cut(s)	488, 556, 719, 1025, 1250
AcuI	CTGAAG	1 cut(s)	453
AfaI	GTAC	4 cut(s)	857, 948, 1152, 1187
AfiI	CCNNNNNNNGG	1 cut(s)	238
AflIII	ACRYGT	1 cut(s)	988
AgsI	TTSAA	6 cut(s)	176, 617, 674, 908, 943, 977
AjnI	CCWGG	2 cut(s)	764, 953
AjuI	GAANNNNNNNTTGG	2 cut(s)	978, 1010
AluBI	AGCT	7 cut(s)	186, 422, 431, 664, 1130, 1139, 1404
AluI	AGCT	7 cut(s)	186, 422, 431, 664, 1130, 1139, 1404
Alw21I	GWGCWC	1 cut(s)	188
Alw26I	GTCTC	1 cut(s)	222
AlwI	GGATC	1 cut(s)	679
Aor13HI	TCCGGA	1 cut(s)	224
AoxI	GGCC	2 cut(s)	91, 253
ApeKI	GCWGC	3 cut(s)	397, 437, 1008
ApoI	RAATTY	5 cut(s)	488, 556, 719, 1025, 1250
AseI	ATTAAT	1 cut(s)	834
AspS9I	GGNCC	5 cut(s)	86, 92, 633, 1084, 1222
AsuC2I	CCSGG	1 cut(s)	90
AsuHPI	GGTGA	3 cut(s)	130, 1304, 1319
AsuII	TTCGAA	1 cut(s)	772
AvaII	GGWCC	4 cut(s)	86, 633, 1084, 1222
BanII	GRGCYC	3 cut(s)	188, 220, 1072
BbsI	GAAGAC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	188
BbvI	GCAGC	3 cut(s)	409, 449, 1020
BccI	CCATC	4 cut(s)	269, 362, 793, 1376
BcgI	CGANNNNNNTGC	2 cut(s)	361, 395
BciT130I	CCWGG	2 cut(s)	766, 955
BcnI	CCSGG	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	4 cut(s)	237, 360, 1044, 1286
BfuAI	ACCTGC	1 cut(s)	1028
BisI	GCNGC	3 cut(s)	398, 438, 1009
BlsI	GCNGC	3 cut(s)	399, 439, 1010
Bme1390I	CCNGG	3 cut(s)	90, 766, 955
Bme18I	GGWCC	4 cut(s)	86, 633, 1084, 1222
BmgT120I	GGNCC	5 cut(s)	86, 92, 633, 1084, 1222
BmiI	GGNNCC	5 cut(s)	9, 88, 250, 1069, 1224
BmrFI	CCNGG	3 cut(s)	90, 766, 955
BmrI	ACTGGG	1 cut(s)	548
BmsI	GCATC	2 cut(s)	399, 1346
BmuI	ACTGGG	1 cut(s)	548
BpiI	GAAGAC	1 cut(s)	39
BpmI	CTGGAG	2 cut(s)	345, 932
Bpu14I	TTCGAA	1 cut(s)	772
BpuEI	CTTGAG	1 cut(s)	1244
BpuMI	CCSGG	1 cut(s)	90
Bsa29I	ATCGAT	2 cut(s)	381, 503
BsaI	GGTCTC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	765, 897
BsaWI	WCCGGW	2 cut(s)	83, 224
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	5 cut(s)	148, 543, 688, 915, 1053
BseAI	TCCGGA	1 cut(s)	224
BseBI	CCWGG	2 cut(s)	766, 955
BseCI	ATCGAT	2 cut(s)	381, 503
BseDI	CCNNGG	2 cut(s)	765, 897
BseGI	GGATG	4 cut(s)	15, 1057, 1361, 1387
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	5 cut(s)	148, 543, 688, 915, 1053
BseXI	GCAGC	3 cut(s)	409, 449, 1020
BsgI	GTGCAG	1 cut(s)	982
Bsh1236I	CGCG	2 cut(s)	1098, 1159
