Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005537

Physical Location & Seq

Genomic Coordinates Forward (+)

55704775 .. 55711196

Gene Structure 6422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG297700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGCCGGAGGAAAATCCTTCGAATGGAGAGGTAAGCAAGCCCCGGCGAGTTTCAAAGACAACCAACAAGATACACACAGGAGCAAAGAATTACAAGCTTTCTCCTATGCTGATTCCATGCATGATCTCTGTTACCACAATCAGCGTTATTGGAAATGGACTCGGCTGTGATCTTATCACTCAAGTGGGAAGCATGGCTGAGGAGAATCCTTCAGTTGGAGATGTAATCACCAAGCAATATACTGCACCAAATAAGCGCTCAGCAGTGGCGGCGGTTTCCAAAGAATGTGAACAAAATATAAGCAAAAGCAAGGAGGATGGAACAAATACAGTACCATATAACAAGCTTTTCTCCTTTGCTGACTCCCTGGATTACCTGTTAATGTCTGTTGGTACAATCAGCGCCATTGGAAATGGAGTCTGCATGCCTCTAATGACCATTGTCATGGGAGATGTGATTGATTCATTTGGAGAAATTAGGAATATCAAGGAAGTGTCTAATGCAGTTTCCAAGGTAACTAAGTCTTCTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

177

Amino Acids

18.9

Weight (kDa)

