Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005537

Physical Location & Seq

Genomic Coordinates Reverse (-)

45241042 .. 45242041

Gene Structure 1000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG278400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGATGATCAGGAAAACCATATGGATGGAGATCATGATGCAATTGCAGAGCCAGGCACGGCATTAGCAGTGGCCGCAGATTCGAAGAATAATAACCAAGAGGATACAGGCAAGAGCAAGGAGGATATCGATGCAACCGGTTCAGTACCATATTACAAGCTCTTCTCCTTTGCTGATTCTATGGATTACCTGTTAATGTCTGTTGGTACGATCAGTGCTATTGGAAACGGATTATGTATGCCTCTAATGACTGTGATCATGGGAGAAGTGATTAACTCTTTCGGAGAAACTCCGAATACCAAAAAAGTGGTTGGTATAGTCTCCAAGGTTGCTCTAAAATATGTTTACTTGGCTTTGGGGGCTGCAGCAGCTGCATTTTTACGTAAGCACTTCAGGTTTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

134

Amino Acids

14.37

Weight (kDa)

4.86

Isoelectric Point (pI)

17.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00610
malus_domestica	MD13G1139000.v1.1 MD17G1284600.v1.1
pyrus_communis	pycom16g11890
rosa_chinensis	RchiOBHm_Chr4g0427741
rosa_multiflora	Rmu_co8181678.1_g000001 Rmu_sc0000066.1_g000023 Rmu_sc0000066.1_g000038 Rmu_sc0003399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367600 Rroxscaffold_5G00369430 Rroxscaffold_5G00369490
rosa_samantha	Rh3AG272000 Rh3AG272500 Rh3DG007700 Rh3DG214800 Rh4AG272500 Rh4AG272600 Rh4AG276400 Rh4BG278200 Rh4BG278300 Rh4BG278400 Rh4BG282100 Rh4BG282300 Rh4BG282700 Rh4CG176800 Rh4CG297700 Rh4CG298200
rosa_wichuraiana	Rw4G023630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	75
AcoI	YGGCCR	1 cut(s)	72
AcuI	CTGAAG	1 cut(s)	376
AfaI	GTAC	2 cut(s)	147, 208
AgeI	ACCGGT	1 cut(s)	137
AjnI	CCWGG	1 cut(s)	52
AluBI	AGCT	2 cut(s)	160, 371
AluI	AGCT	2 cut(s)	160, 371
Alw26I	GTCTC	1 cut(s)	325
AlwNI	CAGNNNCTG	1 cut(s)	371
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	4 cut(s)	362, 365, 368, 371
AsiGI	ACCGGT	1 cut(s)	137
AsuII	TTCGAA	1 cut(s)	83
BbvI	GCAGC	4 cut(s)	349, 358, 377, 380
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	54
BciVI	GTATCC	1 cut(s)	97
BclI	TGATCA	2 cut(s)	7, 255
BcoDI	GTCTC	1 cut(s)	325
BfmI	CTRYAG	1 cut(s)	363
BfuI	GTATCC	1 cut(s)	97
BisI	GCNGC	5 cut(s)	75, 363, 366, 369, 372
BlsI	GCNGC	5 cut(s)	76, 364, 367, 370, 373
Bme1390I	CCNGG	1 cut(s)	54
BmrFI	CCNGG	1 cut(s)	54
BmsI	GCATC	2 cut(s)	28, 121
Bpu14I	TTCGAA	1 cut(s)	83
Bsa29I	ATCGAT	1 cut(s)	129
BsaAI	YACGTR	1 cut(s)	383
BsaBI	GATNNNNATC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	324
BsaWI	WCCGGW	1 cut(s)	137
Bse118I	RCCGGY	1 cut(s)	137
Bse8I	GATNNNNATC	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	54
BseCI	ATCGAT	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	2 cut(s)	10, 31
BseJI	GATNNNNATC	1 cut(s)	30
BseXI	GCAGC	4 cut(s)	349, 358, 377, 380
BshFI	GGCC	1 cut(s)	74
BshTI	ACCGGT	1 cut(s)	137
BshVI	ATCGAT	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	138
BsmAI	GTCTC	1 cut(s)	325
BsnI	GGCC	1 cut(s)	74
Bsp119I	TTCGAA	1 cut(s)	83
Bsp143I	GATC	4 cut(s)	7, 31, 210, 255
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	1 cut(s)	74
BspDI	ATCGAT	1 cut(s)	129
BspHI	TCATGA	1 cut(s)	34
BspMAI	CTGCAG	1 cut(s)	367
BspQI	GCTCTTC	1 cut(s)	167
BspT104I	TTCGAA	1 cut(s)	83
BsrFI	RCCGGY	1 cut(s)	137
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	4 cut(s)	7, 31, 210, 255
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	54
Bst4CI	ACNGT	1 cut(s)	253
Bst6I	CTCTTC	1 cut(s)	167
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstBAI	YACGTR	1 cut(s)	383
BstBI	TTCGAA	1 cut(s)	83
BstF5I	GGATG	2 cut(s)	10, 31
BstKTI	GATC	4 cut(s)	10, 34, 213, 258
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	4 cut(s)	7, 31, 210, 255
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 359, 368, 371
BstNI	CCWGG	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	52
BstSFI	CTRYAG	1 cut(s)	363
BstSNI	TACGTA	1 cut(s)	383
BstV1I	GCAGC	4 cut(s)	349, 358, 377, 380
