Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0005537

Physical Location & Seq

Genomic Coordinates Reverse (-)

10705531 .. 10707099

Gene Structure 1569 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1139000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGCGGTGGAAAATCCTGTGGATGGATATGTAATGAAGAAGCAGGTCACGGCAACATTAAAAGGACACTCGACAGTCCAGGATTCCAAAAACAGCAAGCAAGATTCGAGCGAGAACAAGGAGGATGGCACGAAAACAGTACCATATTACAAGCTTTTCTCCTTTGCGGATACCTTGGATTACATGTTAATGTCTGTTGGTACAATCAGTGCCATTGGAAATGGGCTCTGTACGCCTCTAATGACCGTAATCTTTGGAGAGGTGATTAATTCTTTTGGAAGAACTGGGAATACCAAAGAAGTGGTGGATGCAGTTTCCAAGGTGGCTCTAAAGAATGTTTACTTGGCTATAGGTGCTGGTGTTGCTGCATTTCTACAGGTATCTTGCTGGATGGTTACTGGAGAAAGACAAGCTGCACGAATACGAAGTTTGTATCTGAAAACAATATTGAGGCAAGATGTTGGCTTTTTCGATACAGAAACGAACACTGGGGAAATTGTTAAGAGAATGTCAGGTGATACTGTGCTCATTCAAGAGGCCATGGGCGAGAAGGTAGGAACTGTTATCCAGTTAATTGCAACATTTATTGGAGGCTTTGTTATAGCATTTGTTAAGGGATGGCTTCTCGCCCTTGTCATGCTATCTTCCATTCCCCCTCTTGTCCTTGCTGGTGCCGTCGTGGCCATCCTTGTATCGAAATTGGCAACCCGTGGACAAGCTGCTTATTCAGTGGCAGCAACTGTGGTGGAGCAAACGATTGTTTCAATTAGAACTGTTGCATCATTCACAGGAGAAAAACAAGCTATATCTAATTACAACAATTCCTTAATTGATGCTTACAACTCTGCTGTGCTAGAAGGTTTGGCATCTGGGTGTGGAATTGGTTCGGTTATGCTTATTATGATGTGTAGTTATGCTTTGGCTATATGGTTTGGAGGAAAGATGATTCTTGAAAGAGGATATACAGGAGGAGAAGTAATAAGCGTACTTTTCGCGGTATTGACTGGCTCCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

339

Amino Acids

35.95

Weight (kDa)

7.57

Isoelectric Point (pI)

