Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000066.1

Orthogroup ID

OG0005537

Physical Location & Seq

Genomic Coordinates Reverse (-)

170948 .. 172932

Gene Structure 1985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000066.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atggcaggacaaagcattgatcttcataacaatggtaatctcctaagacaaggctggagactcaagttgtttgattgtgcagatggttctcgtggaatagttcatgacttagtggctctaaagtatgtttacttggctcttgggggtgctgctgcaacaattctacagatgtcatgctggatgagcactggagagagacaggctgcacgaatacgaagtttatacttgaagaccatactgaggcaagatgtcagcttttttgatcaagaaatcaactctggggaaattcttgggaggatgtcaggtgatactctgctcattaaagaggcaatgggcgagaaggtaggaacttttttccaagtagttgcaacattcataggcagctactttatagcattttttaagggatggcttctcacccttgtcattctatcctctattccccctcttgtcttatctggtgctgtcatgaaccatttcatagtgaaattggcgtcccatggacaagctgcatattcaggaggagcaattgtggttgcatcgctcacaggggagaagcaagctatatctgactacaataactccttgaataaagcttacaagtccggtgtgcaagagggttgggcatctggtttgggttctggtgtacttatgcttttggtattctgtacttatgctttgccgtatggtttggtggaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

233

Amino Acids

25.19

Weight (kDa)

8.39

Isoelectric Point (pI)

