pycom16g11890

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
8274755 .. 8275372
618 bp
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UTR
Exon/CDS
Intron
pycom16g11890.2

Sequence Viewer

Length: 324 bp
ATGGCGGAGGATGAAGATGTAATCAAGAAGCAGGTCACGGCAACATCCAAGGGCCACTCAGCGGTGGAGGATTCCCAAAACAGCAAGAAAGATACAAGCAAGAACAAGGAGGATGGCACCAAAACAGTACCATTTCACAAGCTTTTCTCCTTTGCAGATACCTTGGATTACATGTTAATGTCTGTTGGTACAATCAGTGCCATTGGAAATGGGCTCTGTACGCCTCTAATGACCATAATCTTGGGAGAGGTGATAAATTCTTTTGGAGGAACTGGGAATACCAAAGAAGTGGTGGATGCAGTCTCCAAGCGTAAGTTTTACTGA

Protein Analysis

108

Amino Acids

11.57

Weight (kDa)

6.07

Isoelectric Point (pI)

34.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 22
AccB1I GGYRCC 1 cut(s) 116
AciI CCGC 2 cut(s) 5, 62
AcsI RAATTY 1 cut(s) 256
AfaI GTAC 3 cut(s) 129, 190, 220
AfiI CCNNNNNNNGG 1 cut(s) 61
AflIII ACRYGT 1 cut(s) 171
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
Alw26I GTCTC 1 cut(s) 307
AoxI GGCC 1 cut(s) 52
ApoI RAATTY 1 cut(s) 256
AspS9I GGNCC 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 262
BanI GGYRCC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 216
BccI CCATC 1 cut(s) 107
BceAI ACGGC 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 307
BfuAI ACCTGC 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 118
BmrI ACTGGG 1 cut(s) 282
BmsI GCATC 1 cut(s) 286
BmuI ACTGGG 1 cut(s) 282
BsaJI CCNNGG 2 cut(s) 48, 162
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse1I ACTGG 1 cut(s) 277
BseDI CCNNGG 2 cut(s) 48, 162
BseGI GGATG 4 cut(s) 16, 44, 118, 301
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 277
BshFI GGCC 1 cut(s) 54
BshNI GGYRCC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 307
BsnI GGCC 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 216
BspACI CCGC 2 cut(s) 5, 62
BspANI GGCC 1 cut(s) 54
BspCNI CTCAG 1 cut(s) 71
BspLI GGNNCC 1 cut(s) 118
BspMI ACCTGC 1 cut(s) 22
BspT107I GGYRCC 1 cut(s) 116
BsrI ACTGG 1 cut(s) 277
BssECI CCNNGG 2 cut(s) 48, 162
BssT1I CCWWGG 2 cut(s) 48, 162
Bst4CI ACNGT 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 58
BstF5I GGATG 4 cut(s) 16, 44, 118, 301
BstMAI GTCTC 1 cut(s) 307
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstNSI RCATGY 1 cut(s) 175
BstXI CCANNNNNNTGG 2 cut(s) 241, 289
BsuRI GGCC 1 cut(s) 54
BtsCI GGATG 4 cut(s) 16, 44, 118, 301
BtsIMutI CAGTG 1 cut(s) 202
BveI ACCTGC 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 52
Csp6I GTAC 3 cut(s) 128, 189, 219
CviAII CATG 1 cut(s) 172
CviJI RGCY 3 cut(s) 54, 142, 214
CviKI_1 RGCY 3 cut(s) 54, 142, 214
CviQI GTAC 3 cut(s) 128, 189, 219
DdeI CTNAG 1 cut(s) 58
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 48, 162
Eco24I GRGCYC 1 cut(s) 216
EcoT14I CCWWGG 2 cut(s) 48, 162
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 2 cut(s) 48, 162
FaeI CATG 1 cut(s) 175
FaiI YATR 2 cut(s) 173, 236
FatI CATG 1 cut(s) 171
FokI GGATG 4 cut(s) 23, 31, 125, 308
FriOI GRGCYC 1 cut(s) 216
HaeIII GGCC 1 cut(s) 54
Hin1II CATG 1 cut(s) 175
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 1 cut(s) 71
HphI GGTGA 1 cut(s) 262
Hpy188III TCNNGA 1 cut(s) 25
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 2 cut(s) 155, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
HpyF3I CTNAG 1 cut(s) 58
Hsp92II CATG 1 cut(s) 175
LpnPI CCDG 2 cut(s) 17, 258
LweI GCATC 1 cut(s) 286
MaeIII GTNAC 1 cut(s) 34
MboII GAAGA 1 cut(s) 26
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 1 cut(s) 256
MnlI CCTC 5 cut(s) 61, 103, 234, 241, 260
MseI TTAA 1 cut(s) 176
MslI CAYNNNNRTG 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 220
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 1 cut(s) 175
PciI ACATGT 1 cut(s) 171
PfeI GAWTC 1 cut(s) 71
PscI ACATGT 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 1 cut(s) 52
PsrI GAACNNNNNNTAC 2 cut(s) 262, 294
RsaI GTAC 3 cut(s) 129, 190, 220
RsaNI GTAC 3 cut(s) 128, 189, 219
RseI CAYNNNNRTG 1 cut(s) 176
SaqAI TTAA 1 cut(s) 176
Sau96I GGNCC 1 cut(s) 52
SduI GDGCHC 1 cut(s) 216
SetI ASST 4 cut(s) 36, 144, 164, 252
SfaNI GCATC 1 cut(s) 286
SmiMI CAYNNNNRTG 1 cut(s) 176
Sse9I AATT 1 cut(s) 256
SsiI CCGC 2 cut(s) 5, 62
StyI CCWWGG 2 cut(s) 48, 162
TaaI ACNGT 1 cut(s) 127
TasI AATT 1 cut(s) 256
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 27
TspRI CASTG 1 cut(s) 202
XapI RAATTY 1 cut(s) 256
XceI RCATGY 1 cut(s) 175
XcmI CCANNNNNNNNNTGG 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.