25.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	66 - 338	2.9e-62	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00610
malus_domestica	MD13G1139000.v1.1 MD17G1284600.v1.1
pyrus_communis	pycom16g11890
rosa_chinensis	RchiOBHm_Chr4g0427741
rosa_multiflora	Rmu_co8181678.1_g000001 Rmu_sc0000066.1_g000023 Rmu_sc0000066.1_g000038 Rmu_sc0003399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367600 Rroxscaffold_5G00369430 Rroxscaffold_5G00369490
rosa_samantha	Rh3AG272000 Rh3AG272500 Rh3DG007700 Rh3DG214800 Rh4AG272500 Rh4AG272600 Rh4AG276400 Rh4BG278200 Rh4BG278300 Rh4BG278400 Rh4BG282100 Rh4BG282300 Rh4BG282700 Rh4CG176800 Rh4CG297700 Rh4CG298200
rosa_wichuraiana	Rw4G023630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	34
AccB1I	GGYRCC	1 cut(s)	671
AccII	CGCG	1 cut(s)	995
AciI	CCGC	3 cut(s)	5, 167, 995
AcoI	YGGCCR	1 cut(s)	681
AfaI	GTAC	4 cut(s)	141, 202, 232, 987
AfiI	CCNNNNNNNGG	1 cut(s)	23
AflIII	ACRYGT	1 cut(s)	183
AgsI	TTSAA	3 cut(s)	533, 765, 953
AjnI	CCWGG	1 cut(s)	78
AjuI	GAANNNNNNNTTGG	2 cut(s)	326, 358
AluBI	AGCT	4 cut(s)	154, 413, 719, 803
AluI	AGCT	4 cut(s)	154, 413, 719, 803
Alw21I	GWGCWC	1 cut(s)	528
AlwNI	CAGNNNCTG	1 cut(s)	740
AoxI	GGCC	2 cut(s)	537, 681
ApeKI	GCWGC	4 cut(s)	365, 413, 719, 734
AseI	ATTAAT	1 cut(s)	267
Asp700I	GAANNNNTTC	1 cut(s)	883
AsuHPI	GGTGA	2 cut(s)	274, 527
BalI	TGGCCA	1 cut(s)	683
BanI	GGYRCC	1 cut(s)	671
BanII	GRGCYC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	528
BbvI	GCAGC	4 cut(s)	352, 400, 706, 746
BccI	CCATC	5 cut(s)	17, 119, 385, 612, 692
BceAI	ACGGC	2 cut(s)	66, 659
BciT130I	CCWGG	1 cut(s)	80
BciVI	GTATCC	1 cut(s)	163
BfaI	CTAG	1 cut(s)	854
BfmI	CTRYAG	2 cut(s)	348, 374
BfuAI	ACCTGC	1 cut(s)	34
BfuI	GTATCC	1 cut(s)	163
BglI	GCCNNNNNGGC	1 cut(s)	680
BisI	GCNGC	4 cut(s)	366, 414, 720, 735
BlsI	GCNGC	4 cut(s)	367, 415, 721, 736
Bme1390I	CCNGG	1 cut(s)	80
BmiI	GGNNCC	2 cut(s)	673, 1009
BmrFI	CCNGG	1 cut(s)	80
BmrI	ACTGGG	2 cut(s)	294, 498
BmsI	GCATC	4 cut(s)	298, 788, 823, 875
BmuI	ACTGGG	2 cut(s)	294, 498
BpmI	CTGGAG	1 cut(s)	420
BsaJI	CCNNGG	4 cut(s)	174, 318, 540, 709
BsaXI	ACNNNNNCTCC	4 cut(s)	582, 612, 960, 990
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse1I	ACTGG	5 cut(s)	289, 403, 493, 568, 1009
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	4 cut(s)	174, 318, 540, 709
BseGI	GGATG	6 cut(s)	28, 130, 313, 396, 623, 684
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseNI	ACTGG	5 cut(s)	289, 403, 493, 568, 1009
BseRI	GAGGAG	1 cut(s)	984
BseXI	GCAGC	4 cut(s)	352, 400, 706, 746
BsgI	GTGCAG	1 cut(s)	399
Bsh1236I	CGCG	1 cut(s)	995
BshFI	GGCC	2 cut(s)	539, 683
BshNI	GGYRCC	1 cut(s)	671
BsiHKAI	GWGCWC	1 cut(s)	528
BslI	CCNNNNNNNGG	1 cut(s)	23
BsnI	GGCC	2 cut(s)	539, 683
Bsp1286I	GDGCHC	2 cut(s)	228, 528
Bsp19I	CCATGG	1 cut(s)	540
BspACI	CCGC	3 cut(s)	5, 167, 995
BspANI	GGCC	2 cut(s)	539, 683
BspFNI	CGCG	1 cut(s)	995
BspLI	GGNNCC	2 cut(s)	673, 1009
BspMI	ACCTGC	1 cut(s)	34
BspT107I	GGYRCC	1 cut(s)	671
BsrI	ACTGG	5 cut(s)	289, 403, 493, 568, 1009
BssECI	CCNNGG	4 cut(s)	174, 318, 540, 709
BssT1I	CCWWGG	3 cut(s)	174, 318, 540
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	7 cut(s)	76, 139, 247, 523, 562, 742, 775
BstC8I	GCNNGC	1 cut(s)	98
BstDSI	CCRYGG	2 cut(s)	540, 709
BstF5I	GGATG	6 cut(s)	28, 130, 313, 396, 623, 684
BstFNI	CGCG	1 cut(s)	995
BstMWI	GCNNNNNNNGC	4 cut(s)	232, 353, 362, 680
BstNI	CCWGG	1 cut(s)	80
BstNSI	RCATGY	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	78
BstSFI	CTRYAG	2 cut(s)	348, 374
BstUI	CGCG	1 cut(s)	995
BstV1I	GCAGC	4 cut(s)	352, 400, 706, 746
BstXI	CCANNNNNNTGG	1 cut(s)	301
BsuI	GTATCC	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	539, 683
BtgI	CCRYGG	2 cut(s)	540, 709
BtsCI	GGATG	6 cut(s)	28, 130, 313, 396, 623, 684
BtsIMutI	CAGTG	3 cut(s)	214, 486, 735
