FvH4_6g00610

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005537
Physical Location & Seq
Reverse (-)
356235 .. 357783
1549 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00610.t1

Sequence Viewer

Length: 1104 bp
ATGGATGAAAATGAAGCACCACCATCAGAAAGCAAAGCACAAAAAGCAAGCAGAAGCTGCAGCATCACTGAAATACAGGAAGACTCGAAAGAGAAGACCAAAGGAAATGAAACTGTTCCATTTCACAAGCTGTTTTCATTTGCAGATTCAACTGATATCTTGTTGATGACCATAGGATCAGTTGGTGCCATTGGAAATGGGTTGTGTATGCCCATTATGACTATACTCTTTGGCCAATTGACTGATTCTTTTGGATGTAGCTACAATAGCAAAGACATAGTTCATGCTGTTTCCAAGGTCTCTCTAAGATACATCTACTTGGCTTTGGGGGCTGGGGTTGCAGCATTCCTTCAGGTAGCTTGCTGGATAGCCACAGGGGAGCGACAGGCCGCACGAATAAGGAGTTTGTACCTGAAAACCATATTAAGGCAAGAAGTAGCTTTCTTCGATATGGAAACAAACACTGGGGAGGTTGTTGGGAGGATGTCTGGTGATACTGTCTTGATACAAGATGCAATGGGTGAAAAGGTTGGAAAGTTTATACAACTCATATCGACATTCATTGGAGGCATTGTGATAGCATTCATTAGAGGGTGGCTTCTAACACTCGTCTTGATGTCCACTATTCCACTTCTTGTGGCAGCCGGAGCAGTAATGTCCATTATCATAGTCAAAATGTCTTCCAGAGGACAAAATGCCTATGCGAAAGCTGCGACTTTAGTTGAACAAACAATCAGCTCAATCAGAACTGTTGCTTCATTTACCGGAGAGACACAAGCTATAACCAACTATAAGAGATATCTTGTAGATGCTTACAAGTCTGGTGTTCATGAAGGCTTGGCAGCCGGTTTAGGTTTTGGCATGTTTATGTTGGTTATGTTATCCAGTTATGGTCTGGCTACATGGTTTGGTGCAAAAATGGTATTGGAAAGAGGATATAGAGGGGGTGCTGTGGTCAATGTGATTGTCGCTGTGATGGCTGGTTCCATGTCTCTAGGCCAGGCATCTCCCTTTGTGAGTGCATTTGCTGCTGCTGCAGCCTTCGATAAGCATATCAAAACTGACACTTTGATAAGCATCAAGGATGGTTCTATGCATCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

368

Amino Acids

39.28

Weight (kDa)

8.55

Isoelectric Point (pI)