BshFI	GGCC	2 cut(s)	93, 255
BshVI	ATCGAT	2 cut(s)	381, 503
BsiHKAI	GWGCWC	1 cut(s)	188
BsiSI	CCGG	4 cut(s)	84, 90, 225, 252
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	222
BsnI	GGCC	2 cut(s)	93, 255
Bso31I	GGTCTC	1 cut(s)	222
Bsp119I	TTCGAA	1 cut(s)	772
Bsp1286I	GDGCHC	3 cut(s)	188, 220, 1072
Bsp13I	TCCGGA	1 cut(s)	224
Bsp143I	GATC	2 cut(s)	620, 684
BspACI	CCGC	6 cut(s)	44, 318, 363, 1087, 1096, 1157
BspANI	GGCC	2 cut(s)	93, 255
BspCNI	CTCAG	1 cut(s)	505
BspDI	ATCGAT	2 cut(s)	381, 503
BspEI	TCCGGA	1 cut(s)	224
BspFNI	CGCG	2 cut(s)	1098, 1159
BspHI	TCATGA	2 cut(s)	807, 1240
BspLI	GGNNCC	5 cut(s)	9, 88, 250, 1069, 1224
BspMI	ACCTGC	1 cut(s)	1028
BspPI	GGATC	1 cut(s)	679
BspT104I	TTCGAA	1 cut(s)	772
BspTNI	GGTCTC	1 cut(s)	222
BsrI	ACTGG	5 cut(s)	148, 543, 688, 915, 1053
BssECI	CCNNGG	2 cut(s)	765, 897
BssMI	GATC	2 cut(s)	620, 684
BssT1I	CCWWGG	1 cut(s)	897
Bst2UI	CCWGG	2 cut(s)	766, 955
Bst4CI	ACNGT	4 cut(s)	112, 596, 643, 796
Bst6I	CTCTTC	2 cut(s)	62, 753
BstBI	TTCGAA	1 cut(s)	772
BstC8I	GCNNGC	1 cut(s)	374
BstDEI	CTNAG	2 cut(s)	513, 1320
BstF5I	GGATG	4 cut(s)	15, 1057, 1361, 1387
BstFNI	CGCG	2 cut(s)	1098, 1159
BstKTI	GATC	2 cut(s)	623, 687
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	2 cut(s)	620, 684
BstMWI	GCNNNNNNNGC	6 cut(s)	369, 428, 437, 1067, 1095, 1136
BstNI	CCWGG	2 cut(s)	766, 955
BstNSI	RCATGY	3 cut(s)	376, 992, 1008
BstSCI	CCNGG	3 cut(s)	88, 764, 953
BstUI	CGCG	2 cut(s)	1098, 1159
BstV1I	GCAGC	3 cut(s)	409, 449, 1020
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	684
BstYI	RGATCY	1 cut(s)	684
Bsu15I	ATCGAT	2 cut(s)	381, 503
BsuRI	GGCC	2 cut(s)	93, 255
BsuTUI	ATCGAT	2 cut(s)	381, 503
BtgZI	GCGATG	1 cut(s)	839
BtsCI	GGATG	4 cut(s)	15, 1057, 1361, 1387
BtsI	GCAGTG	1 cut(s)	965
BtsIMutI	CAGTG	1 cut(s)	965
BveI	ACCTGC	1 cut(s)	1028
Cac8I	GCNNGC	1 cut(s)	374
CciI	TCATGA	2 cut(s)	807, 1240
Cfr13I	GGNCC	5 cut(s)	86, 92, 633, 1084, 1222
ClaI	ATCGAT	2 cut(s)	381, 503
CseI	GACGC	1 cut(s)	1348
Csp6I	GTAC	4 cut(s)	856, 947, 1151, 1186
CviQI	GTAC	4 cut(s)	856, 947, 1151, 1186
DdeI	CTNAG	2 cut(s)	513, 1320
DpnI	GATC	2 cut(s)	622, 686
DpnII	GATC	2 cut(s)	620, 684
EaeI	YGGCCR	1 cut(s)	253
Eam1104I	CTCTTC	2 cut(s)	62, 753
EarI	CTCTTC	2 cut(s)	62, 753
EciI	GGCGGA	1 cut(s)	33
