Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005537

Physical Location & Seq

Genomic Coordinates Forward (+)

45639431 .. 45648061

Gene Structure 8631 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG282100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGGTGATCAGGAGAATCCTTTGGATGGAGATCATGTGATCAGAGAGGAAGCTGCCGCGTCGAAAAGTCAACCAGCAGTGCCGGAATCCCAGAAAGGACCGGAAAATAGTAGTAACAAGGAAGATGCAAGCAAGAGCAAGGAGGGTGGCACCAAGACAGTACCATTTTTCAAGCTCTTCTCATTTGCTGATTCCATGGATTACTTGTTAATGTCGGTTGGTACGATTAGCGCGATTGGAAATGGAATGGGTATGCCTCTAATGACCGTAATCATGGGAGATGTGGTTAATTCTTTTGGAGAATCTGGGAATTCCAATAAAGTGGTTGATACAGTGTCTAAGGACCAAGAAGATGCAAATGAGAAGGCCATTGACCTTCGAGAAGGAGACCCATCTAGATTGATGGGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

137

Amino Acids

14.61

Weight (kDa)

4.45

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00610
malus_domestica	MD13G1139000.v1.1 MD17G1284600.v1.1
pyrus_communis	pycom16g11890
rosa_chinensis	RchiOBHm_Chr4g0427741
rosa_multiflora	Rmu_co8181678.1_g000001 Rmu_sc0000066.1_g000023 Rmu_sc0000066.1_g000038 Rmu_sc0003399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367600 Rroxscaffold_5G00369430 Rroxscaffold_5G00369490
rosa_samantha	Rh3AG272000 Rh3AG272500 Rh3DG007700 Rh3DG214800 Rh4AG272500 Rh4AG272600 Rh4AG276400 Rh4BG278200 Rh4BG278300 Rh4BG278400 Rh4BG282100 Rh4BG282300 Rh4BG282700 Rh4CG176800 Rh4CG297700 Rh4CG298200
rosa_wichuraiana	Rw4G023630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AccII	CGCG	2 cut(s)	59, 233
AciI	CCGC	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	310
AfaI	GTAC	2 cut(s)	162, 223
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	172
AluBI	AGCT	2 cut(s)	53, 175
AluI	AGCT	2 cut(s)	53, 175
Alw26I	GTCTC	1 cut(s)	381
AoxI	GGCC	1 cut(s)	366
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	310
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	2 cut(s)	98, 343
AsuHPI	GGTGA	1 cut(s)	17
AvaII	GGWCC	2 cut(s)	98, 343
BanI	GGYRCC	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	3 cut(s)	20, 397, 400
BclI	TGATCA	2 cut(s)	7, 39
BcoDI	GTCTC	1 cut(s)	381
BfaI	CTAG	1 cut(s)	396
BisI	GCNGC	2 cut(s)	54, 57
BlsI	GCNGC	2 cut(s)	55, 58
Bme18I	GGWCC	2 cut(s)	98, 343
BmgT120I	GGNCC	2 cut(s)	98, 343
BmiI	GGNNCC	1 cut(s)	151
BmsI	GCATC	2 cut(s)	115, 343
BsaBI	GATNNNNATC	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	195
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	4 cut(s)	21, 51, 270, 300
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse8I	GATNNNNATC	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	1 cut(s)	31
BseJI	GATNNNNATC	1 cut(s)	30
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	40
Bsh1236I	CGCG	2 cut(s)	59, 233
BshFI	GGCC	1 cut(s)	368
BshNI	GGYRCC	1 cut(s)	149
BsiSI	CCGG	2 cut(s)	83, 101
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	381
BsnI	GGCC	1 cut(s)	368
Bso31I	GGTCTC	1 cut(s)	381
Bsp143I	GATC	3 cut(s)	7, 31, 39
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	1 cut(s)	368
BspFNI	CGCG	2 cut(s)	59, 233
BspLI	GGNNCC	1 cut(s)	151
BspQI	GCTCTTC	1 cut(s)	182
BspT107I	GGYRCC	1 cut(s)	149
BspTNI	GGTCTC	1 cut(s)	381
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	3 cut(s)	7, 31, 39
BssT1I	CCWWGG	1 cut(s)	195
Bst4CI	ACNGT	3 cut(s)	160, 268, 334
Bst6I	CTCTTC	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	339
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	31
BstFNI	CGCG	2 cut(s)	59, 233
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	3 cut(s)	10, 34, 42
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	3 cut(s)	7, 31, 39
