Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0005537

Physical Location & Seq

Genomic Coordinates Reverse (-)

49260142 .. 49262227

Gene Structure 2086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G023630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCTGATGATCACAAAAAACAGTTGGATGGAGATTTAGCCACAGAGCCAGCAGAAACACCATCAGCAAATGCAGTAGAATTCAAAAACAACCAAGAAAATACTTCTGGCAATAAGAGCAAGGAGGAAGCAACCAATACAGTACCATTCTACAAGCTTTTCTCATTTGCTGATTCCATGGATTGCCTGTTAATGTCTGTTGGTATGATCGGCGCAATTGGAAATGGACTATGTCTGCCTCTAATGACCGTGATCATGGGAGAAGTGATTAACTCCTTTGGAGAAACTACGAATACCAAAAATGTGGTTGGTTTAGTTTCCCAGGTAGCACTAAAGTTTGTTTACTTGGCTGTAGGGGCTGCTGCTGCTGCATTTTCACAGATGTCTTGCTGGATGATCACCGGAGAGAGACAGGCTGCACGAATAAGATGTTTATACCTGAAAACAATACTGAGGCAAGATGTTGGTTTTTTTGATAAAGAGGCTAACACTGGGGAAATTGTTGGGAGAATGTCAGGTGATACTGTGCTCATTCAAGAGGCCATGGGGGAGAAAGTTGCGTCATTTACGAGGGAGAAGCAAGCTATAACTAAGTACAACAACTCCTTAGCTAAAGCTTACAAGTCTGGTGTGCAAGAGGGTTTAGCATCAGGAGTGGGTCTTGGTACGTTATGCATTGGCTATATGGTATGGCGGCAAAATGATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

236

Amino Acids

25.47

Weight (kDa)

5.34

Isoelectric Point (pI)

