Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001715

Physical Location & Seq

Genomic Coordinates Forward (+)

21920212 .. 21920610

Gene Structure 399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0238600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGTGTTTTTGTGTGAAACGAAGCAATCTAGCTACAGAATCAATAATCTGAGGCGTCGTATGAAGTATTACAAGGGTATCACTGTGGATCCCTTACAAACTTCTGCTGGCGGCTTGGCTCTGTGGTGGCGTCCAGATGTCACTGTTGAGGTAATTTCCAAAAGCAGAAATCTAATTGATACTTTGATCCATTTCTCAAAATTAGGAACTTCCGTACGAGTTACATGCTTTTACGGGCCTCCCTACCATGGGGACAAAGAACAGTTTTGGTCCTCCCTTTCTTGTCTCAGAGTGCCTGCTGATACCTCGTGGATTTGTATGGGTGACTTTAATGAGCTCGTTTCTAACGATGAGAAAGAGGGAGGAATTCCCTGGCATTGGAATAGGACCGTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0006139 GO:0006259 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009987 GO:0010212 GO:0010332 GO:0016787 GO:0016788 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

ERCC4

Protein Analysis

132

Amino Acids

15.25

Weight (kDa)

8.73

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	2 - 117	5e-07	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21800 AT2G21800 AT2G21800 AT2G22140 AT2G22140
fragaria_vesca	FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_5g31350 FvH4_5g31350
malus_domestica	MD15G1335700.v1.1 MD15G1404100.v1.1
prunus_persica	Prupe.1G550600_v2.0.a1 Prupe.1G550600_v2.0.a1 Prupe.1G550600_v2.0.a1 Prupe.6G166800_v2.0.a1
pyrus_communis	pycom15g28970
rosa_chinensis	RchiOBHm_Chr2g0117911 RchiOBHm_Chr7g0226601 RchiOBHm_Chr7g0226611 RchiOBHm_Chr7g0228631
rosa_laevigata	RLG00000001714 RLG00000018383
rosa_multiflora	Rmu_sc0001423.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126110 Rroxscaffold_3G00230990 Rroxscaffold_3G00232670
rosa_rugosa	Rorug02G0214800 Rorug02G0214900 Rorug02G0214900 Rorug07G0238500 Rorug07G0238600
rosa_samantha	Rh2AG271200 Rh2BG282800 Rh2DG279100 Rh2DG297000 Rh7AG386100 Rh7AG403200 Rh7BG372700 Rh7BG372800 Rh7CG405400 Rh7CG422500 Rh7DG384700
rosa_wichuraiana	Rw2G021450 Rw7G032410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	111
AclWI	GGATC	3 cut(s)	83, 96, 181
AcsI	RAATTY	1 cut(s)	366
AcyI	GRCGYC	2 cut(s)	55, 130
AfaI	GTAC	1 cut(s)	216
AfiI	CCNNNNNNNGG	3 cut(s)	248, 249, 378
AjnI	CCWGG	1 cut(s)	371
AluBI	AGCT	2 cut(s)	33, 337
AluI	AGCT	2 cut(s)	33, 337
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	3 cut(s)	83, 96, 181
AoxI	GGCC	1 cut(s)	236
ApoI	RAATTY	1 cut(s)	366
AspS9I	GGNCC	3 cut(s)	236, 270, 387
AsuHPI	GGTGA	1 cut(s)	335
AvaII	GGWCC	2 cut(s)	270, 387
BaeI	ACNNNNGTAYC	2 cut(s)	61, 94
BamHI	GGATCC	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	339
BauI	CACGAG	1 cut(s)	307
Bbv12I	GWGCWC	1 cut(s)	339
BcgI	CGANNNNNNTGC	2 cut(s)	207, 241
BciT130I	CCWGG	1 cut(s)	373
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	1 cut(s)	30
BfmI	CTRYAG	1 cut(s)	34
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
Bme1390I	CCNGG	1 cut(s)	373
Bme18I	GGWCC	2 cut(s)	270, 387
BmgT120I	GGNCC	3 cut(s)	236, 270, 387
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	373
BsaHI	GRCGYC	2 cut(s)	55, 130
BsaJI	CCNNGG	2 cut(s)	247, 371
Bsc4I	CCNNNNNNNGG	3 cut(s)	248, 249, 378
BseBI	CCWGG	1 cut(s)	373
BseDI	CCNNGG	2 cut(s)	247, 371
BseLI	CCNNNNNNNGG	3 cut(s)	248, 249, 378
BseMII	CTCAG	2 cut(s)	41, 301
BshFI	GGCC	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	339
BsiWI	CGTACG	1 cut(s)	214
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	3 cut(s)	248, 249, 378
BsmAI	GTCTC	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	1 cut(s)	238
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp143I	GATC	2 cut(s)	88, 186
Bsp19I	CCATGG	1 cut(s)	247
BspACI	CCGC	1 cut(s)	111
BspANI	GGCC	1 cut(s)	238
BspCNI	CTCAG	2 cut(s)	42, 300
BspLI	GGNNCC	1 cut(s)	90
BspPI	GGATC	3 cut(s)	83, 96, 181
BssECI	CCNNGG	2 cut(s)	247, 371