6.59

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00610
malus_domestica	MD13G1139000.v1.1 MD17G1284600.v1.1
pyrus_communis	pycom16g11890
rosa_chinensis	RchiOBHm_Chr4g0427741
rosa_multiflora	Rmu_co8181678.1_g000001 Rmu_sc0000066.1_g000023 Rmu_sc0000066.1_g000038 Rmu_sc0003399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367600 Rroxscaffold_5G00369430 Rroxscaffold_5G00369490
rosa_samantha	Rh3AG272000 Rh3AG272500 Rh3DG007700 Rh3DG214800 Rh4AG272500 Rh4AG272600 Rh4AG276400 Rh4BG278200 Rh4BG278300 Rh4BG278400 Rh4BG282100 Rh4BG282300 Rh4BG282700 Rh4CG176800 Rh4CG297700 Rh4CG298200
rosa_wichuraiana	Rw4G023630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	269, 272
AcuI	CTGAAG	1 cut(s)	195
AfaI	GTAC	2 cut(s)	333, 394
AfeI	AGCGCT	1 cut(s)	257
AfiI	CCNNNNNNNGG	2 cut(s)	23, 215
AgsI	TTSAA	1 cut(s)	54
AjnI	CCWGG	1 cut(s)	366
AleI	CACNNNNGTG	1 cut(s)	182
AluBI	AGCT	2 cut(s)	97, 346
AluI	AGCT	2 cut(s)	97, 346
Aor51HI	AGCGCT	1 cut(s)	257
AspLEI	GCGC	2 cut(s)	258, 404
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	220
AsuII	TTCGAA	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	516
BbvCI	CCTCAGC	1 cut(s)	198
BccI	CCATC	1 cut(s)	311
BciT130I	CCWGG	1 cut(s)	368
BcnI	CCSGG	1 cut(s)	43
BfoI	RGCGCY	2 cut(s)	259, 405
BisI	GCNGC	1 cut(s)	270
BlpI	GCTNAGC	1 cut(s)	259
BlsI	GCNGC	1 cut(s)	271
Bme1390I	CCNGG	2 cut(s)	43, 368
BmrFI	CCNGG	2 cut(s)	43, 368
BoxI	GACNNNNGTC	1 cut(s)	440
BpiI	GAAGAC	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	198
Bpu1102I	GCTNAGC	1 cut(s)	259
Bpu14I	TTCGAA	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	165
BpuMI	CCSGG	1 cut(s)	43
BsaJI	CCNNGG	3 cut(s)	41, 366, 510
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 215
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	3 cut(s)	41, 366, 510
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	2 cut(s)	23, 215
BseMII	CTCAG	2 cut(s)	189, 273
BseRI	GAGGAG	1 cut(s)	215
BsgI	GTGCAG	1 cut(s)	228
BsiSI	CCGG	2 cut(s)	5, 43
BslI	CCNNNNNNNGG	2 cut(s)	23, 215
Bsp119I	TTCGAA	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	123, 169
Bsp1720I	GCTNAGC	1 cut(s)	259
BspACI	CCGC	2 cut(s)	269, 272
BspCNI	CTCAG	2 cut(s)	190, 272
BspT104I	TTCGAA	1 cut(s)	20
BssECI	CCNNGG	3 cut(s)	41, 366, 510
BssMI	GATC	2 cut(s)	123, 169
BssT1I	CCWWGG	1 cut(s)	510
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	1 cut(s)	331
BstBI	TTCGAA	1 cut(s)	20
BstC8I	GCNNGC	2 cut(s)	38, 425
BstDEI	CTNAG	3 cut(s)	198, 259, 519
BstF5I	GGATG	1 cut(s)	322
BstH2I	RGCGCY	2 cut(s)	259, 405
BstHHI	GCGC	2 cut(s)	258, 404
BstKTI	GATC	2 cut(s)	126, 172
BstMBI	GATC	2 cut(s)	123, 169
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	1 cut(s)	368
BstNSI	RCATGY	1 cut(s)	427
BstPAI	GACNNNNGTC	1 cut(s)	440
BstSCI	CCNGG	2 cut(s)	41, 366
BstV2I	GAAGAC	1 cut(s)	516
BstXI	CCANNNNNNTGG	1 cut(s)	445
BtsCI	GGATG	1 cut(s)	322
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	2 cut(s)	38, 425
CfoI	GCGC	2 cut(s)	258, 404
Csp6I	GTAC	2 cut(s)	332, 393
CviAII	CATG	5 cut(s)	117, 121, 193, 424, 445
CviJI	RGCY	5 cut(s)	40, 97, 165, 197, 346
CviKI_1	RGCY	5 cut(s)	40, 97, 165, 197, 346
CviQI	GTAC	2 cut(s)	332, 393
DdeI	CTNAG	3 cut(s)	198, 259, 519
DpnI	GATC	2 cut(s)	125, 171
DpnII	GATC	2 cut(s)	123, 169
Eco130I	CCWWGG	1 cut(s)	510
Eco47III	AGCGCT	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	195
EcoRII	CCWGG	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	510
EcoT22I	ATGCAT	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	510
FaeI	CATG	5 cut(s)	120, 124, 196, 427, 448
FatI	CATG	5 cut(s)	116, 120, 192, 423, 444
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	1 cut(s)	270
GlaI	GCGC	2 cut(s)	257, 403
GluI	GCNGC	1 cut(s)	270
HaeII	RGCGCY	2 cut(s)	259, 405
HapII	CCGG	2 cut(s)	5, 43
HhaI	GCGC	2 cut(s)	258, 404
Hin1II	CATG	5 cut(s)	120, 124, 196, 427, 448
Hin6I	GCGC	2 cut(s)	256, 402
HinP1I	GCGC	2 cut(s)	256, 402
HindIII	AAGCTT	2 cut(s)	95, 344
HinfI	GANTC	6 cut(s)	112, 159, 205, 362, 417, 461
HpaII	CCGG	2 cut(s)	5, 43
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	1 cut(s)	529
Hpy8I	GTNNAC	1 cut(s)	290
HpyAV	CCTTC	2 cut(s)	27, 219
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4V	TGCA	4 cut(s)	120, 245, 423, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	3 cut(s)	198, 259, 519
Hsp92II	CATG	5 cut(s)	120, 124, 196, 427, 448
HspAI	GCGC	2 cut(s)	256, 402
Kzo9I	GATC	2 cut(s)	123, 169
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	6 cut(s)	18, 56, 63, 353, 380, 389
MaeIII	GTNAC	2 cut(s)	130, 514
MalI	GATC	2 cut(s)	125, 171
MboI	GATC	2 cut(s)	123, 169
MboII	GAAGA	1 cut(s)	516
MluCI	AATT	2 cut(s)	88, 474
MlyI	GAGTC	3 cut(s)	153, 356, 426
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	4 cut(s)	22, 193, 307, 438
Mph1103I	ATGCAT	1 cut(s)	122
MseI	TTAA	1 cut(s)	380
MslI	CAYNNNNRTG	2 cut(s)	182, 443
MspI	CCGG	2 cut(s)	5, 43
MspR9I	CCNGG	2 cut(s)	43, 368
MvaI	CCWGG	1 cut(s)	368
MwoI	GCNNNNNNNGC	1 cut(s)	269
NciI	CCSGG	1 cut(s)	43
NdeII	GATC	2 cut(s)	123, 169
NlaIII	CATG	5 cut(s)	120, 124, 196, 427, 448
NmeAIII	GCCGAG	1 cut(s)	141
NsiI	ATGCAT	1 cut(s)	122
NspI	RCATGY	1 cut(s)	427
NspV	TTCGAA	1 cut(s)	20
OliI	CACNNNNGTG	1 cut(s)	182
PaeI	GCATGC	1 cut(s)	427
PfeI	GAWTC	3 cut(s)	112, 205, 461
PkrI	GCNGC	1 cut(s)	271
PleI	GAGTC	3 cut(s)	153, 356, 425
PpsI	GAGTC	3 cut(s)	153, 356, 425
PshAI	GACNNNNGTC	1 cut(s)	440
Psp6I	CCWGG	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	366
RsaI	GTAC	2 cut(s)	333, 394
RsaNI	GTAC	2 cut(s)	332, 393
RseI	CAYNNNNRTG	2 cut(s)	182, 443
SaqAI	TTAA	1 cut(s)	380
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	2 cut(s)	123, 169
SchI	GAGTC	3 cut(s)	153, 356, 426
ScrFI	CCNGG	2 cut(s)	43, 368
SetI	ASST	5 cut(s)	33, 99, 348, 378, 516
SfuI	TTCGAA	1 cut(s)	20
SmiMI	CAYNNNNRTG	2 cut(s)	182, 443
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
SphI	GCATGC	1 cut(s)	427
Sse9I	AATT	2 cut(s)	88, 474
SsiI	CCGC	2 cut(s)	269, 272
StyD4I	CCNGG	2 cut(s)	41, 366
StyI	CCWWGG	1 cut(s)	510
TaaI	ACNGT	1 cut(s)	331
TaqI	TCGA	1 cut(s)	20
TasI	AATT	2 cut(s)	88, 474
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	3 cut(s)	112, 205, 461
Tru1I	TTAA	1 cut(s)	380
Tru9I	TTAA	1 cut(s)	380
TscAI	CASTG	1 cut(s)	270
TspDTI	ATGAA	1 cut(s)	453
TspRI	CASTG	1 cut(s)	270
XceI	RCATGY	1 cut(s)	427
Zsp2I	ATGCAT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.