Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0005537

Physical Location & Seq

Genomic Coordinates Reverse (-)

58817464 .. 58830529

Gene Structure 13066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG272500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGATACTCCACCAAAAGATCAGCAATTCTCTGAAATGTCTTGCTGGATGATCACTGGAGAGAGACAGGCAGCAAGAATAAGAAGTTTATACTTGAAAACAATACTAAGGCAAGACGTTGGCTTTTTTGATACAGAGGCTAACACTGGGGAAATTGTTGGCAGGATGTCGGGGGATACTGTGCTCATTCAGGAAGCAATGGGGGAGAAAGTAGGAAGTTTTATCCAGTTAGTTGCTACATTCATAGGAGGCTTTGTTATAGCATTTGCCAAGGGATGGCGTCTCACCCTTGTCATGCTAACCTCTATTCCCCCTCTTATCTTATCCGGTGCTGTCATGAGCCTCACTATAAGGAAGTTGGCGTCCCGTGGACAAGAGGCATATTCAGTTGGAGCAACTGTAGTAGAGCAGACAATTGGATCTATCAGAACTGTTGCGTCATTTACGGGGGAGAAGCAAGCTATAACTAAGTACAACAACTCCTTAGCTAAAGCTTACAAGTCTGGTGTGCAAGAGGGTTTAGCATCAGGAGTGGGTCTTGGTACGGTTATTCTTACTTTATTCTGCAGTTATGCATTGGCTATATGGTATGGCGGCAAAATGATACTTGAAAAGGGGTACAAAGCAGGAGATGTCATCAATGTGATTTTTGCTGTATTTACTGGTTCTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

224

Amino Acids

24.12

Weight (kDa)

9.05

Isoelectric Point (pI)