BssMI	GATC	2 cut(s)	88, 186
BssNI	GRCGYC	2 cut(s)	55, 130
BssSI	CACGAG	1 cut(s)	307
BssT1I	CCWWGG	1 cut(s)	247
Bst2BI	CACGAG	1 cut(s)	307
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	4 cut(s)	85, 145, 264, 391
BstACI	GRCGYC	2 cut(s)	55, 130
BstC8I	GCNNGC	2 cut(s)	109, 297
BstDEI	CTNAG	2 cut(s)	50, 287
BstDSI	CCRYGG	1 cut(s)	247
BstKTI	GATC	2 cut(s)	91, 189
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	2 cut(s)	88, 186
BstNI	CCWGG	1 cut(s)	373
BstNSI	RCATGY	1 cut(s)	228
BstSCI	CCNGG	1 cut(s)	371
BstSFI	CTRYAG	1 cut(s)	34
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	238
BtgI	CCRYGG	1 cut(s)	247
BtsIMutI	CAGTG	2 cut(s)	81, 141
Cac8I	GCNNGC	2 cut(s)	109, 297
Cfr13I	GGNCC	3 cut(s)	236, 270, 387
CseI	GACGC	2 cut(s)	44, 119
Csp6I	GTAC	1 cut(s)	215
CviAII	CATG	2 cut(s)	225, 248
CviJI	RGCY	5 cut(s)	33, 114, 119, 238, 337
CviKI_1	RGCY	5 cut(s)	33, 114, 119, 238, 337
CviQI	GTAC	1 cut(s)	215
DdeI	CTNAG	2 cut(s)	50, 287
DpnI	GATC	2 cut(s)	90, 188
DpnII	GATC	2 cut(s)	88, 186
Ecl136II	GAGCTC	1 cut(s)	337
Eco130I	CCWWGG	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	339
Eco47I	GGWCC	2 cut(s)	270, 387
Eco53kI	GAGCTC	1 cut(s)	337
EcoICRI	GAGCTC	1 cut(s)	337
EcoRI	GAATTC	1 cut(s)	366
EcoRII	CCWGG	1 cut(s)	371
EcoT14I	CCWWGG	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	2 cut(s)	228, 251
FaiI	YATR	4 cut(s)	62, 226, 249, 320
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	2 cut(s)	224, 247
Fnu4HI	GCNGC	1 cut(s)	112
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	1 cut(s)	30
GluI	GCNGC	1 cut(s)	112
HaeIII	GGCC	1 cut(s)	238
HgaI	GACGC	2 cut(s)	44, 119
Hin1I	GRCGYC	2 cut(s)	55, 130
Hin1II	CATG	2 cut(s)	228, 251
HinfI	GANTC	1 cut(s)	39
HphI	GGTGA	1 cut(s)	335
Hpy188I	TCNGA	2 cut(s)	51, 290
Hpy188III	TCNNGA	1 cut(s)	134
Hpy99I	CGWCG	1 cut(s)	60
HpyCH4III	ACNGT	4 cut(s)	85, 145, 264, 391
HpyF3I	CTNAG	2 cut(s)	50, 287
Hsp92I	GRCGYC	2 cut(s)	55, 130
Hsp92II	CATG	2 cut(s)	228, 251
Kzo9I	GATC	2 cut(s)	88, 186
LpnPI	CCDG	5 cut(s)	93, 147, 309, 358, 385
MaeI	CTAG	1 cut(s)	30
MaeIII	GTNAC	4 cut(s)	139, 220, 323, 391
MalI	GATC	2 cut(s)	90, 188
MboI	GATC	2 cut(s)	88, 186
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	339
MluCI	AATT	4 cut(s)	153, 174, 200, 366
MnlI	CCTC	7 cut(s)	45, 142, 249, 283, 316, 352, 356
MseI	TTAA	1 cut(s)	330
MspR9I	CCNGG	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	373
NcoI	CCATGG	1 cut(s)	247
NdeII	GATC	2 cut(s)	88, 186
NlaIII	CATG	2 cut(s)	228, 251
NlaIV	GGNNCC	1 cut(s)	90
NmuCI	GTSAC	2 cut(s)	139, 323
NspI	RCATGY	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	39
Pfl23II	CGTACG	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	113
Psp124BI	GAGCTC	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	371
PspLI	CGTACG	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	3 cut(s)	236, 270, 387
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
SacI	GAGCTC	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	1 cut(s)	112
Sau3AI	GATC	2 cut(s)	88, 186
Sau96I	GGNCC	3 cut(s)	236, 270, 387
ScrFI	CCNGG	1 cut(s)	373
SduI	GDGCHC	1 cut(s)	339
SetI	ASST	4 cut(s)	35, 153, 308, 339
SfcI	CTRYAG	1 cut(s)	34
SinI	GGWCC	2 cut(s)	270, 387
Sse9I	AATT	4 cut(s)	153, 174, 200, 366
SsiI	CCGC	1 cut(s)	111
SspMI	CTAG	1 cut(s)	30
SstI	GAGCTC	1 cut(s)	339
StyD4I	CCNGG	1 cut(s)	371
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	4 cut(s)	85, 145, 264, 391
TasI	AATT	4 cut(s)	153, 174, 200, 366
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	2 cut(s)	88, 148
TseFI	GTSAC	2 cut(s)	139, 323
Tsp45I	GTSAC	2 cut(s)	139, 323
TspDTI	ATGAA	1 cut(s)	77
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	2 cut(s)	88, 148
VpaK11BI	GGWCC	2 cut(s)	270, 387
XapI	RAATTY	1 cut(s)	366
XceI	RCATGY	1 cut(s)	228
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.