Ecl136II	GAGCTC	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	897
Eco24I	GRGCYC	3 cut(s)	188, 220, 1072
Eco31I	GGTCTC	1 cut(s)	222
Eco47I	GGWCC	4 cut(s)	86, 633, 1084, 1222
Eco53kI	GAGCTC	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	453
EcoICRI	GAGCTC	1 cut(s)	186
EcoRII	CCWGG	2 cut(s)	764, 953
EcoT14I	CCWWGG	1 cut(s)	897
EcoT38I	GRGCYC	3 cut(s)	188, 220, 1072
ErhI	CCWWGG	1 cut(s)	897
FalI	AAGNNNNNCTT	2 cut(s)	1100, 1132
Fnu4HI	GCNGC	3 cut(s)	398, 438, 1009
FokI	GGATG	4 cut(s)	2, 1064, 1368, 1394
FriOI	GRGCYC	3 cut(s)	188, 220, 1072
Fsp4HI	GCNGC	3 cut(s)	398, 438, 1009
FspBI	CTAG	4 cut(s)	237, 360, 1044, 1286
GluI	GCNGC	3 cut(s)	398, 438, 1009
GsuI	CTGGAG	2 cut(s)	345, 932
HaeIII	GGCC	2 cut(s)	93, 255
HapII	CCGG	4 cut(s)	84, 90, 225, 252
HgaI	GACGC	1 cut(s)	1348
HincII	GTYRAC	2 cut(s)	1017, 1041
HindII	GTYRAC	2 cut(s)	1017, 1041
HinfI	GANTC	5 cut(s)	176, 293, 308, 350, 743
HpaI	GTTAAC	1 cut(s)	1041
HpaII	CCGG	4 cut(s)	84, 90, 225, 252
HphI	GGTGA	3 cut(s)	130, 1304, 1319
Hpy166II	GTNNAC	5 cut(s)	153, 927, 1017, 1041, 1216
Hpy188I	TCNGA	7 cut(s)	7, 25, 190, 298, 313, 426, 1146
Hpy8I	GTNNAC	5 cut(s)	153, 927, 1017, 1041, 1216
Hpy99I	CGWCG	3 cut(s)	29, 128, 131
HpyAV	CCTTC	5 cut(s)	334, 668, 1075, 1141, 1271
HpyCH4III	ACNGT	4 cut(s)	112, 596, 643, 796
HpyCH4V	TGCA	7 cut(s)	210, 412, 920, 963, 1008, 1023, 1166
HpyF10VI	GCNNNNNNNGC	6 cut(s)	369, 428, 437, 1067, 1095, 1136
HpyF3I	CTNAG	2 cut(s)	513, 1320
Kpn2I	TCCGGA	1 cut(s)	224
KspAI	GTTAAC	1 cut(s)	1041
Kzo9I	GATC	2 cut(s)	620, 684
LmnI	GCTCC	4 cut(s)	7, 191, 1067, 1401
Lsp1109I	GCAGC	3 cut(s)	409, 449, 1020
LweI	GCATC	2 cut(s)	399, 1346
MaeI	CTAG	4 cut(s)	237, 360, 1044, 1286
MaeIII	GTNAC	3 cut(s)	725, 1292, 1360
MalI	GATC	2 cut(s)	622, 686
MboI	GATC	2 cut(s)	620, 684
MboII	GAAGA	8 cut(s)	41, 44, 49, 418, 728, 740, 1192, 1387
MfeI	CAATTG	2 cut(s)	612, 624
MflI	RGATCY	1 cut(s)	684
MhlI	GDGCHC	3 cut(s)	188, 220, 1072
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	2 cut(s)	48, 213
MroI	TCCGGA	1 cut(s)	224
MseI	TTAA	5 cut(s)	497, 834, 1040, 1106, 1124
MspI	CCGG	4 cut(s)	84, 90, 225, 252
MspR9I	CCNGG	3 cut(s)	90, 766, 955
MunI	CAATTG	2 cut(s)	612, 624
MvaI	CCWGG	2 cut(s)	766, 955
MvnI	CGCG	2 cut(s)	1098, 1159