BveI	ACCTGC	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	98
CaiI	CAGNNNCTG	1 cut(s)	740
Csp6I	GTAC	4 cut(s)	140, 201, 231, 986
CspCI	CAANNNNNGTGG	2 cut(s)	726, 761
CviAII	CATG	3 cut(s)	184, 541, 637
CviQI	GTAC	4 cut(s)	140, 201, 231, 986
EaeI	YGGCCR	1 cut(s)	681
Eco130I	CCWWGG	3 cut(s)	174, 318, 540
Eco24I	GRGCYC	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	78
EcoT14I	CCWWGG	3 cut(s)	174, 318, 540
EcoT38I	GRGCYC	1 cut(s)	228
ErhI	CCWWGG	3 cut(s)	174, 318, 540
FaeI	CATG	3 cut(s)	187, 544, 640
FatI	CATG	3 cut(s)	183, 540, 636
Fnu4HI	GCNGC	4 cut(s)	366, 414, 720, 735
FokI	GGATG	6 cut(s)	35, 137, 320, 403, 630, 671
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	4 cut(s)	366, 414, 720, 735
FspBI	CTAG	1 cut(s)	854
GluI	GCNGC	4 cut(s)	366, 414, 720, 735
GsuI	CTGGAG	1 cut(s)	420
HaeIII	GGCC	2 cut(s)	539, 683
Hin1II	CATG	3 cut(s)	187, 544, 640
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	3 cut(s)	83, 104, 946
HphI	GGTGA	2 cut(s)	274, 527
Hpy166II	GTNNAC	2 cut(s)	340, 713
Hpy188I	TCNGA	1 cut(s)	438
Hpy188III	TCNNGA	2 cut(s)	533, 950
Hpy8I	GTNNAC	2 cut(s)	340, 713
Hpy99I	CGWCG	1 cut(s)	680
HpyAV	CCTTC	2 cut(s)	544, 851
HpyCH4III	ACNGT	7 cut(s)	76, 139, 247, 523, 562, 742, 775
HpyCH4V	TGCA	5 cut(s)	311, 368, 416, 578, 779
HpyF10VI	GCNNNNNNNGC	4 cut(s)	232, 353, 362, 680
Hsp92II	CATG	3 cut(s)	187, 544, 640
LmnI	GCTCC	2 cut(s)	748, 1013
Lsp1109I	GCAGC	4 cut(s)	352, 400, 706, 746
LweI	GCATC	4 cut(s)	298, 788, 823, 875
MaeI	CTAG	1 cut(s)	854
MaeIII	GTNAC	2 cut(s)	46, 394
MboII	GAAGA	3 cut(s)	49, 291, 636
MhlI	GDGCHC	2 cut(s)	228, 528
MlsI	TGGCCA	1 cut(s)	683
MluCI	AATT	9 cut(s)	268, 495, 573, 698, 765, 811, 820, 828, 879
MluNI	TGGCCA	1 cut(s)	683
Mox20I	TGGCCA	1 cut(s)	683
MroXI	GAANNNNTTC	1 cut(s)	883
MscI	TGGCCA	1 cut(s)	683
MseI	TTAA	7 cut(s)	59, 188, 267, 501, 572, 612, 827
MslI	CAYNNNNRTG	2 cut(s)	188, 871
Msp20I	TGGCCA	1 cut(s)	683
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
MvnI	CGCG	1 cut(s)	995
MwoI	GCNNNNNNNGC	4 cut(s)	232, 353, 362, 680
NcoI	CCATGG	1 cut(s)	540
NlaIII	CATG	3 cut(s)	187, 544, 640
NlaIV	GGNNCC	2 cut(s)	673, 1009
NmuCI	GTSAC	1 cut(s)	46
NspI	RCATGY	1 cut(s)	187
PciI	ACATGT	1 cut(s)	183
PdmI	GAANNNNTTC	1 cut(s)	883
PfeI	GAWTC	3 cut(s)	83, 104, 946
PfoI	TCCNGGA	1 cut(s)	78
PkrI	GCNGC	4 cut(s)	367, 415, 721, 736
PscI	ACATGT	1 cut(s)	183
PshBI	ATTAAT	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	2 cut(s)	673, 1009
PsrI	GAACNNNNNNTAC	2 cut(s)	274, 306
PstNI	CAGNNNCTG	1 cut(s)	740
RsaI	GTAC	4 cut(s)	141, 202, 232, 987
RsaNI	GTAC	4 cut(s)	140, 201, 231, 986
RseI	CAYNNNNRTG	2 cut(s)	188, 871
SaqAI	TTAA	7 cut(s)	59, 188, 267, 501, 572, 612, 827
SatI	GCNGC	4 cut(s)	366, 414, 720, 735
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	2 cut(s)	228, 528
SfaNI	GCATC	4 cut(s)	298, 788, 823, 875
SfcI	CTRYAG	2 cut(s)	348, 374
SmiMI	CAYNNNNRTG	2 cut(s)	188, 871
Sse9I	AATT	9 cut(s)	268, 495, 573, 698, 765, 811, 820, 828, 879
SsiI	CCGC	3 cut(s)	5, 167, 995
SspI	AATATT	1 cut(s)	447
SspMI	CTAG	1 cut(s)	854
StyD4I	CCNGG	1 cut(s)	78
StyI	CCWWGG	3 cut(s)	174, 318, 540
TaaI	ACNGT	7 cut(s)	76, 139, 247, 523, 562, 742, 775
TaqI	TCGA	4 cut(s)	71, 107, 471, 695
TasI	AATT	9 cut(s)	268, 495, 573, 698, 765, 811, 820, 828, 879
TfiI	GAWTC	3 cut(s)	83, 104, 946
Tru1I	TTAA	7 cut(s)	59, 188, 267, 501, 572, 612, 827
Tru9I	TTAA	7 cut(s)	59, 188, 267, 501, 572, 612, 827
TscAI	CASTG	3 cut(s)	214, 493, 735
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	4 cut(s)	365, 413, 719, 734
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	1 cut(s)	50
TspRI	CASTG	3 cut(s)	214, 493, 735
VspI	ATTAAT	1 cut(s)	267
XceI	RCATGY	1 cut(s)	187
XcmI	CCANNNNNNNNNTGG	1 cut(s)	301
XmnI	GAANNNNTTC	1 cut(s)	883
XspI	CTAG	1 cut(s)	854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.