Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003399.1

Orthogroup ID

OG0005537

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1153

Gene Structure 1153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003399.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atgggtgatcaggagaatcctttggatggagatcatgtgatcagagaggaagctgccgcgtcgaaaagtcaatcagcagtgccggaatcccagaacggaccggaaaatactagtaacaaggaagatgcaagcaagagcaaggagggtggcaccaaggcagtaccctttttcaagctcttctcatttgctgattccatggattacttgttaatgttggttggtacgattagcgcaattggaaatggaatgtgtttgcctctaatgaccgtaatcatgggagatgtgattaattcttttggagaatctgggaattccaataaagtggttgatacagtgtctaaggtggctttaaagttcgtctacttggctttgggagctgcagctgcttcatttctacagatgtcttgttggatgatcaccggagagagacaggctgcgagaataagatttttatacttgaaaacaatattgaggcaagacgtaggcttttttgataaagaaactagcactggagaagttattgggaggatgtcaggtgatactgtgctcattcaggaggccatgggagagaaggtaggaacttgtatccagttatttgcaacattctttggaggctttatcatagcctttgttaagggatggcttcttaccctggtcatgctttcttctatccccgctcttgtcatctctggtgctgtcatgagcatcatcgtatcaaagttggcatctcgaggacaagctgcttattcagcagcagcatctgtggttgagcagacaattggttcaataagaact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

265

Amino Acids

28.2

Weight (kDa)

5.33

Isoelectric Point (pI)