MwoI	GCNNNNNNNGC	6 cut(s)	369, 428, 437, 1067, 1095, 1136
NciI	CCSGG	1 cut(s)	90
NdeII	GATC	2 cut(s)	620, 684
NlaIV	GGNNCC	5 cut(s)	9, 88, 250, 1069, 1224
NmeAIII	GCCGAG	1 cut(s)	207
NmuCI	GTSAC	2 cut(s)	1292, 1360
NspI	RCATGY	3 cut(s)	376, 992, 1008
NspV	TTCGAA	1 cut(s)	772
PaeI	GCATGC	1 cut(s)	376
PagI	TCATGA	2 cut(s)	807, 1240
PciI	ACATGT	1 cut(s)	988
PfeI	GAWTC	4 cut(s)	176, 293, 350, 743
PkrI	GCNGC	3 cut(s)	399, 439, 1010
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
PscI	ACATGT	1 cut(s)	988
PshBI	ATTAAT	1 cut(s)	834
Psp124BI	GAGCTC	1 cut(s)	188
Psp6I	CCWGG	2 cut(s)	764, 953
PspGI	CCWGG	2 cut(s)	764, 953
PspN4I	GGNNCC	5 cut(s)	9, 88, 250, 1069, 1224
PspPI	GGNCC	5 cut(s)	86, 92, 633, 1084, 1222
PsuI	RGATCY	1 cut(s)	684
RsaI	GTAC	4 cut(s)	857, 948, 1152, 1187
RsaNI	GTAC	4 cut(s)	856, 947, 1151, 1186
SacI	GAGCTC	1 cut(s)	188
SaqAI	TTAA	5 cut(s)	497, 834, 1040, 1106, 1124
SatI	GCNGC	3 cut(s)	398, 438, 1009
Sau3AI	GATC	2 cut(s)	620, 684
Sau96I	GGNCC	5 cut(s)	86, 92, 633, 1084, 1222
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	3 cut(s)	90, 766, 955
SduI	GDGCHC	3 cut(s)	188, 220, 1072
SfaNI	GCATC	2 cut(s)	399, 1346
SfuI	TTCGAA	1 cut(s)	772
SinI	GGWCC	4 cut(s)	86, 633, 1084, 1222
SmlI	CTYRAG	1 cut(s)	1259
SmoI	CTYRAG	1 cut(s)	1259
SphI	GCATGC	1 cut(s)	376
SsiI	CCGC	6 cut(s)	44, 318, 363, 1087, 1096, 1157
SspI	AATATT	1 cut(s)	874
SspMI	CTAG	4 cut(s)	237, 360, 1044, 1286
SstI	GAGCTC	1 cut(s)	188
StyD4I	CCNGG	3 cut(s)	88, 764, 953
StyI	CCWWGG	1 cut(s)	897
TaaI	ACNGT	4 cut(s)	112, 596, 643, 796
TaqI	TCGA	5 cut(s)	123, 195, 381, 503, 772
TatI	WGTACW	1 cut(s)	946
TfiI	GAWTC	4 cut(s)	176, 293, 350, 743
Tru1I	TTAA	5 cut(s)	497, 834, 1040, 1106, 1124
Tru9I	TTAA	5 cut(s)	497, 834, 1040, 1106, 1124
TscAI	CASTG	1 cut(s)	965
TseFI	GTSAC	2 cut(s)	1292, 1360
TseI	GCWGC	3 cut(s)	397, 437, 1008
Tsp45I	GTSAC	2 cut(s)	1292, 1360
TspDTI	ATGAA	7 cut(s)	233, 363, 461, 824, 1211, 1229, 1257
TspGWI	ACGGA	2 cut(s)	55, 895
TspRI	CASTG	1 cut(s)	965
VpaK11BI	GGWCC	4 cut(s)	86, 633, 1084, 1222
VspI	ATTAAT	1 cut(s)	834
XapI	RAATTY	5 cut(s)	488, 556, 719, 1025, 1250
XceI	RCATGY	3 cut(s)	376, 992, 1008
XcmI	CCANNNNNNNNNTGG	2 cut(s)	263, 872
XspI	CTAG	4 cut(s)	237, 360, 1044, 1286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.