31.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	14 - 224	4.3e-54	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00610
malus_domestica	MD13G1139000.v1.1 MD17G1284600.v1.1
pyrus_communis	pycom16g11890
rosa_chinensis	RchiOBHm_Chr4g0427741
rosa_multiflora	Rmu_co8181678.1_g000001 Rmu_sc0000066.1_g000023 Rmu_sc0000066.1_g000038 Rmu_sc0003399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367600 Rroxscaffold_5G00369430 Rroxscaffold_5G00369490
rosa_samantha	Rh3AG272000 Rh3AG272500 Rh3DG007700 Rh3DG214800 Rh4AG272500 Rh4AG272600 Rh4AG276400 Rh4BG278200 Rh4BG278300 Rh4BG278400 Rh4BG282100 Rh4BG282300 Rh4BG282700 Rh4CG176800 Rh4CG297700 Rh4CG298200
rosa_wichuraiana	Rw4G023630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	276
AciI	CCGC	1 cut(s)	594
AclWI	GGATC	1 cut(s)	427
AcyI	GRCGYC	2 cut(s)	280, 362
AfaI	GTAC	3 cut(s)	473, 544, 620
AfiI	CCNNNNNNNGG	1 cut(s)	276
AgsI	TTSAA	2 cut(s)	97, 611
AluBI	AGCT	3 cut(s)	461, 488, 494
AluI	AGCT	3 cut(s)	461, 488, 494
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	2 cut(s)	58, 287
AlwI	GGATC	1 cut(s)	427
ApeKI	GCWGC	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	277
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	1 cut(s)	270
BciVI	GTATCC	1 cut(s)	169
BclI	TGATCA	1 cut(s)	51
BcoDI	GTCTC	2 cut(s)	58, 287
BfmI	CTRYAG	2 cut(s)	399, 565
BfuI	GTATCC	1 cut(s)	169
BisI	GCNGC	2 cut(s)	72, 595
BlsI	GCNGC	2 cut(s)	73, 596
BmrI	ACTGGG	1 cut(s)	156
BmsI	GCATC	1 cut(s)	533
BmuI	ACTGGG	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	78
Bpu10I	CCTNAGC	1 cut(s)	484
BsaHI	GRCGYC	2 cut(s)	280, 362
BsaJI	CCNNGG	2 cut(s)	270, 367
BsaWI	WCCGGW	1 cut(s)	326
BsaXI	ACNNNNNCTCC	6 cut(s)	240, 270, 384, 414, 464, 494
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse1I	ACTGG	4 cut(s)	61, 151, 226, 667
Bse3DI	GCAATG	1 cut(s)	204
BseDI	CCNNGG	2 cut(s)	270, 367
BseGI	GGATG	3 cut(s)	54, 171, 281
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseMI	GCAATG	1 cut(s)	204
BseNI	ACTGG	4 cut(s)	61, 151, 226, 667
BseXI	GCAGC	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	327
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmAI	GTCTC	2 cut(s)	58, 287
BsmBI	CGTCTC	1 cut(s)	287
BsmFI	GGGAC	1 cut(s)	349
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	3 cut(s)	19, 51, 419
BspACI	CCGC	1 cut(s)	594
BspHI	TCATGA	1 cut(s)	336
BspMAI	CTGCAG	1 cut(s)	569
BspPI	GGATC	1 cut(s)	427
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	4 cut(s)	61, 151, 226, 667
BssECI	CCNNGG	2 cut(s)	270, 367
BssMI	GATC	3 cut(s)	19, 51, 419
BssNI	GRCGYC	2 cut(s)	280, 362
BssT1I	CCWWGG	1 cut(s)	270
Bst4CI	ACNGT	4 cut(s)	181, 400, 433, 547
BstACI	GRCGYC	2 cut(s)	280, 362
BstC8I	GCNNGC	1 cut(s)	459
BstDEI	CTNAG	3 cut(s)	107, 468, 484
BstDSI	CCRYGG	1 cut(s)	367
BstF5I	GGATG	3 cut(s)	54, 171, 281
BstKTI	GATC	3 cut(s)	22, 54, 422
BstMAI	GTCTC	2 cut(s)	58, 287
BstMBI	GATC	3 cut(s)	19, 51, 419
BstSFI	CTRYAG	2 cut(s)	399, 565
BstV1I	GCAGC	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	419
BstYI	RGATCY	1 cut(s)	419
BsuI	GTATCC	1 cut(s)	169
BtgI	CCRYGG	1 cut(s)	367
BtsCI	GGATG	3 cut(s)	54, 171, 281
BtsIMutI	CAGTG	2 cut(s)	54, 144
Cac8I	GCNNGC	1 cut(s)	459
CciI	TCATGA	1 cut(s)	336
CseI	GACGC	3 cut(s)	269, 351, 426
Csp6I	GTAC	3 cut(s)	472, 543, 619
CviAII	CATG	2 cut(s)	295, 337
CviJI	RGCY	8 cut(s)	123, 140, 252, 342, 461, 488, 494, 581
CviKI_1	RGCY	8 cut(s)	123, 140, 252, 342, 461, 488, 494, 581
CviQI	GTAC	3 cut(s)	472, 543, 619
DdeI	CTNAG	3 cut(s)	107, 468, 484
DpnI	GATC	3 cut(s)	21, 53, 421
DpnII	GATC	3 cut(s)	19, 51, 419
Eco130I	CCWWGG	1 cut(s)	270
EcoT14I	CCWWGG	1 cut(s)	270
EcoT22I	ATGCAT	1 cut(s)	577
ErhI	CCWWGG	1 cut(s)	270
Esp3I	CGTCTC	1 cut(s)	287
FaeI	CATG	2 cut(s)	298, 340
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	2 cut(s)	294, 336
FbaI	TGATCA	1 cut(s)	51
Fnu4HI	GCNGC	2 cut(s)	72, 595
FokI	GGATG	3 cut(s)	61, 178, 288
Fsp4HI	GCNGC	2 cut(s)	72, 595
GluI	GCNGC	2 cut(s)	72, 595
GsuI	CTGGAG	1 cut(s)	78
HapII	CCGG	1 cut(s)	327
HgaI	GACGC	3 cut(s)	269, 351, 426
Hin1I	GRCGYC	2 cut(s)	280, 362
Hin1II	CATG	2 cut(s)	298, 340
HindIII	AAGCTT	1 cut(s)	492
HpaII	CCGG	1 cut(s)	327
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	1 cut(s)	371
Hpy188I	TCNGA	2 cut(s)	34, 428
Hpy188III	TCNNGA	3 cut(s)	191, 337, 528
Hpy8I	GTNNAC	1 cut(s)	371
HpyCH4III	ACNGT	4 cut(s)	181, 400, 433, 547
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	3 cut(s)	511, 567, 575
HpyF3I	CTNAG	3 cut(s)	107, 468, 484
HpySE526I	ACGT	1 cut(s)	117
Hsp92I	GRCGYC	2 cut(s)	280, 362
Hsp92II	CATG	2 cut(s)	298, 340
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	3 cut(s)	19, 51, 419
LmnI	GCTCC	1 cut(s)	392
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	1 cut(s)	533
MaeII	ACGT	1 cut(s)	117
MalI	GATC	3 cut(s)	21, 53, 421
MboI	GATC	3 cut(s)	19, 51, 419
MfeI	CAATTG	1 cut(s)	414
MflI	RGATCY	1 cut(s)	419
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	3 cut(s)	26, 153, 414
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	7 cut(s)	130, 242, 313, 324, 353, 370, 508
Mph1103I	ATGCAT	1 cut(s)	577
MslI	CAYNNNNRTG	1 cut(s)	641
MspI	CCGG	1 cut(s)	327
MunI	CAATTG	1 cut(s)	414
NdeII	GATC	3 cut(s)	19, 51, 419
NlaIII	CATG	2 cut(s)	298, 340
NsiI	ATGCAT	1 cut(s)	577
PagI	TCATGA	1 cut(s)	336
PflMI	CCANNNNNTGG	1 cut(s)	276
PkrI	GCNGC	2 cut(s)	73, 596
PstI	CTGCAG	1 cut(s)	569
PsuI	RGATCY	1 cut(s)	419
RsaI	GTAC	3 cut(s)	473, 544, 620
RsaNI	GTAC	3 cut(s)	472, 543, 619
RseI	CAYNNNNRTG	1 cut(s)	641
SatI	GCNGC	2 cut(s)	72, 595
Sau3AI	GATC	3 cut(s)	19, 51, 419
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	5 cut(s)	120, 305, 463, 490, 496
SfaNI	GCATC	1 cut(s)	533
SfcI	CTRYAG	2 cut(s)	399, 565
SmiMI	CAYNNNNRTG	1 cut(s)	641
Sse9I	AATT	3 cut(s)	26, 153, 414
SsiI	CCGC	1 cut(s)	594
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	4 cut(s)	181, 400, 433, 547
TaiI	ACGT	1 cut(s)	120
TasI	AATT	3 cut(s)	26, 153, 414
TatI	WGTACW	1 cut(s)	471
TauI	GCSGC	1 cut(s)	597
TscAI	CASTG	2 cut(s)	61, 151
TseI	GCWGC	1 cut(s)	71
TspDTI	ATGAA	1 cut(s)	232
TspRI	CASTG	2 cut(s)	61, 151
Van91I	CCANNNNNTGG	1 cut(s)	276
Zsp2I	ATGCAT	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.