Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8181678.1

Orthogroup ID

OG0005537

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 686

Gene Structure 686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8181678.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

gtggctttaaagttcgtctacttggctttgggagctgcagctgcttcatttctacagatgtcttgttggatgatcaccggagagagacaggctgcgagaataagatttttatacttgaaaacaatattgaggcaagacgtaggcttttttgataaagaaactagcactggagaagttattgggaggatgtcaggtgatactgtgctcattcaggaggccatgggagagaaggtaggaacttgtatccagttatttgcaacattctttggaggctttatcatagcctttgttaagggatggcttcttaccctggtcatgctttcttctatccccgct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

112

Amino Acids

12.3

Weight (kDa)

8.73

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00610
malus_domestica	MD13G1139000.v1.1 MD17G1284600.v1.1
pyrus_communis	pycom16g11890
rosa_chinensis	RchiOBHm_Chr4g0427741
rosa_multiflora	Rmu_co8181678.1_g000001 Rmu_sc0000066.1_g000023 Rmu_sc0000066.1_g000038 Rmu_sc0003399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367600 Rroxscaffold_5G00369430 Rroxscaffold_5G00369490
rosa_samantha	Rh3AG272000 Rh3AG272500 Rh3DG007700 Rh3DG214800 Rh4AG272500 Rh4AG272600 Rh4AG276400 Rh4BG278200 Rh4BG278300 Rh4BG278400 Rh4BG282100 Rh4BG282300 Rh4BG282700 Rh4CG176800 Rh4CG297700 Rh4CG298200
rosa_wichuraiana	Rw4G023630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	1 cut(s)	333
AgsI	TTSAA	1 cut(s)	118
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	2 cut(s)	35, 41
AluI	AGCT	2 cut(s)	35, 41
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	79
AoxI	GGCC	1 cut(s)	216
ApeKI	GCWGC	4 cut(s)	35, 38, 41, 92
AsuHPI	GGTGA	2 cut(s)	67, 206
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	4 cut(s)	22, 28, 50, 79
BccI	CCATC	1 cut(s)	291
BciT130I	CCWGG	1 cut(s)	311
BciVI	GTATCC	1 cut(s)	254
BclI	TGATCA	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	2 cut(s)	36, 53
BfuI	GTATCC	1 cut(s)	254
BisI	GCNGC	4 cut(s)	36, 39, 42, 93
BlsI	GCNGC	4 cut(s)	37, 40, 43, 94
Bme1390I	CCNGG	1 cut(s)	311
BmrFI	CCNGG	1 cut(s)	311
BpmI	CTGGAG	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	219, 309
BsaWI	WCCGGW	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bse1I	ACTGG	2 cut(s)	172, 247
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	2 cut(s)	219, 309
BseGI	GGATG	3 cut(s)	75, 192, 302
BseNI	ACTGG	2 cut(s)	172, 247
BseXI	GCAGC	4 cut(s)	22, 28, 50, 79
BshFI	GGCC	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	207
BsiSI	CCGG	1 cut(s)	78
BsmAI	GTCTC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	1 cut(s)	72
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	1 cut(s)	333
BspANI	GGCC	1 cut(s)	218
BspMAI	CTGCAG	1 cut(s)	40
BsrI	ACTGG	2 cut(s)	172, 247
BssECI	CCNNGG	2 cut(s)	219, 309
BssMI	GATC	1 cut(s)	72
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	202
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	3 cut(s)	75, 192, 302
BstKTI	GATC	1 cut(s)	75
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	72
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 41
BstNI	CCWGG	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	309
BstSFI	CTRYAG	2 cut(s)	36, 53
BstV1I	GCAGC	4 cut(s)	22, 28, 50, 79
BsuI	GTATCC	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	218
BtgI	CCRYGG	1 cut(s)	219
BtsCI	GGATG	3 cut(s)	75, 192, 302
BtsIMutI	CAGTG	1 cut(s)	165
CviAII	CATG	2 cut(s)	220, 316
DpnI	GATC	1 cut(s)	74
DpnII	GATC	1 cut(s)	72
DraI	TTTAAA	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	2 cut(s)	223, 319
FaiI	YATR	4 cut(s)	112, 221, 281, 317
FatI	CATG	2 cut(s)	219, 315
FbaI	TGATCA	1 cut(s)	72
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	4 cut(s)	36, 39, 42, 93
FokI	GGATG	3 cut(s)	82, 199, 309
Fsp4HI	GCNGC	4 cut(s)	36, 39, 42, 93
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	4 cut(s)	36, 39, 42, 93
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	218
HapII	CCGG	1 cut(s)	78
Hin1II	CATG	2 cut(s)	223, 319
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	2 cut(s)	67, 206
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	2 cut(s)	38, 257
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 41
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	223, 319
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	72
LmnI	GCTCC	1 cut(s)	32
LpnPI	CCDG	8 cut(s)	74, 91, 153, 177, 197, 260, 296, 323
Lsp1109I	GCAGC	4 cut(s)	22, 28, 50, 79
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	138
MalI	GATC	1 cut(s)	74
MboI	GATC	1 cut(s)	72
MboII	GAAGA	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	207
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	4 cut(s)	123, 177, 208, 263
MseI	TTAA	2 cut(s)	8, 291
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	311
MwoI	GCNNNNNNNGC	2 cut(s)	32, 41
NcoI	CCATGG	1 cut(s)	219
NdeII	GATC	1 cut(s)	72
NlaIII	CATG	2 cut(s)	223, 319
PkrI	GCNGC	4 cut(s)	37, 40, 43, 94
Psp6I	CCWGG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	309
PstI	CTGCAG	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	41
SaqAI	TTAA	2 cut(s)	8, 291
SatI	GCNGC	4 cut(s)	36, 39, 42, 93
Sau3AI	GATC	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	311
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	5 cut(s)	37, 43, 141, 196, 234
SfcI	CTRYAG	2 cut(s)	36, 53
SsiI	CCGC	1 cut(s)	333
SspI	AATATT	1 cut(s)	126
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	309
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	1 cut(s)	141
Tru1I	TTAA	2 cut(s)	8, 291
Tru9I	TTAA	2 cut(s)	8, 291
TscAI	CASTG	1 cut(s)	172
TseI	GCWGC	4 cut(s)	35, 38, 41, 92
TspDTI	ATGAA	1 cut(s)	36
TspRI	CASTG	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.