BstXI	CCANNNNNNTGG	2 cut(s)	26, 307
Bsu15I	ATCGAT	1 cut(s)	129
BsuI	GTATCC	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	74
BsuTUI	ATCGAT	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	10, 31
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	2 cut(s)	75, 220
CaiI	CAGNNNCTG	1 cut(s)	371
CciI	TCATGA	1 cut(s)	34
Cfr10I	RCCGGY	1 cut(s)	137
ClaI	ATCGAT	1 cut(s)	129
Csp6I	GTAC	2 cut(s)	146, 207
CspAI	ACCGGT	1 cut(s)	137
CviAII	CATG	2 cut(s)	35, 259
CviJI	RGCY	6 cut(s)	52, 74, 160, 353, 362, 371
CviKI_1	RGCY	6 cut(s)	52, 74, 160, 353, 362, 371
CviQI	GTAC	2 cut(s)	146, 207
DpnI	GATC	4 cut(s)	9, 33, 212, 257
DpnII	GATC	4 cut(s)	7, 31, 210, 255
EaeI	YGGCCR	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
Eco105I	TACGTA	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	324
Eco32I	GATATC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	52
EcoRV	GATATC	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	2 cut(s)	38, 262
FatI	CATG	2 cut(s)	34, 258
FauNDI	CATATG	1 cut(s)	21
FbaI	TGATCA	2 cut(s)	7, 255
Fnu4HI	GCNGC	5 cut(s)	75, 363, 366, 369, 372
FokI	GGATG	2 cut(s)	17, 38
Fsp4HI	GCNGC	5 cut(s)	75, 363, 366, 369, 372
GluI	GCNGC	5 cut(s)	75, 363, 366, 369, 372
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	1 cut(s)	138
Hin1II	CATG	2 cut(s)	38, 262
HinfI	GANTC	2 cut(s)	80, 176
HpaII	CCGG	1 cut(s)	138
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	2 cut(s)	284, 294
Hpy188III	TCNNGA	2 cut(s)	11, 35
Hpy8I	GTNNAC	1 cut(s)	346
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4IV	ACGT	1 cut(s)	382
HpyCH4V	TGCA	5 cut(s)	41, 47, 134, 365, 374
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 359, 368, 371
HpySE526I	ACGT	1 cut(s)	382
Hsp92II	CATG	2 cut(s)	38, 262
Ksp22I	TGATCA	2 cut(s)	7, 255
Kzo9I	GATC	4 cut(s)	7, 31, 210, 255
LguI	GCTCTTC	1 cut(s)	167
LpnPI	CCDG	6 cut(s)	39, 66, 93, 151, 203, 379
Lsp1109I	GCAGC	4 cut(s)	349, 358, 377, 380
LweI	GCATC	2 cut(s)	28, 121
MaeII	ACGT	1 cut(s)	382
MalI	GATC	4 cut(s)	9, 33, 212, 257
MboI	GATC	4 cut(s)	7, 31, 210, 255
MboII	GAAGA	2 cut(s)	97, 154
MfeI	CAATTG	1 cut(s)	42
MluCI	AATT	1 cut(s)	42
MnlI	CCTC	3 cut(s)	94, 115, 252
MseI	TTAA	2 cut(s)	194, 273
MslI	CAYNNNNRTG	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	54
MunI	CAATTG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	54
MwoI	GCNNNNNNNGC	4 cut(s)	74, 359, 368, 371
NdeI	CATATG	1 cut(s)	21
NdeII	GATC	4 cut(s)	7, 31, 210, 255
NlaIII	CATG	2 cut(s)	38, 262
NspV	TTCGAA	1 cut(s)	83
PagI	TCATGA	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	167
PfeI	GAWTC	2 cut(s)	80, 176
PinAI	ACCGGT	1 cut(s)	137
PkrI	GCNGC	5 cut(s)	76, 364, 367, 370, 373
Ppu21I	YACGTR	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	52
PstI	CTGCAG	1 cut(s)	367
PstNI	CAGNNNCTG	1 cut(s)	371
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	2 cut(s)	147, 208
RsaNI	GTAC	2 cut(s)	146, 207
RseI	CAYNNNNRTG	1 cut(s)	24
SapI	GCTCTTC	1 cut(s)	167
SaqAI	TTAA	2 cut(s)	194, 273
SatI	GCNGC	5 cut(s)	75, 363, 366, 369, 372
Sau3AI	GATC	4 cut(s)	7, 31, 210, 255
ScrFI	CCNGG	1 cut(s)	54
SetI	ASST	6 cut(s)	162, 192, 330, 373, 385, 398
SfaNI	GCATC	2 cut(s)	28, 121
SfcI	CTRYAG	1 cut(s)	363
SfuI	TTCGAA	1 cut(s)	83
SmiMI	CAYNNNNRTG	1 cut(s)	24
SnaBI	TACGTA	1 cut(s)	383
Sse9I	AATT	1 cut(s)	42
SsiI	CCGC	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	52
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	253
TaiI	ACGT	1 cut(s)	385
TaqI	TCGA	2 cut(s)	83, 129
TasI	AATT	1 cut(s)	42
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	80, 176
Tru1I	TTAA	2 cut(s)	194, 273
Tru9I	TTAA	2 cut(s)	194, 273
TscAI	CASTG	2 cut(s)	75, 220
TseI	GCWGC	4 cut(s)	362, 365, 368, 371
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	2 cut(s)	75, 220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.