Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005537

Physical Location & Seq

Genomic Coordinates Forward (+)

51247072 .. 51249059

Gene Structure 1988 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00369430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGATATTTGCCCAAATTACCCACATCCTAATGAATGTGGGAGCAACTAAGCAGAAAAAAGCAAGAGGGCTAGAATGGTATTTCAATCGTGATACTGCCTGTAGGTTGATATGTTTGCTTATAAAGCAATGCTTGCGTGGAAGTACAACAAATTCATCACCCATTTCCAGCTGTGATCTTATCACTCAAGTGGGAAGCATGGCTGAGGAGAATCCTTCAGATGGAGATGTAATCACCAAGCAATACACTGCACCAAATAGCCGCTCAGCAGTGGCGGCGGTTTCCAGAGAATGTGAACAAAATATAAGCAAGAGCAAGGAGGATGGAACAAATACAGTACCATATTACAAGCTTTTCTCCTTTGCTGACTCCCTGGATTACCTGTTAATGTCTGTTGGTACAATCAGCGCCATTGGAAATGGACTCTGTATGCCTCTAATGACCATTGTCATGGGCGATGTGATTGATTCATTTGGAGAAACTAGGAACATCAAGGAAGTGTCTAATGCAGTTTCCAAGGTGGCTTTGAAATTCGTTTACTTGGCTCTGGGGGCTGCTGCTGCATCATTTCTACAGATGTCTTGCTGGATGATCACTGGAGAGAGACAGGCTGCACGAATACGAAGTTTATACTTGAAAACCATACTAAGGCAAGATGTCGGCTTCTTTGATCAAGAAATCAACTCTGGGGAAATTGTTGGAAGGATGTCAGGTGATACTGTGCTCATTCAAGAGGCAATGGGTGAGAAGGTAGGAAGTTTCATCCAGTTAGTTGCAACGTTCATAGGTGGCTTTGGTATAGCATTTTTTAAGGGATCACTTCTCACCCTGGTCATGCTATCCTCTATTCCCGCTCTAGTCTTATCTACTGCTGTCCTGAACCATTTCATAGTCAAATTGGCGTCCCATGGACAAGCTGCAAATTCAGGAGGAGCAAATGTGGTAGACGAGACAATTAGTTCAATAAGAACTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

325

Amino Acids

35.02

Weight (kDa)

