Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001715

Physical Location & Seq

Genomic Coordinates Forward (+)

21919373 .. 21920122

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0238500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGTCGAATGGTCCAAGAAAGTCAGTCAGTCAGGTGAGATGGCGCACCCCTCCCTATCTATTGCTCCACCGAATAACCAAATTCAGCGGACCCTCCCCCCCCAAGACCATTCTACCCCCCTCCGTCTCTCAGGAGGCAGTTTCTGCCAGTTTGGATGTTTCTTTGGGCCAGCCCATCACCCCTTTTGGTGCGATGGTTAAAGAACAAGCCCAATACTTAAGTGCAAGTAGGCCAAACCCAAACTCAGATGACAACAGGTGTTCCCCCATTACCTTTACTCCTCCAGCTCATACTTCTCGATTCCCTCACCCACCCCCAGCGAAAAAACCCAATCATCTGGTTAACCCTTGTACCTCTTTCAAGCAGTCTAAAACAAAGCTCCTATCCTCTCTCGGTATTCCTCAAGTGGAGCCAGACTCTTCTATCCTTGTGGATCCAATAGGAAAAGGTAGATCTAGGGGCAAGGGAAGGCTTGGCAGGGGCGGTAGAGTGGGAGGTAAACAACTAGAGAGGGAGGATCGCACTGGTGGTAAGACAACAACAGGAGGTTGTAGAAGATCGGAGAGGAGGAATTATGGTTGTTCCCCAAGCCCAGACTTCAAGTTAGGGGAGTTTCAGGAGATACGTGTGGAGATTTTGGAGGATTCGGGGGAGCTCGGAAGGGATACCTCAAACTTTGTTACTGAATCGGAAGTTTCATCTTCAAAGCATGGCGGTGGTGGCTGGCCAACAGCCACACGAGATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko01100 map01100

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N UVR

Protein Analysis

249

Amino Acids

26.97

Weight (kDa)

9.93

Isoelectric Point (pI)

