Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001715

Physical Location & Seq

Genomic Coordinates Forward (+)

20550167 .. 20552836

Gene Structure 2670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0214900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGCAATGCACAAGTATCATCTCAGTGCCCACAATCCACTCCAGAAAGCTCAAACTTAGGAGGAACTCACACTCACAATTATCAGTTGCTCATCCTCAGAGCAGCTTTGAAGACTATGATGATGTGAAGCTTCCTCTGCCTTCCCATGTCAAATTCATAACCAGCACTTCAAACCCATTCGTCAAACACTGCCACAAGCTTCGCCTGTCTTCTTCTTACCGCCACACTCATGGTTCAGTTCTCGTTGTGGGTGCTACACCCATCAGGGAAATATGCGAGTTTCAGAAGTCATTGCAAGAGAAAACTGTTATGATGGATTGTTTGCTTGTACCGGATAATTGTGAGGTTCCTGAATGGATTGATGATTTATCTGTTCGTTTTGTGCAAGTGAGCTTTCCCGTGATGAAAAAGCTTTCGGGGATGCAATCAACTGAATCTATTGAAGCAATGGCTCTAATGAGAATACCTACGAGTTTTTCAGATATCAATGCTGATGAAAAGGAGGCAAACTGTAGGGCTTGGTTCCCATCTCCACATCGAGTTCTGGTCCTTGATGGTGTTCAGGATCCGGGTAATCTTGGTACACTGCTCAGATCAGCTACAGCTTTTGGATGGAGGTATTCTACTTTTAACAGAATGGTGCTTTTCTTCTTCCCGGGTGTTGTGATCCATTCAATGAAAAAGCACTCCGAGCTAGCCGAGGAGCATCATTCCAGCTCCCTATTATTTCTGGAACTTGGAATCATCTTGAATCCCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0006139 GO:0006259 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009987 GO:0010212 GO:0010332 GO:0016787 GO:0016788 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

ERCC4

Protein Analysis

253

Amino Acids

28.59

Weight (kDa)

