Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005537

Physical Location & Seq

Genomic Coordinates Forward (+)

45722385 .. 45722762

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG282700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCTGAGGAGAATCCTTCAGATGGAGATGCAATAACCGAGCAAGAAACTCCAACAAATAGCCATCCAACAGTGATGGTGGGTTCCAACGAAAACAGACTAGATACAAGCAAGAGCAAGGAGGATGGAACTAAAACAGTTCCACTCTACAAACTTTTCTCTTTTGCTGATTCCATGGATTACCTGCTAATGTCTGTTGGTACAATCAGCGCTATTGGTAATGGACTCTGTATGCCTCTAATGGCCATAGTCTTTGGAGATCTACTTACTTCTTTTTTAGAAACTGGGAATAACAAGAGAGTGGCTGATGCAGTTTCCAAGGTGAGTCTTCTAGGACCAAAACCAATAGTCATCACTGGTGATGGAACATCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

125

Amino Acids

13.23

Weight (kDa)

4.47

Isoelectric Point (pI)

24.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00610
malus_domestica	MD13G1139000.v1.1 MD17G1284600.v1.1
pyrus_communis	pycom16g11890
rosa_chinensis	RchiOBHm_Chr4g0427741
rosa_multiflora	Rmu_co8181678.1_g000001 Rmu_sc0000066.1_g000023 Rmu_sc0000066.1_g000038 Rmu_sc0003399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367600 Rroxscaffold_5G00369430 Rroxscaffold_5G00369490
rosa_samantha	Rh3AG272000 Rh3AG272500 Rh3DG007700 Rh3DG214800 Rh4AG272500 Rh4AG272600 Rh4AG276400 Rh4BG278200 Rh4BG278300 Rh4BG278400 Rh4BG282100 Rh4BG282300 Rh4BG282700 Rh4CG176800 Rh4CG297700 Rh4CG298200
rosa_wichuraiana	Rw4G023630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	192
AcoI	YGGCCR	1 cut(s)	243
AfaI	GTAC	1 cut(s)	202
AfeI	AGCGCT	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	23
Aor51HI	AGCGCT	1 cut(s)	211
AoxI	GGCC	1 cut(s)	243
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	335
AsuHPI	GGTGA	2 cut(s)	334, 371
AvaII	GGWCC	1 cut(s)	335
BalI	TGGCCA	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	320
BbvCI	CCTCAGC	1 cut(s)	6
BccI	CCATC	5 cut(s)	17, 70, 72, 119, 356
BfaI	CTAG	2 cut(s)	101, 332
BfoI	RGCGCY	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	192
BglII	AGATCT	1 cut(s)	259
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	1 cut(s)	85
BmrI	ACTGGG	1 cut(s)	294
BmsI	GCATC	2 cut(s)	19, 298
BmuI	ACTGGG	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	320
Bpu10I	CCTNAGC	1 cut(s)	6
BsaJI	CCNNGG	2 cut(s)	174, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse1I	ACTGG	2 cut(s)	289, 361
BseDI	CCNNGG	2 cut(s)	174, 318
BseGI	GGATG	2 cut(s)	64, 130
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseNI	ACTGG	2 cut(s)	289, 361
BseRI	GAGGAG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	23
BsnI	GGCC	1 cut(s)	245
Bsp143I	GATC	1 cut(s)	259
Bsp19I	CCATGG	1 cut(s)	174
BspANI	GGCC	1 cut(s)	245
BspLI	GGNNCC	1 cut(s)	85
BspMI	ACCTGC	1 cut(s)	192
BsrI	ACTGG	2 cut(s)	289, 361
BssECI	CCNNGG	2 cut(s)	174, 318
BssMI	GATC	1 cut(s)	259
BssT1I	CCWWGG	2 cut(s)	174, 318
Bst4CI	ACNGT	2 cut(s)	73, 139
BstDEI	CTNAG	1 cut(s)	6
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	2 cut(s)	64, 130
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	259
BstV2I	GAAGAC	1 cut(s)	320
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BsuRI	GGCC	1 cut(s)	245
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	64, 130
BtsIMutI	CAGTG	2 cut(s)	78, 354
BveI	ACCTGC	1 cut(s)	192
CfoI	GCGC	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	335
Csp6I	GTAC	1 cut(s)	201
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	4 cut(s)	5, 63, 245, 305
CviKI_1	RGCY	4 cut(s)	5, 63, 245, 305
CviQI	GTAC	1 cut(s)	201
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
EaeI	YGGCCR	1 cut(s)	243
Eco130I	CCWWGG	2 cut(s)	174, 318
Eco47I	GGWCC	1 cut(s)	335
Eco47III	AGCGCT	1 cut(s)	211
EcoT14I	CCWWGG	2 cut(s)	174, 318
ErhI	CCWWGG	2 cut(s)	174, 318
FaeI	CATG	1 cut(s)	178
FaiI	YATR	5 cut(s)	176, 233, 248, 374, 376
FatI	CATG	1 cut(s)	174
FokI	GGATG	2 cut(s)	51, 137
FspBI	CTAG	2 cut(s)	101, 332
GlaI	GCGC	1 cut(s)	211
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	245
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	1 cut(s)	178
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HinfI	GANTC	4 cut(s)	13, 170, 225, 325
HphI	GGTGA	2 cut(s)	334, 371
Hpy188I	TCNGA	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	27
HpyCH4III	ACNGT	2 cut(s)	73, 139
HpyCH4V	TGCA	2 cut(s)	32, 311
HpyF3I	CTNAG	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	178
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	1 cut(s)	259
LpnPI	CCDG	3 cut(s)	197, 270, 342
LweI	GCATC	2 cut(s)	19, 298
MaeI	CTAG	2 cut(s)	101, 332
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	1 cut(s)	320
MflI	RGATCY	1 cut(s)	259
MlsI	TGGCCA	1 cut(s)	245
MluNI	TGGCCA	1 cut(s)	245
MlyI	GAGTC	2 cut(s)	219, 334
MmeI	TCCRAC	3 cut(s)	77, 92, 111
MnlI	CCTC	2 cut(s)	115, 246
Mox20I	TGGCCA	1 cut(s)	245
MscI	TGGCCA	1 cut(s)	245
Msp20I	TGGCCA	1 cut(s)	245
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	1 cut(s)	85
PfeI	GAWTC	2 cut(s)	13, 170
PleI	GAGTC	2 cut(s)	219, 333
PpsI	GAGTC	2 cut(s)	219, 333
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	259
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	1 cut(s)	335
SchI	GAGTC	2 cut(s)	219, 334
SetI	ASST	2 cut(s)	186, 324
SfaNI	GCATC	2 cut(s)	19, 298
SinI	GGWCC	1 cut(s)	335
SspMI	CTAG	2 cut(s)	101, 332
StyI	CCWWGG	2 cut(s)	174, 318
TaaI	ACNGT	2 cut(s)	73, 139
TfiI	GAWTC	2 cut(s)	13, 170
TscAI	CASTG	2 cut(s)	78, 361
TspRI	CASTG	2 cut(s)	78, 361
VpaK11BI	GGWCC	1 cut(s)	335
XspI	CTAG	2 cut(s)	101, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.