57.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21800 AT2G21800 AT2G21800 AT2G22140 AT2G22140
fragaria_vesca	FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_5g31350 FvH4_5g31350
malus_domestica	MD15G1335700.v1.1 MD15G1404100.v1.1
prunus_persica	Prupe.1G550600_v2.0.a1 Prupe.1G550600_v2.0.a1 Prupe.1G550600_v2.0.a1 Prupe.6G166800_v2.0.a1
pyrus_communis	pycom15g28970
rosa_chinensis	RchiOBHm_Chr2g0117911 RchiOBHm_Chr7g0226601 RchiOBHm_Chr7g0226611 RchiOBHm_Chr7g0228631
rosa_laevigata	RLG00000001714 RLG00000018383
rosa_multiflora	Rmu_sc0001423.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126110 Rroxscaffold_3G00230990 Rroxscaffold_3G00232670
rosa_rugosa	Rorug02G0214800 Rorug02G0214900 Rorug02G0214900 Rorug07G0238500 Rorug07G0238600
rosa_samantha	Rh2AG271200 Rh2BG282800 Rh2DG279100 Rh2DG297000 Rh7AG386100 Rh7AG403200 Rh7BG372700 Rh7BG372800 Rh7CG405400 Rh7CG422500 Rh7DG384700
rosa_wichuraiana	Rw2G021450 Rw7G032410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	87, 483, 714
AclWI	GGATC	3 cut(s)	428, 441, 525
AcoI	YGGCCR	1 cut(s)	725
AcsI	RAATTY	1 cut(s)	80
AfaI	GTAC	1 cut(s)	352
AflII	CTTAAG	1 cut(s)	217
AflIII	ACRYGT	1 cut(s)	625
AgsI	TTSAA	3 cut(s)	361, 601, 705
AluBI	AGCT	3 cut(s)	287, 379, 655
AluI	AGCT	3 cut(s)	287, 379, 655
Alw21I	GWGCWC	1 cut(s)	657
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	3 cut(s)	428, 441, 525
AlwNI	CAGNNNCTG	1 cut(s)	143
AoxI	GGCC	3 cut(s)	166, 230, 725
ApoI	RAATTY	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	45
AspS9I	GGNCC	3 cut(s)	11, 89, 166
AsuHPI	GGTGA	3 cut(s)	46, 169, 299
AvaII	GGWCC	2 cut(s)	11, 89
BaeI	ACNNNNGTAYC	2 cut(s)	334, 367
BalI	TGGCCA	1 cut(s)	727
BamHI	GGATCC	1 cut(s)	433
BanII	GRGCYC	1 cut(s)	657
BauI	CACGAG	1 cut(s)	738
Bbv12I	GWGCWC	1 cut(s)	657
BccI	CCATC	3 cut(s)	33, 182, 187
BciVI	GTATCC	1 cut(s)	658
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	2 cut(s)	456, 506
BfrI	CTTAAG	1 cut(s)	217
BfuI	GTATCC	1 cut(s)	658
BglII	AGATCT	1 cut(s)	452
Bme18I	GGWCC	2 cut(s)	11, 89
BmgT120I	GGNCC	3 cut(s)	11, 89, 166
BmiI	GGNNCC	3 cut(s)	91, 411, 435
BplI	GAGNNNNNCTC	2 cut(s)	401, 433
BpmI	CTGGAG	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	387
BsaAI	YACGTR	1 cut(s)	626
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bse1I	ACTGG	2 cut(s)	147, 529
BseGI	GGATG	1 cut(s)	160
BseMII	CTCAG	2 cut(s)	143, 258
BseNI	ACTGG	2 cut(s)	147, 529
BseRI	GAGGAG	2 cut(s)	270, 580
BseYI	CCCAGC	1 cut(s)	316
BshFI	GGCC	3 cut(s)	168, 232, 727
BsiHKAI	GWGCWC	1 cut(s)	657
BsmAI	GTCTC	1 cut(s)	130
BsmBI	CGTCTC	1 cut(s)	130
BsnI	GGCC	3 cut(s)	168, 232, 727
Bsp1286I	GDGCHC	1 cut(s)	657
Bsp143I	GATC	5 cut(s)	433, 452, 517, 557, 742
BspACI	CCGC	3 cut(s)	87, 483, 714
BspANI	GGCC	3 cut(s)	168, 232, 727
BspCNI	CTCAG	2 cut(s)	142, 257
BspLI	GGNNCC	3 cut(s)	91, 411, 435
BspPI	GGATC	3 cut(s)	428, 441, 525
BspTI	CTTAAG	1 cut(s)	217
BsrI	ACTGG	2 cut(s)	147, 529
BssMI	GATC	5 cut(s)	433, 452, 517, 557, 742
BssSI	CACGAG	1 cut(s)	738
Bst2BI	CACGAG	1 cut(s)	738
Bst6I	CTCTTC	1 cut(s)	424
BstAFI	CTTAAG	1 cut(s)	217
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstBAI	YACGTR	1 cut(s)	626
BstC8I	GCNNGC	2 cut(s)	170, 725
BstDEI	CTNAG	2 cut(s)	129, 244
BstF5I	GGATG	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	5 cut(s)	436, 455, 520, 560, 745
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	5 cut(s)	433, 452, 517, 557, 742
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 720
BstX2I	RGATCY	2 cut(s)	433, 452
BstXI	CCANNNNNNTGG	1 cut(s)	337
BstYI	RGATCY	2 cut(s)	433, 452
BsuI	GTATCC	1 cut(s)	658
BsuRI	GGCC	3 cut(s)	168, 232, 727