7.55

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	132 - 325	1.9e-40	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00610
malus_domestica	MD13G1139000.v1.1 MD17G1284600.v1.1
pyrus_communis	pycom16g11890
rosa_chinensis	RchiOBHm_Chr4g0427741
rosa_multiflora	Rmu_co8181678.1_g000001 Rmu_sc0000066.1_g000023 Rmu_sc0000066.1_g000038 Rmu_sc0003399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367600 Rroxscaffold_5G00369430 Rroxscaffold_5G00369490
rosa_samantha	Rh3AG272000 Rh3AG272500 Rh3DG007700 Rh3DG214800 Rh4AG272500 Rh4AG272600 Rh4AG276400 Rh4BG278200 Rh4BG278300 Rh4BG278400 Rh4BG282100 Rh4BG282300 Rh4BG282700 Rh4CG176800 Rh4CG297700 Rh4CG298200
rosa_wichuraiana	Rw4G023630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	122
AccBSI	CCGCTC	2 cut(s)	264, 854
AccI	GTMKAC	1 cut(s)	945
AciI	CCGC	4 cut(s)	262, 275, 278, 852
AclI	AACGTT	1 cut(s)	779
AclWI	GGATC	1 cut(s)	823
AcsI	RAATTY	3 cut(s)	151, 530, 922
AcuI	CTGAAG	1 cut(s)	201
AcyI	GRCGYC	1 cut(s)	902
AfaI	GTAC	3 cut(s)	145, 339, 400
AfiI	CCNNNNNNNGG	2 cut(s)	221, 648
AgsI	TTSAA	5 cut(s)	85, 529, 637, 731, 963
AjnI	CCWGG	2 cut(s)	372, 828
AleI	CACNNNNGTG	1 cut(s)	188
AluBI	AGCT	3 cut(s)	171, 352, 917
AluI	AGCT	3 cut(s)	171, 352, 917
Alw21I	GWGCWC	1 cut(s)	726
Alw26I	GTCTC	2 cut(s)	598, 944
AlwI	GGATC	1 cut(s)	823
ApeKI	GCWGC	5 cut(s)	554, 557, 560, 611, 917
ApoI	RAATTY	3 cut(s)	151, 530, 922
Asp700I	GAANNNNTTC	1 cut(s)	884
AspLEI	GCGC	1 cut(s)	410
AsuHPI	GGTGA	5 cut(s)	150, 226, 725, 755, 817
Bbv12I	GWGCWC	1 cut(s)	726
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	5 cut(s)	541, 544, 547, 598, 904
BccI	CCATC	2 cut(s)	215, 317
BciT130I	CCWGG	2 cut(s)	374, 830
BclI	TGATCA	2 cut(s)	591, 670
BcoDI	GTCTC	2 cut(s)	598, 944
BfaI	CTAG	3 cut(s)	71, 483, 857
BfmI	CTRYAG	2 cut(s)	100, 572
BfoI	RGCGCY	1 cut(s)	411
BisI	GCNGC	7 cut(s)	262, 276, 555, 558, 561, 612, 918
BlpI	GCTNAGC	1 cut(s)	265
BlsI	GCNGC	7 cut(s)	263, 277, 556, 559, 562, 613, 919
Bme1390I	CCNGG	2 cut(s)	374, 830
BmrFI	CCNGG	2 cut(s)	374, 830
BmsI	GCATC	1 cut(s)	572
BoxI	GACNNNNGTC	1 cut(s)	446
BpmI	CTGGAG	1 cut(s)	618
Bpu10I	CCTNAGC	1 cut(s)	204
Bpu1102I	GCTNAGC	1 cut(s)	265
BpuEI	CTTGAG	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	902
BsaJI	CCNNGG	4 cut(s)	372, 516, 828, 907
BsaXI	ACNNNNNCTCC	2 cut(s)	924, 954
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 648
Bse1I	ACTGG	2 cut(s)	601, 766
Bse3DI	GCAATG	2 cut(s)	134, 744
BseBI	CCWGG	2 cut(s)	374, 830
BseDI	CCNNGG	4 cut(s)	372, 516, 828, 907
BseGI	GGATG	5 cut(s)	24, 328, 594, 711, 762
BseLI	CCNNNNNNNGG	2 cut(s)	221, 648
BseMI	GCAATG	2 cut(s)	134, 744
BseMII	CTCAG	2 cut(s)	195, 279
BseNI	ACTGG	2 cut(s)	601, 766
BseRI	GAGGAG	2 cut(s)	221, 945
BseXI	GCAGC	5 cut(s)	541, 544, 547, 598, 904
BsgI	GTGCAG	2 cut(s)	234, 597
BsiHKAI	GWGCWC	1 cut(s)	726
BslFI	GGGAC	1 cut(s)	889