7.73

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21800 AT2G21800 AT2G21800 AT2G22140 AT2G22140
fragaria_vesca	FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_5g31350 FvH4_5g31350
malus_domestica	MD15G1335700.v1.1 MD15G1404100.v1.1
prunus_persica	Prupe.1G550600_v2.0.a1 Prupe.1G550600_v2.0.a1 Prupe.1G550600_v2.0.a1 Prupe.6G166800_v2.0.a1
pyrus_communis	pycom15g28970
rosa_chinensis	RchiOBHm_Chr2g0117911 RchiOBHm_Chr7g0226601 RchiOBHm_Chr7g0226611 RchiOBHm_Chr7g0228631
rosa_laevigata	RLG00000001714 RLG00000018383
rosa_multiflora	Rmu_sc0001423.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126110 Rroxscaffold_3G00230990 Rroxscaffold_3G00232670
rosa_rugosa	Rorug02G0214800 Rorug02G0214900 Rorug02G0214900 Rorug07G0238500 Rorug07G0238600
rosa_samantha	Rh2AG271200 Rh2BG282800 Rh2DG279100 Rh2DG297000 Rh7AG386100 Rh7AG403200 Rh7BG372700 Rh7BG372800 Rh7CG405400 Rh7CG422500 Rh7DG384700
rosa_wichuraiana	Rw2G021450 Rw7G032410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	220
AclWI	GGATC	3 cut(s)	560, 573, 661
AcsI	RAATTY	1 cut(s)	152
AfaI	GTAC	2 cut(s)	330, 583
AgsI	TTSAA	5 cut(s)	110, 171, 443, 675, 751
AlwI	GGATC	3 cut(s)	560, 573, 661
Ama87I	CYCGRG	1 cut(s)	655
ApeKI	GCWGC	1 cut(s)	102
ApoI	RAATTY	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	547
AsuC2I	CCSGG	3 cut(s)	570, 656, 657
AsuNHI	GCTAGC	1 cut(s)	694
AvaI	CYCGRG	1 cut(s)	655
AvaII	GGWCC	1 cut(s)	547
BaeGI	GKGCMC	1 cut(s)	30
BamHI	GGATCC	1 cut(s)	565
BbsI	GAAGAC	2 cut(s)	117, 201
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	5 cut(s)	269, 307, 535, 548, 606
BcnI	CCSGG	3 cut(s)	570, 656, 657
BfaI	CTAG	1 cut(s)	695
BfmI	CTRYAG	2 cut(s)	511, 600
BisI	GCNGC	1 cut(s)	103
BlsI	GCNGC	1 cut(s)	104
Bme1390I	CCNGG	3 cut(s)	570, 656, 657
Bme18I	GGWCC	1 cut(s)	547
BmeT110I	CYCGRG	1 cut(s)	655
BmgT120I	GGNCC	1 cut(s)	547
BmiI	GGNNCC	3 cut(s)	348, 524, 567
BmrFI	CCNGG	3 cut(s)	570, 656, 657
BmsI	GCATC	2 cut(s)	411, 715
BmtI	GCTAGC	1 cut(s)	698
BpiI	GAAGAC	2 cut(s)	117, 201
BpmI	CTGGAG	1 cut(s)	25
BpuMI	CCSGG	3 cut(s)	570, 656, 657
BsaJI	CCNNGG	2 cut(s)	655, 699
BsaWI	WCCGGW	1 cut(s)	331
Bse3DI	GCAATG	3 cut(s)	11, 290, 453
BseDI	CCNNGG	2 cut(s)	655, 699
BseGI	GGATG	3 cut(s)	91, 426, 617
BseMI	GCAATG	3 cut(s)	11, 290, 453
BseMII	CTCAG	3 cut(s)	36, 110, 604
BseRI	GAGGAG	1 cut(s)	716
BseSI	GKGCMC	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	655
BsiSI	CCGG	3 cut(s)	332, 569, 656
BsoBI	CYCGRG	1 cut(s)	655
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	3 cut(s)	565, 593, 666
BspACI	CCGC	1 cut(s)	220
BspCNI	CTCAG	3 cut(s)	35, 109, 603
BspLI	GGNNCC	3 cut(s)	348, 524, 567
BspOI	GCTAGC	1 cut(s)	698
BspPI	GGATC	3 cut(s)	560, 573, 661
BsrDI	GCAATG	3 cut(s)	11, 290, 453
BssECI	CCNNGG	2 cut(s)	655, 699
BssMI	GATC	3 cut(s)	565, 593, 666
Bst4CI	ACNGT	2 cut(s)	307, 512
BstC8I	GCNNGC	1 cut(s)	696
BstDEI	CTNAG	4 cut(s)	22, 56, 96, 590
BstF5I	GGATG	3 cut(s)	91, 426, 617
BstKTI	GATC	3 cut(s)	568, 596, 669
BstMBI	GATC	3 cut(s)	565, 593, 666
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 691
BstSCI	CCNGG	3 cut(s)	568, 654, 655
BstSFI	CTRYAG	2 cut(s)	511, 600
BstSLI	GKGCMC	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	114
BstV2I	GAAGAC	2 cut(s)	117, 201
BstX2I	RGATCY	1 cut(s)	565