36.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00610
malus_domestica	MD13G1139000.v1.1 MD17G1284600.v1.1
pyrus_communis	pycom16g11890
rosa_chinensis	RchiOBHm_Chr4g0427741
rosa_multiflora	Rmu_co8181678.1_g000001 Rmu_sc0000066.1_g000023 Rmu_sc0000066.1_g000038 Rmu_sc0003399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367600 Rroxscaffold_5G00369430 Rroxscaffold_5G00369490
rosa_samantha	Rh3AG272000 Rh3AG272500 Rh3DG007700 Rh3DG214800 Rh4AG272500 Rh4AG272600 Rh4AG276400 Rh4BG278200 Rh4BG278300 Rh4BG278400 Rh4BG282100 Rh4BG282300 Rh4BG282700 Rh4CG176800 Rh4CG297700 Rh4CG298200
rosa_wichuraiana	Rw4G023630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	285
AcyI	GRCGYC	1 cut(s)	494
AfaI	GTAC	2 cut(s)	648, 670
AfiI	CCNNNNNNNGG	1 cut(s)	240
AgsI	TTSAA	2 cut(s)	229, 589
AluBI	AGCT	5 cut(s)	255, 384, 509, 563, 596
AluI	AGCT	5 cut(s)	255, 384, 509, 563, 596
Alw21I	GWGCWC	1 cut(s)	188
Alw26I	GTCTC	2 cut(s)	52, 190
ApeKI	GCWGC	5 cut(s)	149, 152, 203, 381, 509
ApoI	RAATTY	1 cut(s)	285
Asp700I	GAANNNNTTC	1 cut(s)	476
AsuHPI	GGTGA	2 cut(s)	317, 409
BauI	CACGAG	1 cut(s)	90
BbsI	GAAGAC	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	188
BbvI	GCAGC	5 cut(s)	136, 139, 190, 393, 496
BccI	CCATC	2 cut(s)	77, 402
BceAI	ACGGC	1 cut(s)	667
BclI	TGATCA	1 cut(s)	262
BcoDI	GTCTC	2 cut(s)	52, 190
BfmI	CTRYAG	1 cut(s)	164
BisI	GCNGC	5 cut(s)	150, 153, 204, 382, 510
BlsI	GCNGC	5 cut(s)	151, 154, 205, 383, 511
BmsI	GCATC	2 cut(s)	548, 635
BpiI	GAAGAC	1 cut(s)	236
BpmI	CTGGAG	2 cut(s)	76, 210
BpuEI	CTTGAG	1 cut(s)	47
BsaHI	GRCGYC	1 cut(s)	494
BsaJI	CCNNGG	1 cut(s)	499
BsaWI	WCCGGW	1 cut(s)	605
BsaXI	ACNNNNNCTCC	4 cut(s)	516, 546, 566, 596
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse1I	ACTGG	1 cut(s)	193
Bse3DI	GCAATG	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	499
BseGI	GGATG	3 cut(s)	186, 303, 413
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	537
BseXI	GCAGC	5 cut(s)	136, 139, 190, 393, 496
BsgI	GTGCAG	2 cut(s)	99, 189
BsiHKAI	GWGCWC	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	606
BslFI	GGGAC	1 cut(s)	481
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	2 cut(s)	52, 190
BsmFI	GGGAC	1 cut(s)	481
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	2 cut(s)	19, 262
Bsp19I	CCATGG	1 cut(s)	499
BspCNI	CTCAG	1 cut(s)	231
BspHI	TCATGA	2 cut(s)	103, 468
BsrDI	GCAATG	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	499
BssMI	GATC	2 cut(s)	19, 262
BssNI	GRCGYC	1 cut(s)	494
BssSI	CACGAG	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	499
Bst2BI	CACGAG	1 cut(s)	90
BstACI	GRCGYC	1 cut(s)	494
BstC8I	GCNNGC	1 cut(s)	561
BstDEI	CTNAG	3 cut(s)	44, 109, 239
BstDSI	CCRYGG	1 cut(s)	499
BstF5I	GGATG	3 cut(s)	186, 303, 413
BstKTI	GATC	2 cut(s)	22, 265
BstMAI	GTCTC	2 cut(s)	52, 190
BstMBI	GATC	2 cut(s)	19, 262
BstMWI	GCNNNNNNNGC	1 cut(s)	183
BstSFI	CTRYAG	1 cut(s)	164
BstV1I	GCAGC	5 cut(s)	136, 139, 190, 393, 496
BstV2I	GAAGAC	1 cut(s)	236
BtgI	CCRYGG	1 cut(s)	499
BtgZI	GCGATG	1 cut(s)	525
BtsCI	GGATG	3 cut(s)	186, 303, 413
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	1 cut(s)	561
CciI	TCATGA	2 cut(s)	103, 468
CseI	GACGC	1 cut(s)	483
Csp6I	GTAC	2 cut(s)	647, 669
CviAII	CATG	4 cut(s)	104, 174, 469, 500
CviQI	GTAC	2 cut(s)	647, 669
DdeI	CTNAG	3 cut(s)	44, 109, 239
DpnI	GATC	2 cut(s)	21, 264
DpnII	GATC	2 cut(s)	19, 262
Eco130I	CCWWGG	1 cut(s)	499
EcoT14I	CCWWGG	1 cut(s)	499
ErhI	CCWWGG	1 cut(s)	499
FaeI	CATG	4 cut(s)	107, 177, 472, 503
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	4 cut(s)	103, 173, 468, 499
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	5 cut(s)	150, 153, 204, 382, 510
FokI	GGATG	3 cut(s)	193, 310, 420
Fsp4HI	GCNGC	5 cut(s)	150, 153, 204, 382, 510
GluI	GCNGC	5 cut(s)	150, 153, 204, 382, 510
GsuI	CTGGAG	2 cut(s)	76, 210
HapII	CCGG	1 cut(s)	606
HgaI	GACGC	1 cut(s)	483
Hin1I	GRCGYC	1 cut(s)	494
Hin1II	CATG	4 cut(s)	107, 177, 472, 503
HindIII	AAGCTT	1 cut(s)	594
HinfI	GANTC	1 cut(s)	60
HpaII	CCGG	1 cut(s)	606
HphI	GGTGA	2 cut(s)	317, 409
Hpy166II	GTNNAC	2 cut(s)	130, 647
Hpy188I	TCNGA	1 cut(s)	571
Hpy188III	TCNNGA	4 cut(s)	104, 266, 469, 519
Hpy8I	GTNNAC	2 cut(s)	130, 647
HpyAV	CCTTC	1 cut(s)	334
HpyCH4V	TGCA	7 cut(s)	80, 155, 206, 368, 512, 539, 613
HpyF10VI	GCNNNNNNNGC	1 cut(s)	183
HpyF3I	CTNAG	3 cut(s)	44, 109, 239
Hsp92I	GRCGYC	1 cut(s)	494
Hsp92II	CATG	4 cut(s)	107, 177, 472, 503
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	19, 262
LmnI	GCTCC	1 cut(s)	524
Lsp1109I	GCAGC	5 cut(s)	136, 139, 190, 393, 496
LweI	GCATC	2 cut(s)	548, 635
MalI	GATC	2 cut(s)	21, 264
MboI	GATC	2 cut(s)	19, 262
MboII	GAAGA	2 cut(s)	14, 241
MfeI	CAATTG	1 cut(s)	528
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	4 cut(s)	159, 285, 488, 528
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	7 cut(s)	234, 288, 319, 445, 456, 515, 610
MroXI	GAANNNNTTC	1 cut(s)	476
MseI	TTAA	2 cut(s)	321, 402
MslI	CAYNNNNRTG	1 cut(s)	30
MspI	CCGG	1 cut(s)	606
MunI	CAATTG	1 cut(s)	528
MwoI	GCNNNNNNNGC	1 cut(s)	183
NcoI	CCATGG	1 cut(s)	499
NdeII	GATC	2 cut(s)	19, 262
NlaIII	CATG	4 cut(s)	107, 177, 472, 503
PagI	TCATGA	2 cut(s)	103, 468
PdmI	GAANNNNTTC	1 cut(s)	476
PkrI	GCNGC	5 cut(s)	151, 154, 205, 383, 511
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
RsaI	GTAC	2 cut(s)	648, 670
RsaNI	GTAC	2 cut(s)	647, 669
RseI	CAYNNNNRTG	1 cut(s)	30
SaqAI	TTAA	2 cut(s)	321, 402
SatI	GCNGC	5 cut(s)	150, 153, 204, 382, 510
Sau3AI	GATC	2 cut(s)	19, 262
SchI	GAGTC	1 cut(s)	54
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	7 cut(s)	257, 307, 345, 386, 511, 565, 598
SfaNI	GCATC	2 cut(s)	548, 635
SfcI	CTRYAG	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	4 cut(s)	159, 285, 488, 528
StyI	CCWWGG	1 cut(s)	499
TasI	AATT	4 cut(s)	159, 285, 488, 528
TatI	WGTACW	2 cut(s)	646, 668
Tru1I	TTAA	2 cut(s)	321, 402
Tru9I	TTAA	2 cut(s)	321, 402
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	5 cut(s)	149, 152, 203, 381, 509
TspDTI	ATGAA	5 cut(s)	14, 92, 364, 469, 485
TspRI	CASTG	1 cut(s)	193
XapI	RAATTY	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.