BslI	CCNNNNNNNGG	2 cut(s)	221, 648
BsmAI	GTCTC	2 cut(s)	598, 944
BsmFI	GGGAC	1 cut(s)	889
Bsp1286I	GDGCHC	1 cut(s)	726
Bsp143I	GATC	4 cut(s)	175, 591, 670, 815
Bsp1720I	GCTNAGC	1 cut(s)	265
Bsp19I	CCATGG	1 cut(s)	907
BspACI	CCGC	4 cut(s)	262, 275, 278, 852
BspCNI	CTCAG	2 cut(s)	196, 278
BspPI	GGATC	1 cut(s)	823
BsrBI	CCGCTC	2 cut(s)	264, 854
BsrDI	GCAATG	2 cut(s)	134, 744
BsrI	ACTGG	2 cut(s)	601, 766
BssECI	CCNNGG	4 cut(s)	372, 516, 828, 907
BssMI	GATC	4 cut(s)	175, 591, 670, 815
BssNI	GRCGYC	1 cut(s)	902
BssT1I	CCWWGG	2 cut(s)	516, 907
Bst2UI	CCWGG	2 cut(s)	374, 830
Bst4CI	ACNGT	3 cut(s)	337, 721, 973
BstACI	GRCGYC	1 cut(s)	902
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	4 cut(s)	48, 204, 265, 647
BstDSI	CCRYGG	1 cut(s)	907
BstF5I	GGATG	5 cut(s)	24, 328, 594, 711, 762
BstH2I	RGCGCY	1 cut(s)	411
BstHHI	GCGC	1 cut(s)	410
BstKTI	GATC	4 cut(s)	178, 594, 673, 818
BstMAI	GTCTC	2 cut(s)	598, 944
BstMBI	GATC	4 cut(s)	175, 591, 670, 815
BstMWI	GCNNNNNNNGC	5 cut(s)	124, 133, 275, 551, 560
BstNI	CCWGG	2 cut(s)	374, 830
BstPAI	GACNNNNGTC	1 cut(s)	446
BstSCI	CCNGG	2 cut(s)	372, 828
BstSFI	CTRYAG	2 cut(s)	100, 572
BstV1I	GCAGC	5 cut(s)	541, 544, 547, 598, 904
BstXI	CCANNNNNNTGG	1 cut(s)	451
BtgI	CCRYGG	1 cut(s)	907
BtgZI	GCGATG	1 cut(s)	471
BtsCI	GGATG	5 cut(s)	24, 328, 594, 711, 762
BtsI	GCAGTG	2 cut(s)	246, 276
BtsIMutI	CAGTG	3 cut(s)	246, 276, 594
Cac8I	GCNNGC	1 cut(s)	134
CfoI	GCGC	1 cut(s)	410
CseI	GACGC	1 cut(s)	891
Csp6I	GTAC	3 cut(s)	144, 338, 399
CviAII	CATG	4 cut(s)	199, 451, 835, 908
CviQI	GTAC	3 cut(s)	144, 338, 399
DdeI	CTNAG	4 cut(s)	48, 204, 265, 647
DpnI	GATC	4 cut(s)	177, 593, 672, 817
DpnII	GATC	4 cut(s)	175, 591, 670, 815
Eco130I	CCWWGG	2 cut(s)	516, 907
Eco57I	CTGAAG	1 cut(s)	201
EcoRII	CCWGG	2 cut(s)	372, 828
EcoT14I	CCWWGG	2 cut(s)	516, 907
ErhI	CCWWGG	2 cut(s)	516, 907
FaeI	CATG	4 cut(s)	202, 454, 838, 911
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FaqI	GGGAC	1 cut(s)	889
FatI	CATG	4 cut(s)	198, 450, 834, 907
FauI	CCCGC	1 cut(s)	859
FbaI	TGATCA	2 cut(s)	591, 670
FblI	GTMKAC	1 cut(s)	945
Fnu4HI	GCNGC	7 cut(s)	262, 276, 555, 558, 561, 612, 918
FokI	GGATG	5 cut(s)	11, 335, 601, 718, 749
Fsp4HI	GCNGC	7 cut(s)	262, 276, 555, 558, 561, 612, 918
FspBI	CTAG	3 cut(s)	71, 483, 857
GlaI	GCGC	1 cut(s)	409
GluI	GCNGC	7 cut(s)	262, 276, 555, 558, 561, 612, 918
GsuI	CTGGAG	1 cut(s)	618
HaeII	RGCGCY	1 cut(s)	411
HgaI	GACGC	1 cut(s)	891
HhaI	GCGC	1 cut(s)	410
Hin1I	GRCGYC	1 cut(s)	902
Hin1II	CATG	4 cut(s)	202, 454, 838, 911
Hin6I	GCGC	1 cut(s)	408
HinP1I	GCGC	1 cut(s)	408
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	4 cut(s)	211, 368, 423, 467
HphI	GGTGA	5 cut(s)	150, 226, 725, 755, 817
Hpy166II	GTNNAC	3 cut(s)	296, 538, 946
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	6 cut(s)	89, 285, 674, 731, 877, 927
Hpy8I	GTNNAC	3 cut(s)	296, 538, 946