30.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00610
malus_domestica	MD13G1139000.v1.1 MD17G1284600.v1.1
pyrus_communis	pycom16g11890
rosa_chinensis	RchiOBHm_Chr4g0427741
rosa_multiflora	Rmu_co8181678.1_g000001 Rmu_sc0000066.1_g000023 Rmu_sc0000066.1_g000038 Rmu_sc0003399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367600 Rroxscaffold_5G00369430 Rroxscaffold_5G00369490
rosa_samantha	Rh3AG272000 Rh3AG272500 Rh3DG007700 Rh3DG214800 Rh4AG272500 Rh4AG272600 Rh4AG276400 Rh4BG278200 Rh4BG278300 Rh4BG278400 Rh4BG282100 Rh4BG282300 Rh4BG282700 Rh4CG176800 Rh4CG297700 Rh4CG298200
rosa_wichuraiana	Rw4G023630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AccBSI	CCGCTC	1 cut(s)	677
AccI	GTMKAC	1 cut(s)	360
AccII	CGCG	1 cut(s)	59
AciI	CCGC	2 cut(s)	57, 675
AcsI	RAATTY	1 cut(s)	310
AfaI	GTAC	2 cut(s)	162, 223
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	3 cut(s)	172, 460, 786
AhlI	ACTAGT	1 cut(s)	110
AjnI	CCWGG	1 cut(s)	651
AluBI	AGCT	5 cut(s)	53, 175, 377, 383, 740
AluI	AGCT	5 cut(s)	53, 175, 377, 383, 740
Alw21I	GWGCWC	1 cut(s)	549
Alw26I	GTCTC	1 cut(s)	421
AlwNI	CAGNNNCTG	1 cut(s)	761
Ama87I	CYCGRG	1 cut(s)	729
AoxI	GGCC	1 cut(s)	558
ApeKI	GCWGC	8 cut(s)	53, 377, 380, 383, 434, 740, 752, 755
ApoI	RAATTY	1 cut(s)	310
AseI	ATTAAT	1 cut(s)	288
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	98
AsuHPI	GGTGA	3 cut(s)	17, 409, 548
AvaI	CYCGRG	1 cut(s)	729
AvaII	GGWCC	1 cut(s)	98
BanI	GGYRCC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	549
BbvI	GCAGC	8 cut(s)	40, 364, 370, 392, 421, 727, 764, 767
BccI	CCATC	2 cut(s)	20, 633
BciT130I	CCWGG	1 cut(s)	653
BciVI	GTATCC	1 cut(s)	596
BclI	TGATCA	3 cut(s)	7, 39, 414
BcoDI	GTCTC	1 cut(s)	421
BcuI	ACTAGT	1 cut(s)	110
BfaI	CTAG	2 cut(s)	111, 504
BfmI	CTRYAG	2 cut(s)	378, 395
BfuI	GTATCC	1 cut(s)	596
BisI	GCNGC	9 cut(s)	54, 57, 378, 381, 384, 435, 741, 753, 756
BlsI	GCNGC	9 cut(s)	55, 58, 379, 382, 385, 436, 742, 754, 757
Bme1390I	CCNGG	1 cut(s)	653
Bme18I	GGWCC	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	729
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	151
BmrFI	CCNGG	1 cut(s)	653
BmsI	GCATC	4 cut(s)	115, 714, 734, 767
BpmI	CTGGAG	1 cut(s)	531
BsaBI	GATNNNNATC	1 cut(s)	30
BsaJI	CCNNGG	4 cut(s)	153, 195, 561, 651
BsaWI	WCCGGW	2 cut(s)	100, 419
BsaXI	ACNNNNNCTCC	4 cut(s)	21, 51, 558, 588
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	2 cut(s)	514, 589
Bse8I	GATNNNNATC	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	653
BseDI	CCNNGG	4 cut(s)	153, 195, 561, 651
BseGI	GGATG	4 cut(s)	31, 417, 534, 644
BseJI	GATNNNNATC	1 cut(s)	30
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseNI	ACTGG	2 cut(s)	514, 589
BseXI	GCAGC	8 cut(s)	40, 364, 370, 392, 421, 727, 764, 767
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	1 cut(s)	560
BshNI	GGYRCC	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	549
BsiHKCI	CYCGRG	1 cut(s)	729
BsiSI	CCGG	3 cut(s)	83, 101, 420
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	421
BsnI	GGCC	1 cut(s)	560
BsoBI	CYCGRG	1 cut(s)	729
Bsp1286I	GDGCHC	1 cut(s)	549
Bsp143I	GATC	4 cut(s)	7, 31, 39, 414
Bsp19I	CCATGG	2 cut(s)	195, 561
BspACI	CCGC	2 cut(s)	57, 675