36.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 58 - 329 5.8e-59 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 185
AciI CCGC 1 cut(s) 390
AclWI GGATC 1 cut(s) 184
AcoI YGGCCR 1 cut(s) 232
AcuI CTGAAG 1 cut(s) 335
AfaI GTAC 1 cut(s) 410
AfiI CCNNNNNNNGG 1 cut(s) 426
AgsI TTSAA 2 cut(s) 150, 725
AjnI CCWGG 1 cut(s) 999
AluBI AGCT 8 cut(s) 57, 130, 261, 359, 440, 710, 738, 779
AluI AGCT 8 cut(s) 57, 130, 261, 359, 440, 710, 738, 779
Alw26I GTCTC 3 cut(s) 304, 764, 996
AlwI GGATC 1 cut(s) 184
AlwNI CAGNNNCTG 1 cut(s) 57
AoxI GGCC 3 cut(s) 232, 387, 997
Asp700I GAANNNNTTC 1 cut(s) 114
AsuHPI GGTGA 2 cut(s) 503, 533
BalI TGGCCA 1 cut(s) 234
BanI GGYRCC 1 cut(s) 185
BbsI GAAGAC 3 cut(s) 87, 101, 672
BccI CCATC 3 cut(s) 31, 970, 1079
BciT130I CCWGG 1 cut(s) 1001
BcoDI GTCTC 3 cut(s) 304, 764, 996
BfaI CTAG 1 cut(s) 995
BfmI CTRYAG 2 cut(s) 58, 1035
Bme1390I CCNGG 1 cut(s) 1001
BmiI GGNNCC 2 cut(s) 187, 985
BmrFI CCNGG 1 cut(s) 1001
BmrI ACTGGG 1 cut(s) 474
BmsI GCATC 5 cut(s) 72, 502, 799, 1013, 1086
BmuI ACTGGG 1 cut(s) 474
BpiI GAAGAC 3 cut(s) 87, 101, 672
BsaBI GATNNNNATC 1 cut(s) 1076
BsaI GGTCTC 1 cut(s) 304
BsaJI CCNNGG 1 cut(s) 294
BsaWI WCCGGW 1 cut(s) 764
BsaXI ACNNNNNCTCC 2 cut(s) 558, 588
Bsc4I CCNNNNNNNGG 1 cut(s) 426
Bse118I RCCGGY 1 cut(s) 845
Bse1I ACTGG 2 cut(s) 469, 885
Bse3DI GCAATG 1 cut(s) 522
Bse8I GATNNNNATC 1 cut(s) 1076
BseBI CCWGG 1 cut(s) 1001
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 5 cut(s) 10, 260, 489, 1090, 1096
BseJI GATNNNNATC 1 cut(s) 1076
BseLI CCNNNNNNNGG 1 cut(s) 426
BseMI GCAATG 1 cut(s) 522
BseNI ACTGG 2 cut(s) 469, 885
BseYI CCCAGC 1 cut(s) 332
BshFI GGCC 3 cut(s) 234, 389, 999
BshNI GGYRCC 1 cut(s) 185
BsiSI CCGG 3 cut(s) 645, 765, 846
BslI CCNNNNNNNGG 1 cut(s) 426
BsmAI GTCTC 3 cut(s) 304, 764, 996
BsmI GAATGC 2 cut(s) 344, 581
BsnI GGCC 3 cut(s) 234, 389, 999
Bso31I GGTCTC 1 cut(s) 304
Bsp143I GATC 1 cut(s) 176
BspACI CCGC 1 cut(s) 390
BspANI GGCC 3 cut(s) 234, 389, 999
BspHI TCATGA 1 cut(s) 829
BspLI GGNNCC 2 cut(s) 187, 985
BspMAI CTGCAG 2 cut(s) 62, 1039
BspPI GGATC 1 cut(s) 184
BspT107I GGYRCC 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 304
BsrDI GCAATG 1 cut(s) 522
BsrFI RCCGGY 1 cut(s) 845
BsrI ACTGG 2 cut(s) 469, 885
BssAI RCCGGY 1 cut(s) 845
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 1 cut(s) 176
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 1001
Bst4CI ACNGT 3 cut(s) 115, 499, 751
BstAPI GCANNNNNTGC 2 cut(s) 57, 1028
BstC8I GCNNGC 2 cut(s) 49, 361
BstDEI CTNAG 2 cut(s) 305, 1101
BstF5I GGATG 5 cut(s) 10, 260, 489, 1090, 1096
BstKTI GATC 1 cut(s) 179
BstMAI GTCTC 3 cut(s) 304, 764, 996
BstMBI GATC 1 cut(s) 176
BstNI CCWGG 1 cut(s) 1001
BstNSI RCATGY 1 cut(s) 865
BstSCI CCNGG 1 cut(s) 999
BstSFI CTRYAG 2 cut(s) 58, 1035
BstV2I GAAGAC 3 cut(s) 87, 101, 672
BsuRI GGCC 3 cut(s) 234, 389, 999
BtsCI GGATG 5 cut(s) 10, 260, 489, 1090, 1096
BtsIMutI CAGTG 2 cut(s) 66, 462
Cac8I GCNNGC 2 cut(s) 49, 361
CaiI CAGNNNCTG 1 cut(s) 57
CciI TCATGA 1 cut(s) 829
Cfr10I RCCGGY 1 cut(s) 845
Csp6I GTAC 1 cut(s) 409
CviAII CATG 5 cut(s) 284, 830, 862, 903, 988
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 2 cut(s) 305, 1101
DpnI GATC 1 cut(s) 178
DpnII GATC 1 cut(s) 176