HpyAV	CCTTC	3 cut(s)	225, 696, 742
HpyCH4III	ACNGT	3 cut(s)	337, 721, 973
HpyCH4IV	ACGT	1 cut(s)	779
HpyCH4V	TGCA	6 cut(s)	251, 509, 563, 614, 776, 920
HpyF10VI	GCNNNNNNNGC	5 cut(s)	124, 133, 275, 551, 560
HpyF3I	CTNAG	4 cut(s)	48, 204, 265, 647
HpySE526I	ACGT	1 cut(s)	779
Hsp92I	GRCGYC	1 cut(s)	902
Hsp92II	CATG	4 cut(s)	202, 454, 838, 911
HspAI	GCGC	1 cut(s)	408
Ksp22I	TGATCA	2 cut(s)	591, 670
Kzo9I	GATC	4 cut(s)	175, 591, 670, 815
LmnI	GCTCC	2 cut(s)	41, 932
Lsp1109I	GCAGC	5 cut(s)	541, 544, 547, 598, 904
LweI	GCATC	1 cut(s)	572
MaeI	CTAG	3 cut(s)	71, 483, 857
MaeII	ACGT	1 cut(s)	779
MalI	GATC	4 cut(s)	177, 593, 672, 817
MbiI	CCGCTC	2 cut(s)	264, 854
MboI	GATC	4 cut(s)	175, 591, 670, 815
MhlI	GDGCHC	1 cut(s)	726
MluCI	AATT	7 cut(s)	15, 151, 530, 693, 896, 922, 954
MlyI	GAGTC	2 cut(s)	362, 417
MmeI	TCCRAC	1 cut(s)	679
MnlI	CCTC	7 cut(s)	59, 199, 313, 444, 727, 853, 923
MroXI	GAANNNNTTC	1 cut(s)	884
MseI	TTAA	2 cut(s)	386, 810
MslI	CAYNNNNRTG	3 cut(s)	29, 188, 449
MspA1I	CMGCKG	1 cut(s)	171
MspR9I	CCNGG	2 cut(s)	374, 830
MvaI	CCWGG	2 cut(s)	374, 830
MwoI	GCNNNNNNNGC	5 cut(s)	124, 133, 275, 551, 560
NcoI	CCATGG	1 cut(s)	907
NdeII	GATC	4 cut(s)	175, 591, 670, 815
NlaIII	CATG	4 cut(s)	202, 454, 838, 911
OliI	CACNNNNGTG	1 cut(s)	188
PdmI	GAANNNNTTC	1 cut(s)	884
PfeI	GAWTC	2 cut(s)	211, 467
PkrI	GCNGC	7 cut(s)	263, 277, 556, 559, 562, 613, 919
PleI	GAGTC	2 cut(s)	362, 417
PpsI	GAGTC	2 cut(s)	362, 417
PshAI	GACNNNNGTC	1 cut(s)	446
PsiI	TTATAA	1 cut(s)	122
Psp1406I	AACGTT	1 cut(s)	779
Psp6I	CCWGG	2 cut(s)	372, 828
PspGI	CCWGG	2 cut(s)	372, 828
PvuII	CAGCTG	1 cut(s)	171
RsaI	GTAC	3 cut(s)	145, 339, 400
RsaNI	GTAC	3 cut(s)	144, 338, 399
RseI	CAYNNNNRTG	3 cut(s)	29, 188, 449
SaqAI	TTAA	2 cut(s)	386, 810
SatI	GCNGC	7 cut(s)	262, 276, 555, 558, 561, 612, 918
Sau3AI	GATC	4 cut(s)	175, 591, 670, 815
SchI	GAGTC	2 cut(s)	362, 417
ScrFI	CCNGG	2 cut(s)	374, 830
SduI	GDGCHC	1 cut(s)	726
SfaNI	GCATC	1 cut(s)	572
SfcI	CTRYAG	2 cut(s)	100, 572
SmiMI	CAYNNNNRTG	3 cut(s)	29, 188, 449
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse9I	AATT	7 cut(s)	15, 151, 530, 693, 896, 922, 954
SsiI	CCGC	4 cut(s)	262, 275, 278, 852
SspMI	CTAG	3 cut(s)	71, 483, 857
StyD4I	CCNGG	2 cut(s)	372, 828
StyI	CCWWGG	2 cut(s)	516, 907
TaaI	ACNGT	3 cut(s)	337, 721, 973
TaiI	ACGT	1 cut(s)	782
TasI	AATT	7 cut(s)	15, 151, 530, 693, 896, 922, 954
TatI	WGTACW	1 cut(s)	143
TauI	GCSGC	2 cut(s)	264, 278
TfiI	GAWTC	2 cut(s)	211, 467
Tru1I	TTAA	2 cut(s)	386, 810
Tru9I	TTAA	2 cut(s)	386, 810
TscAI	CASTG	3 cut(s)	253, 276, 601
TseI	GCWGC	5 cut(s)	554, 557, 560, 611, 917
TspDTI	ATGAA	6 cut(s)	47, 144, 459, 751, 772, 877
TspRI	CASTG	3 cut(s)	253, 276, 601
XapI	RAATTY	3 cut(s)	151, 530, 922
XmiI	GTMKAC	1 cut(s)	945
XmnI	GAANNNNTTC	1 cut(s)	884
XspI	CTAG	3 cut(s)	71, 483, 857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.