BstXI	CCANNNNNNTGG	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	565
BtsCI	GGATG	3 cut(s)	91, 426, 617
BtsI	GCAGTG	2 cut(s)	187, 584
BtsIMutI	CAGTG	3 cut(s)	30, 187, 584
Cac8I	GCNNGC	1 cut(s)	696
Cfr13I	GGNCC	1 cut(s)	547
Cfr9I	CCCGGG	1 cut(s)	655
Csp6I	GTAC	2 cut(s)	329, 582
CviAII	CATG	2 cut(s)	146, 230
CviQI	GTAC	2 cut(s)	329, 582
DdeI	CTNAG	4 cut(s)	22, 56, 96, 590
DpnI	GATC	3 cut(s)	567, 595, 668
DpnII	GATC	3 cut(s)	565, 593, 666
Eco32I	GATATC	1 cut(s)	484
Eco47I	GGWCC	1 cut(s)	547
Eco88I	CYCGRG	1 cut(s)	655
EcoRV	GATATC	1 cut(s)	484
FaeI	CATG	2 cut(s)	149, 233
FaiI	YATR	7 cut(s)	117, 147, 158, 231, 274, 311, 760
FatI	CATG	2 cut(s)	145, 229
Fnu4HI	GCNGC	1 cut(s)	103
FokI	GGATG	3 cut(s)	78, 433, 624
Fsp4HI	GCNGC	1 cut(s)	103
FspBI	CTAG	1 cut(s)	695
GluI	GCNGC	1 cut(s)	103
GsuI	CTGGAG	1 cut(s)	25
HapII	CCGG	3 cut(s)	332, 569, 656
Hin1II	CATG	2 cut(s)	149, 233
HindIII	AAGCTT	3 cut(s)	128, 197, 410
HinfI	GANTC	3 cut(s)	434, 741, 751
HpaII	CCGG	3 cut(s)	332, 569, 656
Hpy166II	GTNNAC	1 cut(s)	584
Hpy188I	TCNGA	5 cut(s)	99, 285, 481, 593, 691
Hpy188III	TCNNGA	5 cut(s)	42, 350, 563, 731, 748
Hpy8I	GTNNAC	1 cut(s)	584
HpyAV	CCTTC	1 cut(s)	150
HpyCH4III	ACNGT	2 cut(s)	307, 512
HpyCH4V	TGCA	5 cut(s)	4, 9, 295, 385, 424
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 691
HpyF3I	CTNAG	4 cut(s)	22, 56, 96, 590
Hsp92II	CATG	2 cut(s)	149, 233
Kzo9I	GATC	3 cut(s)	565, 593, 666
LmnI	GCTCC	2 cut(s)	703, 722
Lsp1109I	GCAGC	1 cut(s)	114
LweI	GCATC	2 cut(s)	411, 715
MaeI	CTAG	1 cut(s)	695
MalI	GATC	3 cut(s)	567, 595, 668
MboI	GATC	3 cut(s)	565, 593, 666
MboII	GAAGA	5 cut(s)	122, 201, 204, 640, 643
MflI	RGATCY	1 cut(s)	565
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	3 cut(s)	77, 152, 337
MnlI	CCTC	7 cut(s)	54, 105, 144, 337, 496, 609, 694
MseI	TTAA	1 cut(s)	630
MslI	CAYNNNNRTG	2 cut(s)	23, 228
MspI	CCGG	3 cut(s)	332, 569, 656
MspR9I	CCNGG	3 cut(s)	570, 656, 657
MwoI	GCNNNNNNNGC	2 cut(s)	136, 691
NciI	CCSGG	3 cut(s)	570, 656, 657
NdeII	GATC	3 cut(s)	565, 593, 666
NheI	GCTAGC	1 cut(s)	694
NlaIII	CATG	2 cut(s)	149, 233
NlaIV	GGNNCC	3 cut(s)	348, 524, 567
NmeAIII	GCCGAG	1 cut(s)	724
PfeI	GAWTC	3 cut(s)	434, 741, 751
PkrI	GCNGC	1 cut(s)	104
PspN4I	GGNNCC	3 cut(s)	348, 524, 567
PspPI	GGNCC	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	565
RsaI	GTAC	2 cut(s)	330, 583
RsaNI	GTAC	2 cut(s)	329, 582
RseI	CAYNNNNRTG	2 cut(s)	23, 228
SaqAI	TTAA	1 cut(s)	630
SatI	GCNGC	1 cut(s)	103
Sau3AI	GATC	3 cut(s)	565, 593, 666
Sau96I	GGNCC	1 cut(s)	547
ScrFI	CCNGG	3 cut(s)	570, 656, 657
SduI	GDGCHC	1 cut(s)	30
SfaNI	GCATC	2 cut(s)	411, 715
SfcI	CTRYAG	2 cut(s)	511, 600
SinI	GGWCC	1 cut(s)	547
SmaI	CCCGGG	1 cut(s)	657
SmiMI	CAYNNNNRTG	2 cut(s)	23, 228
Sse9I	AATT	3 cut(s)	77, 152, 337
SsiI	CCGC	1 cut(s)	220
SspMI	CTAG	1 cut(s)	695
StyD4I	CCNGG	3 cut(s)	568, 654, 655
TaaI	ACNGT	2 cut(s)	307, 512
TaqI	TCGA	1 cut(s)	538
TasI	AATT	3 cut(s)	77, 152, 337
TfiI	GAWTC	3 cut(s)	434, 741, 751
Tru1I	TTAA	1 cut(s)	630
Tru9I	TTAA	1 cut(s)	630
TscAI	CASTG	3 cut(s)	30, 194, 591
TseI	GCWGC	1 cut(s)	102
TspDTI	ATGAA	4 cut(s)	145, 419, 510, 692
TspMI	CCCGGG	1 cut(s)	655
TspRI	CASTG	3 cut(s)	30, 194, 591
VpaK11BI	GGWCC	1 cut(s)	547
XapI	RAATTY	1 cut(s)	152
XmaI	CCCGGG	1 cut(s)	655
XspI	CTAG	1 cut(s)	695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.