BstUI	CGCG	2 cut(s)	59, 233
BstV1I	GCAGC	1 cut(s)	40
BstXI	CCANNNNNNTGG	1 cut(s)	322
BsuRI	GGCC	1 cut(s)	368
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	31
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	2 cut(s)	84, 339
Cac8I	GCNNGC	1 cut(s)	130
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	2 cut(s)	98, 343
CseI	GACGC	1 cut(s)	48
Csp6I	GTAC	2 cut(s)	161, 222
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	3 cut(s)	35, 196, 274
CviJI	RGCY	3 cut(s)	53, 175, 368
CviKI_1	RGCY	3 cut(s)	53, 175, 368
CviQI	GTAC	2 cut(s)	161, 222
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	3 cut(s)	9, 33, 41
DpnII	GATC	3 cut(s)	7, 31, 39
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	381
Eco47I	GGWCC	2 cut(s)	98, 343
EcoRI	GAATTC	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	3 cut(s)	38, 199, 277
FaiI	YATR	4 cut(s)	36, 197, 254, 275
FatI	CATG	3 cut(s)	34, 195, 273
FbaI	TGATCA	2 cut(s)	7, 39
Fnu4HI	GCNGC	2 cut(s)	54, 57
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	2 cut(s)	54, 57
FspBI	CTAG	1 cut(s)	396
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	2 cut(s)	54, 57
HaeIII	GGCC	1 cut(s)	368
HapII	CCGG	2 cut(s)	83, 101
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	3 cut(s)	38, 199, 277
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HincII	GTYRAC	1 cut(s)	71
HindII	GTYRAC	1 cut(s)	71
HinfI	GANTC	4 cut(s)	16, 86, 191, 302
HpaII	CCGG	2 cut(s)	83, 101
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	71
Hpy188I	TCNGA	1 cut(s)	44
Hpy188III	TCNNGA	3 cut(s)	11, 380, 396
Hpy8I	GTNNAC	1 cut(s)	71
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	3 cut(s)	358, 377, 386
HpyCH4III	ACNGT	3 cut(s)	160, 268, 334
HpyCH4V	TGCA	2 cut(s)	128, 356
HpyF3I	CTNAG	1 cut(s)	339
Hsp92II	CATG	3 cut(s)	38, 199, 277
HspAI	GCGC	1 cut(s)	231
Ksp22I	TGATCA	2 cut(s)	7, 39
Kzo9I	GATC	3 cut(s)	7, 31, 39
LguI	GCTCTTC	1 cut(s)	182
LpnPI	CCDG	5 cut(s)	87, 96, 104, 114, 291
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	2 cut(s)	115, 343
MaeI	CTAG	1 cut(s)	396
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	3 cut(s)	9, 33, 41
MboI	GATC	3 cut(s)	7, 31, 39
MboII	GAAGA	3 cut(s)	134, 169, 362
MluCI	AATT	2 cut(s)	289, 310
MnlI	CCTC	3 cut(s)	40, 136, 267
MseI	TTAA	2 cut(s)	209, 288
MspI	CCGG	2 cut(s)	83, 101
MvnI	CGCG	2 cut(s)	59, 233
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	3 cut(s)	7, 31, 39
NlaIII	CATG	3 cut(s)	38, 199, 277
NlaIV	GGNNCC	1 cut(s)	151
PciSI	GCTCTTC	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	2 cut(s)	221, 230
PfeI	GAWTC	4 cut(s)	16, 86, 191, 302
PkrI	GCNGC	2 cut(s)	55, 58
PspN4I	GGNNCC	1 cut(s)	151
PspPI	GGNCC	2 cut(s)	98, 343
RsaI	GTAC	2 cut(s)	162, 223
RsaNI	GTAC	2 cut(s)	161, 222
SapI	GCTCTTC	1 cut(s)	182
SaqAI	TTAA	2 cut(s)	209, 288
SatI	GCNGC	2 cut(s)	54, 57
Sau3AI	GATC	3 cut(s)	7, 31, 39
Sau96I	GGNCC	2 cut(s)	98, 343
SetI	ASST	3 cut(s)	55, 177, 378
SfaNI	GCATC	2 cut(s)	115, 343
SinI	GGWCC	2 cut(s)	98, 343
Sse9I	AATT	2 cut(s)	289, 310
SsiI	CCGC	1 cut(s)	57
SspMI	CTAG	1 cut(s)	396
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	3 cut(s)	160, 268, 334
TaqI	TCGA	2 cut(s)	62, 379
TasI	AATT	2 cut(s)	289, 310
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	4 cut(s)	16, 86, 191, 302
Tru1I	TTAA	2 cut(s)	209, 288
Tru9I	TTAA	2 cut(s)	209, 288
TscAI	CASTG	2 cut(s)	84, 339
TseI	GCWGC	1 cut(s)	53
TspRI	CASTG	2 cut(s)	84, 339
VpaK11BI	GGWCC	2 cut(s)	98, 343
XapI	RAATTY	1 cut(s)	310
XbaI	TCTAGA	1 cut(s)	395
XspI	CTAG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.