BspANI	GGCC	1 cut(s)	560
BspFNI	CGCG	1 cut(s)	59
BspHI	TCATGA	1 cut(s)	699
BspLI	GGNNCC	1 cut(s)	151
BspMAI	CTGCAG	1 cut(s)	382
BspQI	GCTCTTC	1 cut(s)	182
BspT107I	GGYRCC	1 cut(s)	149
BsrBI	CCGCTC	1 cut(s)	677
BsrI	ACTGG	2 cut(s)	514, 589
BssECI	CCNNGG	4 cut(s)	153, 195, 561, 651
BssMI	GATC	4 cut(s)	7, 31, 39, 414
BssT1I	CCWWGG	3 cut(s)	153, 195, 561
Bst2UI	CCWGG	1 cut(s)	653
Bst4CI	ACNGT	3 cut(s)	268, 334, 544
Bst6I	CTCTTC	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	339
BstDSI	CCRYGG	2 cut(s)	195, 561
BstF5I	GGATG	4 cut(s)	31, 417, 534, 644
BstFNI	CGCG	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	4 cut(s)	10, 34, 42, 417
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	4 cut(s)	7, 31, 39, 414
BstMWI	GCNNNNNNNGC	3 cut(s)	374, 383, 749
BstNI	CCWGG	1 cut(s)	653
BstSCI	CCNGG	1 cut(s)	651
BstSFI	CTRYAG	2 cut(s)	378, 395
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	8 cut(s)	40, 364, 370, 392, 421, 727, 764, 767
BstXI	CCANNNNNNTGG	1 cut(s)	322
BsuI	GTATCC	1 cut(s)	596
BsuRI	GGCC	1 cut(s)	560
BtgI	CCRYGG	2 cut(s)	195, 561
BtsCI	GGATG	4 cut(s)	31, 417, 534, 644
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	3 cut(s)	84, 339, 507
Cac8I	GCNNGC	1 cut(s)	130
CaiI	CAGNNNCTG	1 cut(s)	761
CciI	TCATGA	1 cut(s)	699
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	1 cut(s)	98
CpoI	CGGWCCG	1 cut(s)	98
CseI	GACGC	1 cut(s)	48
Csp6I	GTAC	2 cut(s)	161, 222
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CspI	CGGWCCG	1 cut(s)	98
CviAII	CATG	6 cut(s)	35, 196, 274, 562, 658, 700
CviQI	GTAC	2 cut(s)	161, 222
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	4 cut(s)	9, 33, 41, 416
DpnII	GATC	4 cut(s)	7, 31, 39, 414
DraI	TTTAAA	1 cut(s)	351
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Eco130I	CCWWGG	3 cut(s)	153, 195, 561
Eco47I	GGWCC	1 cut(s)	98
Eco88I	CYCGRG	1 cut(s)	729
EcoRI	GAATTC	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	651
EcoT14I	CCWWGG	3 cut(s)	153, 195, 561
ErhI	CCWWGG	3 cut(s)	153, 195, 561
FaeI	CATG	6 cut(s)	38, 199, 277, 565, 661, 703
FaiI	YATR	8 cut(s)	36, 197, 275, 454, 563, 623, 659, 701
FatI	CATG	6 cut(s)	34, 195, 273, 561, 657, 699
FauI	CCCGC	1 cut(s)	682
FbaI	TGATCA	3 cut(s)	7, 39, 414
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	9 cut(s)	54, 57, 378, 381, 384, 435, 741, 753, 756
FokI	GGATG	4 cut(s)	38, 424, 541, 651
Fsp4HI	GCNGC	9 cut(s)	54, 57, 378, 381, 384, 435, 741, 753, 756
FspBI	CTAG	2 cut(s)	111, 504
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	9 cut(s)	54, 57, 378, 381, 384, 435, 741, 753, 756
GsuI	CTGGAG	1 cut(s)	531
HaeIII	GGCC	1 cut(s)	560
HapII	CCGG	3 cut(s)	83, 101, 420
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	6 cut(s)	38, 199, 277, 565, 661, 703
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	4 cut(s)	16, 86, 191, 302
HpaII	CCGG	3 cut(s)	83, 101, 420
HphI	GGTGA	3 cut(s)	17, 409, 548
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	1 cut(s)	44
Hpy188III	TCNNGA	4 cut(s)	11, 554, 700, 729
Hpy8I	GTNNAC	1 cut(s)	361
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	565
HpyCH4III	ACNGT	3 cut(s)	268, 334, 544
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	3 cut(s)	128, 380, 599