31.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	67 - 186	7.7e-21	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00610
malus_domestica	MD13G1139000.v1.1 MD17G1284600.v1.1
pyrus_communis	pycom16g11890
rosa_chinensis	RchiOBHm_Chr4g0427741
rosa_multiflora	Rmu_co8181678.1_g000001 Rmu_sc0000066.1_g000023 Rmu_sc0000066.1_g000038 Rmu_sc0003399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367600 Rroxscaffold_5G00369430 Rroxscaffold_5G00369490
rosa_samantha	Rh3AG272000 Rh3AG272500 Rh3DG007700 Rh3DG214800 Rh4AG272500 Rh4AG272600 Rh4AG276400 Rh4BG278200 Rh4BG278300 Rh4BG278400 Rh4BG282100 Rh4BG282300 Rh4BG282700 Rh4CG176800 Rh4CG297700 Rh4CG298200
rosa_wichuraiana	Rw4G023630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	694
AcsI	RAATTY	1 cut(s)	80
AfaI	GTAC	3 cut(s)	144, 596, 667
AgsI	TTSAA	2 cut(s)	85, 536
AjnI	CCWGG	1 cut(s)	321
AluBI	AGCT	4 cut(s)	157, 584, 611, 617
AluI	AGCT	4 cut(s)	157, 584, 611, 617
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	1 cut(s)	403
AoxI	GGCC	1 cut(s)	540
ApeKI	GCWGC	5 cut(s)	359, 362, 365, 368, 416
ApoI	RAATTY	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	215
AsuHPI	GGTGA	2 cut(s)	391, 530
Bbv12I	GWGCWC	1 cut(s)	531
BbvI	GCAGC	5 cut(s)	346, 349, 352, 355, 403
BccI	CCATC	2 cut(s)	23, 70
BciT130I	CCWGG	1 cut(s)	323
BclI	TGATCA	3 cut(s)	10, 252, 396
BcoDI	GTCTC	1 cut(s)	403
BfmI	CTRYAG	1 cut(s)	351
BisI	GCNGC	6 cut(s)	360, 363, 366, 369, 417, 695
BlsI	GCNGC	6 cut(s)	361, 364, 367, 370, 418, 696
Bme1390I	CCNGG	1 cut(s)	323
BmrFI	CCNGG	1 cut(s)	323
BmrI	ACTGGG	1 cut(s)	501
BmsI	GCATC	1 cut(s)	656
BmuI	ACTGGG	1 cut(s)	501
Bpu10I	CCTNAGC	1 cut(s)	607
BsaJI	CCNNGG	3 cut(s)	177, 321, 543
BsaWI	WCCGGW	1 cut(s)	401
BsaXI	ACNNNNNCTCC	2 cut(s)	587, 617
Bse1I	ACTGG	1 cut(s)	496
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	3 cut(s)	177, 321, 543
BseGI	GGATG	2 cut(s)	34, 399
BseMII	CTCAG	1 cut(s)	443
BseNI	ACTGG	1 cut(s)	496
BseXI	GCAGC	5 cut(s)	346, 349, 352, 355, 403
BsgI	GTGCAG	1 cut(s)	402
BshFI	GGCC	1 cut(s)	542
BsiHKAI	GWGCWC	1 cut(s)	531
BsiSI	CCGG	1 cut(s)	402
BsmAI	GTCTC	1 cut(s)	403
BsnI	GGCC	1 cut(s)	542
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp143I	GATC	4 cut(s)	10, 207, 252, 396
Bsp19I	CCATGG	2 cut(s)	177, 543
BspACI	CCGC	1 cut(s)	694
BspANI	GGCC	1 cut(s)	542
BspCNI	CTCAG	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	496
BssECI	CCNNGG	3 cut(s)	177, 321, 543
BssMI	GATC	4 cut(s)	10, 207, 252, 396
BssT1I	CCWWGG	2 cut(s)	177, 543
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	4 cut(s)	24, 142, 250, 526
BstC8I	GCNNGC	2 cut(s)	51, 582
BstDEI	CTNAG	3 cut(s)	452, 591, 607
BstDSI	CCRYGG	2 cut(s)	177, 543
BstF5I	GGATG	2 cut(s)	34, 399
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	4 cut(s)	13, 210, 255, 399
BstMAI	GTCTC	1 cut(s)	403
BstMBI	GATC	4 cut(s)	10, 207, 252, 396
BstMWI	GCNNNNNNNGC	4 cut(s)	117, 356, 365, 368
BstNI	CCWGG	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	321
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	5 cut(s)	346, 349, 352, 355, 403
BstXI	CCANNNNNNTGG	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	542
BtgI	CCRYGG	2 cut(s)	177, 543
BtsCI	GGATG	2 cut(s)	34, 399
BtsIMutI	CAGTG	1 cut(s)	489
Cac8I	GCNNGC	2 cut(s)	51, 582
CfoI	GCGC	1 cut(s)	215
CseI	GACGC	1 cut(s)	549