EaeI YGGCCR 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 294
Eco31I GGTCTC 1 cut(s) 304
Eco32I GATATC 2 cut(s) 157, 800
Eco57I CTGAAG 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 999
EcoRV GATATC 2 cut(s) 157, 800
EcoT14I CCWWGG 1 cut(s) 294
EcoT22I ATGCAT 1 cut(s) 1098
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 5 cut(s) 287, 833, 865, 906, 991
FatI CATG 5 cut(s) 283, 829, 861, 902, 987
FokI GGATG 5 cut(s) 17, 267, 496, 1083, 1097
FspBI CTAG 1 cut(s) 995
GsaI CCCAGC 1 cut(s) 336
HaeIII GGCC 3 cut(s) 234, 389, 999
HapII CCGG 3 cut(s) 645, 765, 846
Hin1II CATG 5 cut(s) 287, 833, 865, 906, 991
HinfI GANTC 3 cut(s) 83, 146, 245
HpaII CCGG 3 cut(s) 645, 765, 846
HphI GGTGA 2 cut(s) 503, 533
Hpy166II GTNNAC 1 cut(s) 621
Hpy188I TCNGA 2 cut(s) 28, 746
Hpy188III TCNNGA 4 cut(s) 502, 613, 684, 830
Hpy8I GTNNAC 1 cut(s) 621
HpyAV CCTTC 3 cut(s) 359, 827, 1051
HpyCH4III ACNGT 3 cut(s) 115, 499, 751
HpyCH4V TGCA 8 cut(s) 60, 143, 341, 515, 914, 1022, 1037, 1096
HpyF3I CTNAG 2 cut(s) 305, 1101
Hsp92II CATG 5 cut(s) 287, 833, 865, 906, 991
Kzo9I GATC 1 cut(s) 176
LmnI GCTCC 2 cut(s) 379, 647
LweI GCATC 5 cut(s) 72, 502, 799, 1013, 1086
MaeI CTAG 1 cut(s) 995
MalI GATC 1 cut(s) 178
MboI GATC 1 cut(s) 176
MboII GAAGA 4 cut(s) 92, 106, 436, 672
MfeI CAATTG 1 cut(s) 236
MlsI TGGCCA 1 cut(s) 234
MluCI AATT 1 cut(s) 236
MluNI TGGCCA 1 cut(s) 234
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 511
MnlI CCTC 7 cut(s) 463, 474, 560, 584, 680, 926, 935
Mox20I TGGCCA 1 cut(s) 234
Mph1103I ATGCAT 1 cut(s) 1098
MroXI GAANNNNTTC 1 cut(s) 114
MscI TGGCCA 1 cut(s) 234
MseI TTAA 1 cut(s) 425
MslI CAYNNNNRTG 1 cut(s) 866
Msp20I TGGCCA 1 cut(s) 234
MspI CCGG 3 cut(s) 645, 765, 846
MspR9I CCNGG 1 cut(s) 1001
MunI CAATTG 1 cut(s) 236
Mva1269I GAATGC 2 cut(s) 344, 581
MvaI CCWGG 1 cut(s) 1001
NdeII GATC 1 cut(s) 176
NlaIII CATG 5 cut(s) 287, 833, 865, 906, 991
NlaIV GGNNCC 2 cut(s) 187, 985
NsiI ATGCAT 1 cut(s) 1098
NspI RCATGY 1 cut(s) 865
PagI TCATGA 1 cut(s) 829
PctI GAATGC 2 cut(s) 344, 581
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 2 cut(s) 146, 245
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 999
PspFI CCCAGC 1 cut(s) 332
PspGI CCWGG 1 cut(s) 999
PspN4I GGNNCC 2 cut(s) 187, 985
PstI CTGCAG 2 cut(s) 62, 1039
PstNI CAGNNNCTG 1 cut(s) 57
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
RseI CAYNNNNRTG 1 cut(s) 866
SaqAI TTAA 1 cut(s) 425
Sau3AI GATC 1 cut(s) 176
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 1001
SfaNI GCATC 5 cut(s) 72, 502, 799, 1013, 1086
SfcI CTRYAG 2 cut(s) 58, 1035
SmiMI CAYNNNNRTG 1 cut(s) 866
Sse9I AATT 1 cut(s) 236
SsiI CCGC 1 cut(s) 390
SspMI CTAG 1 cut(s) 995
StyD4I CCNGG 1 cut(s) 999
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 3 cut(s) 115, 499, 751
TaqI TCGA 4 cut(s) 86, 447, 554, 1044
TasI AATT 1 cut(s) 236
TauI GCSGC 1 cut(s) 392
TfiI GAWTC 2 cut(s) 146, 245
Tru1I TTAA 1 cut(s) 425
Tru9I TTAA 1 cut(s) 425
TscAI CASTG 2 cut(s) 73, 469
TspRI CASTG 2 cut(s) 73, 469
XceI RCATGY 1 cut(s) 865
XcmI CCANNNNNNNNNTGG 1 cut(s) 892
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 1 cut(s) 995
Zsp2I ATGCAT 1 cut(s) 1098
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.