HpyF10VI	GCNNNNNNNGC	3 cut(s)	374, 383, 749
HpyF3I	CTNAG	1 cut(s)	339
HpySE526I	ACGT	1 cut(s)	480
Hsp92II	CATG	6 cut(s)	38, 199, 277, 565, 661, 703
HspAI	GCGC	1 cut(s)	231
Ksp22I	TGATCA	3 cut(s)	7, 39, 414
Kzo9I	GATC	4 cut(s)	7, 31, 39, 414
LguI	GCTCTTC	1 cut(s)	182
LmnI	GCTCC	1 cut(s)	374
Lsp1109I	GCAGC	8 cut(s)	40, 364, 370, 392, 421, 727, 764, 767
LweI	GCATC	4 cut(s)	115, 714, 734, 767
MaeI	CTAG	2 cut(s)	111, 504
MaeII	ACGT	1 cut(s)	480
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	4 cut(s)	9, 33, 41, 416
MbiI	CCGCTC	1 cut(s)	677
MboI	GATC	4 cut(s)	7, 31, 39, 414
MboII	GAAGA	3 cut(s)	134, 169, 657
MfeI	CAATTG	2 cut(s)	234, 777
MhlI	GDGCHC	1 cut(s)	549
MluCI	AATT	4 cut(s)	234, 289, 310, 777
MmeI	TCCRAC	1 cut(s)	389
MnlI	CCTC	8 cut(s)	40, 136, 267, 465, 519, 550, 605, 725
MseI	TTAA	4 cut(s)	209, 288, 350, 633
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	3 cut(s)	83, 101, 420
MspR9I	CCNGG	1 cut(s)	653
MunI	CAATTG	2 cut(s)	234, 777
MvaI	CCWGG	1 cut(s)	653
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	3 cut(s)	374, 383, 749
NcoI	CCATGG	2 cut(s)	195, 561
NdeII	GATC	4 cut(s)	7, 31, 39, 414
NlaIII	CATG	6 cut(s)	38, 199, 277, 565, 661, 703
NlaIV	GGNNCC	1 cut(s)	151
PaeR7I	CTCGAG	1 cut(s)	729
PagI	TCATGA	1 cut(s)	699
PciSI	GCTCTTC	1 cut(s)	182
PfeI	GAWTC	4 cut(s)	16, 86, 191, 302
PkrI	GCNGC	9 cut(s)	55, 58, 379, 382, 385, 436, 742, 754, 757
PshBI	ATTAAT	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	651
PspGI	CCWGG	1 cut(s)	651
PspN4I	GGNNCC	1 cut(s)	151
PspPI	GGNCC	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	382
PstNI	CAGNNNCTG	1 cut(s)	761
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	2 cut(s)	162, 223
RsaNI	GTAC	2 cut(s)	161, 222
Rsr2I	CGGWCCG	1 cut(s)	98
RsrII	CGGWCCG	1 cut(s)	98
SapI	GCTCTTC	1 cut(s)	182
SaqAI	TTAA	4 cut(s)	209, 288, 350, 633
SatI	GCNGC	9 cut(s)	54, 57, 378, 381, 384, 435, 741, 753, 756
Sau3AI	GATC	4 cut(s)	7, 31, 39, 414
Sau96I	GGNCC	1 cut(s)	98
ScrFI	CCNGG	1 cut(s)	653
SduI	GDGCHC	1 cut(s)	549
SetI	ASST	9 cut(s)	55, 177, 345, 379, 385, 483, 538, 576, 742
SfaNI	GCATC	4 cut(s)	115, 714, 734, 767
SfcI	CTRYAG	2 cut(s)	378, 395
Sfr274I	CTCGAG	1 cut(s)	729
SinI	GGWCC	1 cut(s)	98
SlaI	CTCGAG	1 cut(s)	729
SmlI	CTYRAG	1 cut(s)	729
SmoI	CTYRAG	1 cut(s)	729
SpeI	ACTAGT	1 cut(s)	110
Sse9I	AATT	4 cut(s)	234, 289, 310, 777
SsiI	CCGC	2 cut(s)	57, 675
SspI	AATATT	1 cut(s)	468
SspMI	CTAG	2 cut(s)	111, 504
StyD4I	CCNGG	1 cut(s)	651
StyI	CCWWGG	3 cut(s)	153, 195, 561
TaaI	ACNGT	3 cut(s)	268, 334, 544
TaiI	ACGT	1 cut(s)	483
TaqI	TCGA	2 cut(s)	62, 730
TasI	AATT	4 cut(s)	234, 289, 310, 777
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	4 cut(s)	16, 86, 191, 302
Tru1I	TTAA	4 cut(s)	209, 288, 350, 633
Tru9I	TTAA	4 cut(s)	209, 288, 350, 633
TscAI	CASTG	3 cut(s)	84, 339, 514
TseI	GCWGC	8 cut(s)	53, 377, 380, 383, 434, 740, 752, 755
TspDTI	ATGAA	1 cut(s)	378
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	3 cut(s)	84, 339, 514
VpaK11BI	GGWCC	1 cut(s)	98
VspI	ATTAAT	1 cut(s)	288
XapI	RAATTY	1 cut(s)	310
XhoI	CTCGAG	1 cut(s)	729
XmiI	GTMKAC	1 cut(s)	360
XspI	CTAG	2 cut(s)	111, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.