Csp6I	GTAC	3 cut(s)	143, 595, 666
CviAII	CATG	3 cut(s)	178, 256, 544
CviQI	GTAC	3 cut(s)	143, 595, 666
DdeI	CTNAG	3 cut(s)	452, 591, 607
DpnI	GATC	4 cut(s)	12, 209, 254, 398
DpnII	GATC	4 cut(s)	10, 207, 252, 396
Eco130I	CCWWGG	2 cut(s)	177, 543
EcoRI	GAATTC	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	321
EcoT14I	CCWWGG	2 cut(s)	177, 543
EcoT22I	ATGCAT	1 cut(s)	677
ErhI	CCWWGG	2 cut(s)	177, 543
FaeI	CATG	3 cut(s)	181, 259, 547
FatI	CATG	3 cut(s)	177, 255, 543
FbaI	TGATCA	3 cut(s)	10, 252, 396
Fnu4HI	GCNGC	6 cut(s)	360, 363, 366, 369, 417, 695
FokI	GGATG	2 cut(s)	41, 406
Fsp4HI	GCNGC	6 cut(s)	360, 363, 366, 369, 417, 695
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	6 cut(s)	360, 363, 366, 369, 417, 695
HaeIII	GGCC	1 cut(s)	542
HapII	CCGG	1 cut(s)	402
HgaI	GACGC	1 cut(s)	549
HhaI	GCGC	1 cut(s)	215
Hin1II	CATG	3 cut(s)	181, 259, 547
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HindIII	AAGCTT	2 cut(s)	155, 615
HinfI	GANTC	1 cut(s)	173
HpaII	CCGG	1 cut(s)	402
HphI	GGTGA	2 cut(s)	391, 530
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188III	TCNNGA	2 cut(s)	536, 651
Hpy8I	GTNNAC	1 cut(s)	343
HpyCH4III	ACNGT	4 cut(s)	24, 142, 250, 526
HpyCH4IV	ACGT	1 cut(s)	668
HpyCH4V	TGCA	5 cut(s)	74, 371, 419, 634, 675
HpyF10VI	GCNNNNNNNGC	4 cut(s)	117, 356, 365, 368
HpyF3I	CTNAG	3 cut(s)	452, 591, 607
HpySE526I	ACGT	1 cut(s)	668
Hsp92II	CATG	3 cut(s)	181, 259, 547
HspAI	GCGC	1 cut(s)	213
Ksp22I	TGATCA	3 cut(s)	10, 252, 396
Kzo9I	GATC	4 cut(s)	10, 207, 252, 396
Lsp1109I	GCAGC	5 cut(s)	346, 349, 352, 355, 403
LweI	GCATC	1 cut(s)	656
MaeII	ACGT	1 cut(s)	668
MalI	GATC	4 cut(s)	12, 209, 254, 398
MboI	GATC	4 cut(s)	10, 207, 252, 396
MfeI	CAATTG	1 cut(s)	216
MhlI	GDGCHC	1 cut(s)	531
MluCI	AATT	3 cut(s)	80, 216, 498
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	7 cut(s)	118, 249, 447, 475, 532, 564, 631
Mph1103I	ATGCAT	1 cut(s)	677
MseI	TTAA	2 cut(s)	191, 270
MspI	CCGG	1 cut(s)	402
MspR9I	CCNGG	1 cut(s)	323
MunI	CAATTG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	4 cut(s)	117, 356, 365, 368
NcoI	CCATGG	2 cut(s)	177, 543
NdeII	GATC	4 cut(s)	10, 207, 252, 396
NlaIII	CATG	3 cut(s)	181, 259, 547
NsiI	ATGCAT	1 cut(s)	677
PfeI	GAWTC	1 cut(s)	173
PflFI	GACNNNGTC	1 cut(s)	231
PkrI	GCNGC	6 cut(s)	361, 364, 367, 370, 418, 696
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PsyI	GACNNNGTC	1 cut(s)	231
RsaI	GTAC	3 cut(s)	144, 596, 667
RsaNI	GTAC	3 cut(s)	143, 595, 666
SaqAI	TTAA	2 cut(s)	191, 270
SatI	GCNGC	6 cut(s)	360, 363, 366, 369, 417, 695
Sau3AI	GATC	4 cut(s)	10, 207, 252, 396
ScrFI	CCNGG	1 cut(s)	323
SduI	GDGCHC	1 cut(s)	531
SetI	ASST	8 cut(s)	159, 327, 441, 520, 586, 613, 619, 671
SfaNI	GCATC	1 cut(s)	656
SfcI	CTRYAG	1 cut(s)	351
Sse9I	AATT	3 cut(s)	80, 216, 498
SsiI	CCGC	1 cut(s)	694
StyD4I	CCNGG	1 cut(s)	321
StyI	CCWWGG	2 cut(s)	177, 543
TaaI	ACNGT	4 cut(s)	24, 142, 250, 526
TaiI	ACGT	1 cut(s)	671
TasI	AATT	3 cut(s)	80, 216, 498
TatI	WGTACW	1 cut(s)	594
TauI	GCSGC	1 cut(s)	697
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	2 cut(s)	191, 270
Tru9I	TTAA	2 cut(s)	191, 270
TscAI	CASTG	1 cut(s)	496
TseI	GCWGC	5 cut(s)	359, 362, 365, 368, 416
TspRI	CASTG	1 cut(s)	496
Tth111I	GACNNNGTC	1 cut(s)	231
XapI	RAATTY	1 cut(s)	80
Zsp2I	ATGCAT	1 cut(s)	677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.