BtgZI	GCGATG	1 cut(s)	206
BtsCI	GGATG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	2 cut(s)	170, 725
CaiI	CAGNNNCTG	1 cut(s)	143
CfoI	GCGC	1 cut(s)	45
Cfr13I	GGNCC	3 cut(s)	11, 89, 166
Csp6I	GTAC	1 cut(s)	351
CviAII	CATG	1 cut(s)	710
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	2 cut(s)	129, 244
DpnI	GATC	5 cut(s)	435, 454, 519, 559, 744
DpnII	GATC	5 cut(s)	433, 452, 517, 557, 742
EaeI	YGGCCR	1 cut(s)	725
Eam1104I	CTCTTC	1 cut(s)	424
EarI	CTCTTC	1 cut(s)	424
Ecl136II	GAGCTC	1 cut(s)	655
Eco24I	GRGCYC	1 cut(s)	657
Eco47I	GGWCC	2 cut(s)	11, 89
Eco53kI	GAGCTC	1 cut(s)	655
EcoICRI	GAGCTC	1 cut(s)	655
EcoT38I	GRGCYC	1 cut(s)	657
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	1 cut(s)	713
FaiI	YATR	3 cut(s)	291, 576, 711
FatI	CATG	1 cut(s)	709
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	1 cut(s)	657
FspBI	CTAG	2 cut(s)	456, 506
GlaI	GCGC	1 cut(s)	44
GsaI	CCCAGC	1 cut(s)	320
GsuI	CTGGAG	1 cut(s)	267
HaeIII	GGCC	3 cut(s)	168, 232, 727
HhaI	GCGC	1 cut(s)	45
Hin1II	CATG	1 cut(s)	713
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	4 cut(s)	300, 416, 644, 686
HpaI	GTTAAC	1 cut(s)	343
HphI	GGTGA	3 cut(s)	46, 169, 299
Hpy166II	GTNNAC	2 cut(s)	343, 500
Hpy188I	TCNGA	4 cut(s)	247, 562, 659, 691
Hpy188III	TCNNGA	3 cut(s)	131, 297, 617
Hpy8I	GTNNAC	2 cut(s)	343, 500
HpyAV	CCTTC	2 cut(s)	462, 654
HpyCH4IV	ACGT	1 cut(s)	625
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 720
HpyF3I	CTNAG	2 cut(s)	129, 244
HpySE526I	ACGT	1 cut(s)	625
Hsp92II	CATG	1 cut(s)	713
HspAI	GCGC	1 cut(s)	43
KspAI	GTTAAC	1 cut(s)	343
Kzo9I	GATC	5 cut(s)	433, 452, 517, 557, 742
LmnI	GCTCC	4 cut(s)	69, 384, 409, 652
MaeI	CTAG	2 cut(s)	456, 506
MaeII	ACGT	1 cut(s)	625
MaeIII	GTNAC	1 cut(s)	679
MalI	GATC	5 cut(s)	435, 454, 519, 559, 744
MboI	GATC	5 cut(s)	433, 452, 517, 557, 742
MboII	GAAGA	3 cut(s)	411, 567, 693
MflI	RGATCY	2 cut(s)	433, 452
MhlI	GDGCHC	1 cut(s)	657
MlsI	TGGCCA	1 cut(s)	727
MluCI	AATT	2 cut(s)	80, 571
MluNI	TGGCCA	1 cut(s)	727
MlyI	GAGTC	1 cut(s)	410
Mox20I	TGGCCA	1 cut(s)	727
MscI	TGGCCA	1 cut(s)	727
MseI	TTAA	3 cut(s)	198, 218, 342
MslI	CAYNNNNRTG	1 cut(s)	714
Msp20I	TGGCCA	1 cut(s)	727
MspA1I	CMGCKG	1 cut(s)	87
MspCI	CTTAAG	1 cut(s)	217
MwoI	GCNNNNNNNGC	2 cut(s)	143, 720
NdeII	GATC	5 cut(s)	433, 452, 517, 557, 742
NlaIII	CATG	1 cut(s)	713
NlaIV	GGNNCC	3 cut(s)	91, 411, 435
PfeI	GAWTC	3 cut(s)	300, 644, 686
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
Ppu21I	YACGTR	1 cut(s)	626
Psp124BI	GAGCTC	1 cut(s)	657
PspFI	CCCAGC	1 cut(s)	316
PspN4I	GGNNCC	3 cut(s)	91, 411, 435
PspPI	GGNCC	3 cut(s)	11, 89, 166
PstNI	CAGNNNCTG	1 cut(s)	143
PsuI	RGATCY	2 cut(s)	433, 452
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
RseI	CAYNNNNRTG	1 cut(s)	714
SacI	GAGCTC	1 cut(s)	657
SaqAI	TTAA	3 cut(s)	198, 218, 342
Sau3AI	GATC	5 cut(s)	433, 452, 517, 557, 742
Sau96I	GGNCC	3 cut(s)	11, 89, 166
SchI	GAGTC	1 cut(s)	410
SduI	GDGCHC	1 cut(s)	657
SinI	GGWCC	2 cut(s)	11, 89
SmiMI	CAYNNNNRTG	1 cut(s)	714
SmlI	CTYRAG	2 cut(s)	217, 402
SmoI	CTYRAG	2 cut(s)	217, 402
Sse9I	AATT	2 cut(s)	80, 571
SsiI	CCGC	3 cut(s)	87, 483, 714
SspMI	CTAG	2 cut(s)	456, 506
SstI	GAGCTC	1 cut(s)	657
TaiI	ACGT	1 cut(s)	628
TaqI	TCGA	2 cut(s)	5, 298
TasI	AATT	2 cut(s)	80, 571
TfiI	GAWTC	3 cut(s)	300, 644, 686
Tru1I	TTAA	3 cut(s)	198, 218, 342
Tru9I	TTAA	3 cut(s)	198, 218, 342
TscAI	CASTG	1 cut(s)	529
TspDTI	ATGAA	1 cut(s)	687
TspGWI	ACGGA	1 cut(s)	112
TspRI	CASTG	1 cut(s)	529
Vha464I	CTTAAG	1 cut(s)	217
VpaK11BI	GGWCC	2 cut(s)	11, 89
XapI	RAATTY	1 cut(s)	80
XspI	CTAG	2 cut(s)	456, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.